View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_39 (Length: 241)
Name: NF10039_low_39
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 32450498 - 32450290
Alignment:
| Q |
13 |
cacattaaaaatgaaagattatattctaaccaaggaaagggagatcaaaagaaagacnnnnnnntccctagtccttaatataatcatataattacccaaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32450498 |
cacattaaaaatgaaagattatattctaaccaaggaaaggg-gatcaaaagaaagacaaaaaaatccctagtccttaatataatcatataattacccaaa |
32450400 |
T |
|
| Q |
113 |
aaagaagaaatattttttggaatttttcatggctcatcagtccacctagcaccctatttccaaaaatatatttacgaggcaccacctgtccctaacatga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32450399 |
aaagaagaaatattttttggaatttttcatggctcatcagtccacctagcaccctatttccaaaaatatatttacgaggcaccacctgtccctaacatga |
32450300 |
T |
|
| Q |
213 |
cgatccactc |
222 |
Q |
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|||||||||| |
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| T |
32450299 |
cgatccactc |
32450290 |
T |
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