View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_23 (Length: 337)
Name: NF10039_low_23
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 28707196 - 28706870
Alignment:
| Q |
1 |
ctaccttccttgcttttaaggctcaacaaatcctttaaatccctctttccctaaataatccgcaagatcgcttcatatggggagagaataacgaatgtga |
100 |
Q |
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| T |
28707196 |
ctaccttccttgcttttaaggctcaacaaatcctttaaatccctctttccctaaataatccgcaagatcgcttcatatggggagagaataacgaatgtga |
28707097 |
T |
|
| Q |
101 |
attttctgttaagtctgcttacaaattccaaaaacgaagaaatgagatgctcaactccaatcaatctgtcatacctcaagagagtaatgaatggagtaaa |
200 |
Q |
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| T |
28707096 |
attttctgttaagtctgcttacaaattccaaaaacgaagaaatgagatgctcaactccaatcaatctgtcatacctcaagagagtaatgaatggagtaaa |
28706997 |
T |
|
| Q |
201 |
ctatggaagcttaaaactattatgcgtcaaatgcaacttatgtggtgtattctacataaaaggttgccggtaagagagtctctatttaaaaaaggagtta |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28706996 |
ctatggaagcttaaaactattatgtgtcaaatgcaacttatgtggtgtattctacataaaaggttgccggtaagagagtctctatttaaaaaaggagtta |
28706897 |
T |
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| Q |
301 |
attgttccccgttgtggtgtgtctgtg |
327 |
Q |
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| T |
28706896 |
attgttccccgttgtggtgtgtctgtg |
28706870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 1171499 - 1171541
Alignment:
| Q |
203 |
atggaagcttaaaactattatgcgtcaaatgcaacttatgtgg |
245 |
Q |
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| T |
1171499 |
atggaagcttaaaacaattctgcgtcatatgcaacttatgtgg |
1171541 |
T |
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