View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_46 (Length: 237)
Name: NF10039_low_46
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 9635858 - 9636077
Alignment:
| Q |
1 |
aacgaccattttgtttcattcttccctcaaannnnnnnncattccttaaaaataaaactttatttcttggtgccgaagtagaaccgttttgataaataaa |
100 |
Q |
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| T |
9635858 |
aacgacaattttgtttcattcttccctcaatttttttttcattccttaaaaataaaactttatttcttggtgccgaagtagaaccgttttggtaaataaa |
9635957 |
T |
|
| Q |
101 |
tatatagtatgtccctattttgcaattgtatgttgtacgctcatgtttaaatagtttataaaatatttcgaaatactacaatttttatccgggggaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9635958 |
tatatagtatgtccctattttgcaattgtatgttgtacgctcatgtttaaatagtttataaaatatttcgaaatactacaatttttatccgggggaaata |
9636057 |
T |
|
| Q |
201 |
ctacaccttttattggtaaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
9636058 |
ctacaccttttattggtaaa |
9636077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 18370655 - 18370839
Alignment:
| Q |
40 |
cattccttaaaaataaaactttatttcttggtgccgaagtagaaccgttttgataaataaatatatagtatgtccctattttgcaattgtatgttgtacg |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| | |
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| T |
18370655 |
cattccttaaaaataaaactttatttcttggtgccgaagtagaaccgttttggtaaataaatatatagtatgtccctattttccaattgtatgtcgtatg |
18370754 |
T |
|
| Q |
140 |
ctcatgtttaaatagtttataaaata-tttcgaaatactacaatttttatccgggggaaatactacaccttttattggtaaaaaa |
223 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
18370755 |
ctcatgttaaaatagtttataaaatattttcgaaatactacactttttttccaggggaaatactacaccttttattggtaaaaaa |
18370839 |
T |
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