View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_2 (Length: 561)
Name: NF10039_low_2
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 548
Target Start/End: Original strand, 26595286 - 26595818
Alignment:
| Q |
18 |
tatatatatagcattggttcttgtccattaattctacttagatacgttgaacaaatttcttttctttttgagcatcacgaatgtaaaataatttgtcata |
117 |
Q |
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| T |
26595286 |
tatatatatagcattggttcttgtccattaattctacttacatacgttgaacaaatttcgtttctttttgagcatcacgaatgtaaaataattggtcata |
26595385 |
T |
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| Q |
118 |
tatacccaagcatatttcttaactatgtattccatctgaagacaaaagtttatcctctttgattattggtgggtctattgtatttgggacagaaagaagg |
217 |
Q |
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| T |
26595386 |
tatacccaagcatatttcttaactatgtattccaactgaagacaaaagtttatcctctttgattattggtgggtctattgtatttgggacagaaagaagg |
26595485 |
T |
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| Q |
218 |
attaagaatcattacaaatgtgccaattgccacattatcatcgaaaatatcatagaatttttgtgaacacacacaaagtcgtgagcaccttagtttttat |
317 |
Q |
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| T |
26595486 |
attaagaatcattacaaatgtgccaattgccacattatcatcgaaaatatcatagaatttttgtgaacacacacaaagtcgtgagcatcttagtttttat |
26595585 |
T |
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| Q |
318 |
gtaaaattgacaaacttaaaggtttaattgttatataaagatatttatgcaaattagactagctagctagacttaattcaattggtggagcttgtgacaa |
417 |
Q |
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| T |
26595586 |
gtaaaattgacaaacttaaaggtttaattgttatataaagatatttatgcaaattagactagctagctagacttaattcaattggtggagcttgtgacga |
26595685 |
T |
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| Q |
418 |
gatcaaggtttttggaatcaattctaaaccgctgaactttgtctaattgtttaattaaactgtgga--nnnnnnnnnctttcttaaactgtggaaattat |
515 |
Q |
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| T |
26595686 |
gatcaaggtttttggaatcaattctaaaccgttgaactttgtctaattgtttaattaaactgtggatttttttttttctttcttaaactgtggaaattat |
26595785 |
T |
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| Q |
516 |
tgagaatatatccgattaggtgcatcacaggtt |
548 |
Q |
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| T |
26595786 |
tgagaatatatccgattaggtgcatcactggtt |
26595818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 540
Target Start/End: Original strand, 26609639 - 26609681
Alignment:
| Q |
498 |
ttaaactgtggaaattattgagaatatatccgattaggtgcat |
540 |
Q |
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| T |
26609639 |
ttaaactgtggaaattatcgagaatatatccgtttacgtgcat |
26609681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Original strand, 26601636 - 26601680
Alignment:
| Q |
498 |
ttaaactgtggaaattattgagaatatatccgattaggtgcatcac |
543 |
Q |
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| T |
26601636 |
ttaaactgtggaaatcattgagaatatatccg-ttacgtgcatcac |
26601680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 26609002 - 26609082
Alignment:
| Q |
141 |
tatgtattccatctgaagacaaaagttt-atcctctttgattattggtgggtctattgtatttgggacagaaagaaggatt |
220 |
Q |
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| T |
26609002 |
tatgtattccatctgaagggaaaagttggatcctgttcaattatcggtgggtctctagtattcgggacaaaaagaaggatt |
26609082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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