View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_26 (Length: 332)
Name: NF10039_low_26
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_26 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 45175361 - 45175049
Alignment:
| Q |
20 |
ggaaagattgtcatactacatggagtaccctctagcattgtgtgagacagatatctgaagtttacttcccacttgcggggagcattataggaggctttgg |
119 |
Q |
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| T |
45175361 |
ggaaagattgtcatactacatggagtaccctctagcattgtgtgagacagatatctgaagtttacttcccacttgcggggagcattataggaggctttgg |
45175262 |
T |
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| Q |
120 |
gtgcggagctgagattgaactcagcctatcatcctcaaactgatagataaaccgagaccattcagacctttggaggatatctgagggcttgtgtattaga |
219 |
Q |
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| T |
45175261 |
gtgcggagctgagattgaactcagcctatcatcctcaaactgatagataaaccgagaccattcagacctttggaggatatctgagggcttgtgtattaga |
45175162 |
T |
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| Q |
220 |
tgaacgcagaagctgggaccgtgaggcattgtatggacgaaagtgccaaactcgactgtgtttgtaccaagttggtgaaagttggaatgtaggaccttaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45175161 |
tgaacgcagaagctgggaccgtgaggcattgtatggacggaagtgccagactcgactgtgtttgtaccaagttggtgaaagttggaatgtaggaccttaa |
45175062 |
T |
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| Q |
320 |
tttgtactaatac |
332 |
Q |
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||||||||||||| |
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| T |
45175061 |
tttgtactaatac |
45175049 |
T |
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