View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_21 (Length: 361)
Name: NF10039_low_21
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_21 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 28471153 - 28471486
Alignment:
| Q |
13 |
gagaacacgagacagaaatcgacaacgatattaacttccattgaagccaagtgcgatacacgggattctcttttctcatcaagcgtttcagaacttgagt |
112 |
Q |
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| T |
28471153 |
gagaacacgagacagaaatcgacaacgatattaacttccattgaagccaagtgcgatacacaggattctcttttctcatcaagtgtttcagaacttgagt |
28471252 |
T |
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| Q |
113 |
tgaaaccatagtcacatggttctcaattcgcttcggtacgtggtatgggttcgggtacacggttcgtcacttttgaagatttcggtatgtgagaggtata |
212 |
Q |
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| T |
28471253 |
tgaaaccatagtcacatggttctcaattcgcttcggtacgtggtatgggttcgggtacacagttcgtcacttttgaagatttcggtatgtgagaggtata |
28471352 |
T |
|
| Q |
213 |
catagtcggtacgctatgagttcgtggtaagttttaataaaattaaaatttgtctgaaaacattgatagtgcaagcatgtggtcatcaaatactagc--a |
310 |
Q |
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| T |
28471353 |
catagtcggtacgctatgagttcgtcgtaagttttaataaaattaaaatttgtctgaaaacattgatagtgcaagcatgtggtcatcaaatactagcata |
28471452 |
T |
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| Q |
311 |
gtgtattttgcaaatgtcccacatcggctactact |
345 |
Q |
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| T |
28471453 |
gtgtattttgcaaatgt-ccacatcggctactact |
28471486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 51634662 - 51634783
Alignment:
| Q |
119 |
catagtcacatggttctcaattcgcttcggtacgtggtatgggttcgggtacacggttcgtcacttttgaagatttcggtatgtgagaggtatacatagt |
218 |
Q |
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| T |
51634662 |
catagtcacacggttcgcaattcgcttcggtacgtggtacgggttcgggtacacggttcgtaacatttaaagaattcggtacatagggggtatacatagt |
51634761 |
T |
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| Q |
219 |
cggtacgctatgagttcgtggt |
240 |
Q |
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| T |
51634762 |
cggtacgttatgggctcgtggt |
51634783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 9629268 - 9629374
Alignment:
| Q |
136 |
caattcgcttcggtacgtggtatgggttcgggtacacggttcgtcacttttgaagatttcggtatgtga-gaggtatacatagtcggtacgctatgagtt |
234 |
Q |
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| T |
9629268 |
caattcgcttcgctacatggtacgggttcaggtacgcggttcttcactctcgaataattcggtacttgaggaggtatacacagtcgatacgctatgggtt |
9629367 |
T |
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| Q |
235 |
cgtggta |
241 |
Q |
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| T |
9629368 |
cgtggta |
9629374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 26629279 - 26629393
Alignment:
| Q |
121 |
tagtcacatggttctcaattcgcttcggtacgtggtatgggttcgggtacacggttcgtcacttttgaagatttcggtatgtgagaggtatacatagtcg |
220 |
Q |
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| T |
26629279 |
tagtcacatggtttgcaattcgtttcggtacgtggtatgagttcggatacacggttcgtcactagcaaagaattcggtacgtggatggtatacatagtcg |
26629378 |
T |
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| Q |
221 |
gtacgctatgagttc |
235 |
Q |
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| T |
26629379 |
gtacgtcatgagttc |
26629393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 11307 - 11366
Alignment:
| Q |
120 |
atagtcacatggttctcaattcgcttcggtacgtggtatgggttcgggtacacggttcgt |
179 |
Q |
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| T |
11307 |
atagtcacacagttcacaattcgtttcggtacgtggtacgggttcgggtacgtggttcgt |
11366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 26666364 - 26666418
Alignment:
| Q |
112 |
ttgaaaccatagtcacatggttctcaattcgcttcggtacgtggtatgggttcgg |
166 |
Q |
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| T |
26666364 |
ttgaaaccatagtcacacggttcacaagtcgcatcggtaagtggtacgggttcgg |
26666418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 24662696 - 24662647
Alignment:
| Q |
121 |
tagtcacatggttctcaattcgcttcggtacgtggtatgggttcgggtac |
170 |
Q |
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| T |
24662696 |
tagtcacatggttcacaattcgctttgggacgtggtaagggatcgggtac |
24662647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 33321298 - 33321334
Alignment:
| Q |
139 |
ttcgcttcggtacgtggtatgggttcgggtacacggt |
175 |
Q |
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| T |
33321298 |
ttcgcttcggtacgtggtacgggttcgggtacgcggt |
33321334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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