View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_22 (Length: 343)
Name: NF10039_low_22
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 49538751 - 49538420
Alignment:
| Q |
1 |
tattagtgtgctctagtcaattaactaagcataatcaaatcctccactagtaacctagtaaagtcacaatgtaagtcatatacatttttaatctagacca |
100 |
Q |
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| T |
49538751 |
tattagtgtgctctagtcaattaactaagcataatcaaatcctccactagtaacctagtatattcacaatgtaagtcatatacatttttaatctagacca |
49538652 |
T |
|
| Q |
101 |
ctacaaggaaaaagggtagtaaagtaacataactttgcatgcatgtaatgaagcttcacattcaaaataacaagattaatagaaaacttatcttcattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49538651 |
ctacaaggaaaaagggtagtaaagtaacataactttgcatgcatgtaatgaagcttcacattcaaaataacaagattaatagaaaacttatcttcattga |
49538552 |
T |
|
| Q |
201 |
cattttcaagcatatcacaatactttacattttcccttttgccacccgtctttcttattcacactcattctcatctactccatcctttcttttcactcct |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49538551 |
cattttcaagcatatcacaatactttacatttt-ccttttgccactcgtctttcttattcacactcattctcatctactccatcctttcttttcactcct |
49538453 |
T |
|
| Q |
301 |
tccacaattacttgttgtatataccaagttcct |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
49538452 |
tccacaattacttgttgtatataccaagttcct |
49538420 |
T |
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