View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10039_low_20 (Length: 367)

Name: NF10039_low_20
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10039_low_20
NF10039_low_20
[»] chr4 (1 HSPs)
chr4 (9-367)||(39948807-39949165)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 367
Target Start/End: Complemental strand, 39949165 - 39948807
Alignment:
Q  9 acatccaatgacaggtctggtatttttagaggctttcttgggttggaaccagaagttaagaaggaaagtggaaaactggagtctcatagacattatggtt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39949165 acattcaatgacaggtctggtatttttagaggctttcttgggttggaaccagaagttaagaaggaaagtggaaaactggagtctcatagacattatggtt 39949066  T
Q  109 agtcaaatatataactaagttactatcaaatcaccacataaaccatactatatatttttatacatttgtttacttttcaaggccaacagaaaggtcggtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39949065 agtcaaatatataactaagttactatcaaatcaccacataaaccatactatatatttttatacatttgtttacttttcaaggccaacagaaaggtcggtt 39948966  T
Q  209 gnnnnnnnnnnnnnnnnnnnnnntgagacctggacttttgtagtggataatgatttctcttatcattgttagattcaaagtgagtttgtacaagaattct 308  Q
    |                      |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39948965 gaaaaaagataaaaaaaaaaaaatgaggcctgaacttttgtagtggataatgatttctcttatcattgttagattcaaagtgagtttgtacaagaattct 39948866  T
Q  309 tccaagtattgtagcatttttcattcagaagcagaaatgtaccaatttaattttgtcat 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39948865 tccaagtattgtagcatttttcattcagaagcagaaatgtaccaatttaattttgtcat 39948807  T

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