View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_25 (Length: 335)
Name: NF10039_low_25
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 43 - 329
Target Start/End: Complemental strand, 47035340 - 47035056
Alignment:
| Q |
43 |
ttgaagaaatcaatttaaaaatttgtttaataagattttataaatcagctgcaacaatttcatgtacaactacgcactagatggactgttttcatcgttc |
142 |
Q |
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| T |
47035340 |
ttgaagaaatcaatttaaaaatttgtttaataagattttataaatcagctgcaacaatttcatgtacaactacgcactagatggactgttttcatcgttc |
47035241 |
T |
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| Q |
143 |
tgtttcnnnnnnngaatatataagtcagagcctggttgatataatgtacgagggttgttcgaaatgtcccaatttctttagctaacacgttttaactaat |
242 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47035240 |
tgtttcaaaaaaagaatatataagtcagagcctggttgatataatgtacgagggttgttcgaaatgtcccaatttctttagctaacacgttttaacta-- |
47035143 |
T |
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| Q |
243 |
attgttgttataaagaacagtagaatagtacgcacattcaacaaataaataacaaaaccataaaacacatgttaactaaacaccaaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47035142 |
attgttgttataaagaacagtagaatagtacgcacattcaacaaataaataacaaaacaataaaacacatgttaactaaacaccaaa |
47035056 |
T |
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