View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_3 (Length: 533)
Name: NF10039_low_3
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 20 - 521
Target Start/End: Original strand, 41559114 - 41559616
Alignment:
| Q |
20 |
gaccatgctattaatgatatatgtgtcttgatgcagtgcagccgccataacctcaatgtggtagattttctgcacttcatcaatttatttctgtttttat |
119 |
Q |
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| T |
41559114 |
gaccatgctattaatgatatatgtgtcttgatgcagtgcagccgccataacctcaatgtggtagattttctgcacttcatcaatttatttctgtttttat |
41559213 |
T |
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| Q |
120 |
tttcgtttggatctcttaatttggtggattttggagaataaaagcatcaactgatttttacagtatgtttttcttgctgtatattcatttcaaatagaaa |
219 |
Q |
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| T |
41559214 |
tttcgtttggatctcttaatttggtggattttggtgaataaaagcatcaactgatttttacagtatgtttttcttgctgtatattcatttcaaatagaaa |
41559313 |
T |
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| Q |
220 |
gttaaccatgtttcgtcgttactttcannnnnnnnnn-gtaggtttctgccgggaatgggtacgtgatgagatcacactcaatcatggaaaatgcactat |
318 |
Q |
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| T |
41559314 |
gttaaccatgtttcgtcgttactttcatttttttttttgtaggtttctgccgggaatgggtacgtgatgagatcacactcaatcatggaaaatgcactat |
41559413 |
T |
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| Q |
319 |
tttatgatgtgtacatttgcataaaacaaattatcgccactcacactgtgaatccctggccctgatgcatctaaaagttatgaacatcaaaggatagtac |
418 |
Q |
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| T |
41559414 |
tttatgatgtgtacatttgcataaaacaaattatcgccactcacactgtgaatccctggccctgatgcatctaaaagttatgaacatcaaaggatagtac |
41559513 |
T |
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| Q |
419 |
atattggttttttggaattctgagaccttctgttgttttcacaaatttcattgatatcaaaatgatgtcaatgatgaaatatgattcttcctagtctctg |
518 |
Q |
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| T |
41559514 |
atattggttttttggaattctgagaccttctgttgttttcacaaatttcattgatatcaaaataatgtcaatgatgaaatatgattcttcctagtctgtg |
41559613 |
T |
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| Q |
519 |
ctt |
521 |
Q |
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||| |
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| T |
41559614 |
ctt |
41559616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 41542970 - 41543268
Alignment:
| Q |
20 |
gaccatgctattaatgatatatgtgtcttgatgcagtgcagccgccataacctcaatgtggtagattttctgcacttcatcaatttatttctgttttta- |
118 |
Q |
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| T |
41542970 |
gaccatgctattaatgatatatgtgtccggatgcagtgcagtcgccataacctcaatgtggtagattttctgcacttcatcgatttatttctgtttttag |
41543069 |
T |
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| Q |
119 |
ttttcgtttggatctcttaatttggtggattttggagaataaaagcatcaactgatttttacagtatgtttttcttgctgtatattcatttcaaatagaa |
218 |
Q |
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| T |
41543070 |
ttttagtttggatctcttaatccggtggattttggtgaatataaccattatctgatttttatagtatgtttctcttgctgaatattcatttcaaatagga |
41543169 |
T |
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| Q |
219 |
agttaaccatgtttcgtcgttacttt-cannnnnnnnnngtaggtttctgccgggaatgggtacgtgatgagatcacactcaatcatggaaaatgcact |
316 |
Q |
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| T |
41543170 |
agttaaccatgtttcgtcgttattttccttttactttttgtaggtttctgccgggaatgggtacttgatgagatcacactcaatcatggaatatgcact |
41543268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 41543327 - 41543416
Alignment:
| Q |
314 |
actattttatgatgtgtacatttgcataaaacaaattatcgccactcacactgtgaatccctggccctgatgcatctaaaagttatgaac |
403 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| | | ||| |||||||||||||||||||||||| |||| ||||| |
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| T |
41543327 |
actattttatgatgtgtacatttgtataaaacaaattatcgccagtgatgctgcaaatccctggccctgatgcatctaagagttctgaac |
41543416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 436 - 505
Target Start/End: Original strand, 41543417 - 41543486
Alignment:
| Q |
436 |
ttctgagaccttctgttgttttcacaaatttcattgatatcaaaatgatgtcaatgatgaaatatgattc |
505 |
Q |
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| T |
41543417 |
ttctgagaccttctgttgttttcacaaacttcattgatatcataatgatgtcagtgataaaatatgattc |
41543486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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