View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10039_low_47 (Length: 236)
Name: NF10039_low_47
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49538776 - 49538998
Alignment:
| Q |
1 |
tttgttaacgatatgagacaacaaattctaaaagatccaagccgctgcctccaaccaaacaccaaaagcaaaatgaaatcttaaaccaactcaagagttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49538776 |
tttgttaacgatatgagacaacaaattctaaaagatccaagccgctgcctccaaccaaacaccaaaagcaaaatgaaatcttaaaccaactcaagagttc |
49538875 |
T |
|
| Q |
101 |
ccaataaattcatcaatagaatcacgacattacacttccttatccttcaatccaagtggcataaaataacacctaaacaagaccggtccaaaaggctaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49538876 |
ccaataaattcatcaatagaatcacgacattacacttccttatccttcaatccaagtggcataaaataacacctaaacaagaccggtccaaaaggctaga |
49538975 |
T |
|
| Q |
201 |
cagacaatttgctagttttacat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
49538976 |
cagacaatttgctagttttacat |
49538998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University