View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10039_low_24 (Length: 336)

Name: NF10039_low_24
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10039_low_24
NF10039_low_24
[»] chr8 (10 HSPs)
chr8 (94-319)||(2982429-2982662)
chr8 (132-244)||(2707759-2707871)
chr8 (133-259)||(2709014-2709140)
chr8 (129-242)||(3004604-3004717)
chr8 (136-244)||(2991581-2991692)
chr8 (123-187)||(3139900-3139964)
chr8 (126-230)||(3168048-3168152)
chr8 (123-187)||(3171533-3171597)
chr8 (125-175)||(2909011-2909061)
chr8 (288-317)||(2707923-2707952)
[»] chr1 (1 HSPs)
chr1 (93-242)||(10753369-10753518)
[»] chr7 (2 HSPs)
chr7 (124-187)||(7161798-7161861)
chr7 (124-245)||(3916874-3916995)
[»] chr6 (2 HSPs)
chr6 (136-175)||(18358071-18358110)
chr6 (209-259)||(18357981-18358031)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 94 - 319
Target Start/End: Complemental strand, 2982662 - 2982429
Alignment:
Q  94 tcggtacctttctaatcccaaagactttcttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgag 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2982662 tcggtacctttctaatcccaaagactttcttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctcacattgttgag 2982563  T
Q  194 ctaagaatggacattcaatgatttctaaggtatgtaagtttgtaagacgtggtattgcctcaggca--------aaatctctacaaccgcacacctcaat 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||    
T  2982562 ctaagaatggacattcaatgatttctaaggtatgtaagtttgtaagacgtggcattgcctcaggcagatcttccaaatctctacaaccgcacacctcaat 2982463  T
Q  286 gtgttgaagtgatgagatgttgcatatccaatat 319  Q
    ||||||||||||||||||||||||||||||||||    
T  2982462 gtgttgaagtgatgagatgttgcatatccaatat 2982429  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 2707759 - 2707871
Alignment:
Q  132 tatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaaggtatgtaag 231  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||  | |  ||||| ||||||   | ||||||||||||||||||||    
T  2707759 tatgtttgggatgtgatcaattttagaccaagttgcacttgtttttgtctgacattcctcaattaagagtggacaactattgatttctaaggtatgtaag 2707858  T
Q  232 tttgtaagacgtg 244  Q
    |||||||||||||    
T  2707859 tttgtaagacgtg 2707871  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 2709014 - 2709140
Alignment:
Q  133 atgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaaggtatgtaagt 232  Q
    |||||||||||||||||||||||||| |||||| |||||| |||| |||||||||  | |  ||||| ||||||| |||||||||||||||||||||| |    
T  2709014 atgtttgggatgtgagcaattttagagcaagttacacttgcttctctctgacattcgtcaattaagagtggacatccaatgatttctaaggtatgtaatt 2709113  T
Q  233 ttgtaagacgtggtattgcctcaggca 259  Q
    ||||||| ||||| ||| | |||||||    
T  2709114 ttgtaaggcgtggcattccgtcaggca 2709140  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 3004717 - 3004604
Alignment:
Q  129 gattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaaggtatgt 228  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || | |||| | |||||||| ||||| |||||||||   |    
T  3004717 gattatgtttgggatgtgagcaattttagaccaaattgcacttgtttctgtctggcattcttcaactaaaagtggacatttaatgaattctaaggtgcat 3004618  T
Q  229 aagtttgtaagacg 242  Q
    ||||| ||||||||    
T  3004617 aagttagtaagacg 3004604  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 2991692 - 2991581
Alignment:
Q  136 tttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgag---ctaagaatggacattcaatgatttctaaggtatgtaagt 232  Q
    |||||||||||||||||||||||||||  ||||| |||||||||| |  |||  | ||   |||||| || |||| |||||||||||||||| |||||||    
T  2991692 tttgggatgtgagcaattttagaccaaagtgcacctgtttctgtcaggaattcattagtatctaagattgaacatccaatgatttctaaggtgtgtaagt 2991593  T
Q  233 ttgtaagacgtg 244  Q
    ||||||||||||    
T  2991592 ttgtaagacgtg 2991581  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 3139900 - 3139964
Alignment:
Q  123 ttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacatt 187  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||||||| ||||| |||||    
T  3139900 ttttaagattatgtttgggatgtgagcaatttttgcccatgttgcacttgtttgtgtctcacatt 3139964  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 3168048 - 3168152
Alignment:
Q  126 taagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaaggta 225  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||  ||||| || | ||||||  |||||| ||| |||||| | ||||    
T  3168048 taagattatgtttgggatgtgagaaattttggaccatgttgcacttgtttgtgtcacacattcttcaactaagaggggacatccaaagatttccagggta 3168147  T
Q  226 tgtaa 230  Q
    |||||    
T  3168148 tgtaa 3168152  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 3171533 - 3171597
Alignment:
Q  123 ttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacatt 187  Q
    |||||||||||||||||| |||||||||||||| | ||| ||||||||||||| ||||| |||||    
T  3171533 ttttaagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacatt 3171597  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 2909011 - 2909061
Alignment:
Q  125 ttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgttt 175  Q
    ||||||||||||||||||||||||||| ||| | |||||| ||| ||||||    
T  2909011 ttaagattatgtttgggatgtgagcaactttgggccaagtagcatttgttt 2909061  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 317
Target Start/End: Original strand, 2707923 - 2707952
Alignment:
Q  288 gttgaagtgatgagatgttgcatatccaat 317  Q
    ||||||||||||||||||||||||||||||    
T  2707923 gttgaagtgatgagatgttgcatatccaat 2707952  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 242
Target Start/End: Original strand, 10753369 - 10753518
Alignment:
Q  93 gtcggtacctttctaatcccaaagactttcttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttga 192  Q
    |||||||||||||| || ||||  |  || || ||||| |||||||||||||||||| ||||||| ||  ||||||||||||||| ||  |||||  | |    
T  10753369 gtcggtacctttctcatgccaataaaatttttgtaagactatgtttgggatgtgagcgattttaggcccggttgcacttgtttctctcaaacattcctca 10753468  T
Q  193 gctaagaatggacattcaatgatttctaaggtatgtaagtttgtaagacg 242  Q
      ||||| |||||||||||||||||||||||| | |||||| ||||||||    
T  10753469 attaagagtggacattcaatgatttctaaggtttttaagttggtaagacg 10753518  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 7161861 - 7161798
Alignment:
Q  124 tttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacatt 187  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||| |||||    
T  7161861 tttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcacatt 7161798  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 3916874 - 3916995
Alignment:
Q  124 tttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaagg 223  Q
    ||||||||||||||||||||||||| ||||||   ||| ||||||||||||| ||||| ||||| || |  |||||  ||||||  ||||||||||| ||    
T  3916874 tttaagattatgtttgggatgtgagaaattttgtgccatgttgcacttgtttgtgtctcacattcttcaattaagaggggacatcgaatgatttctaggg 3916973  T
Q  224 tatgtaagtttgtaagacgtgg 245  Q
    | ||||| || | |||||||||    
T  3916974 tctgtaatttggcaagacgtgg 3916995  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 18358110 - 18358071
Alignment:
Q  136 tttgggatgtgagcaattttagaccaagttgcacttgttt 175  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  18358110 tttgggatgtgagcaattttagaccaagttgcacctgttt 18358071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 18358031 - 18357981
Alignment:
Q  209 caatgatttctaaggtatgtaagtttgtaagacgtggtattgcctcaggca 259  Q
    |||||||||||||||| |||||||||||||||||||| ||| | |||||||    
T  18358031 caatgatttctaaggtgtgtaagtttgtaagacgtggcattccttcaggca 18357981  T

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