View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_5 (Length: 493)
Name: NF10039_low_5
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 22 - 387
Target Start/End: Original strand, 39656072 - 39656432
Alignment:
| Q |
22 |
gtccccactcaaccaccacctgtagcaatctccatttcagctgtgtttgatttctctacaactaccaaatgattttcacagcgatacataaaaaatcaaa |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||| |
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| T |
39656072 |
gtccccactcaaccaccacctgtagcaatctccatttcagttgtgttttatttctctacaagtaccaaatgattttcacagcgatacacagaaaatcaaa |
39656171 |
T |
|
| Q |
122 |
agtttcttttaaatgttgatattaatctccctaaacacaatcatcatttgaaaaagctatttatgttaatgtttgagaaaaagtccagtgaataatgaac |
221 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39656172 |
agtttctttccaatgttgatattaatctccctaaacacaatcatcatttgaaaaagctatttatgttaatgtttgagaaaaagtccagtgaataatgaac |
39656271 |
T |
|
| Q |
222 |
tgatatgagtcatttaagtttgttcaaatgtttcaaatcaagcggttatcttatgaacaacaatagagaattttcacaagccaacgtcgttgctctctga |
321 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
39656272 |
tgatatgagtcatataagtttgttcaaatatttcaaatcaagcggttatcttatgaacaacaatagagaattttcgcaagcca-----gttgctctctga |
39656366 |
T |
|
| Q |
322 |
attaaattgaaactaaattctactactgttaattttagaaaaagcgttggagagtagaaatttgat |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39656367 |
attaaattgaaactaaattctactactgttaattttagaaaaagcgttggagagtagaaatttgat |
39656432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 34364895 - 34365077
Alignment:
| Q |
22 |
gtccccactcaaccaccacctgtagcaatctccatttcagctgtgtttgatttctctacaactaccaaatgattttcacagcgatacataaaaaatcaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |
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|
| T |
34364895 |
gtccccactcaaccaccacctgtagcaatctccatttcagttgtgtttgatttctctacaactaccaaatgattttcacagccatacacagaaaatcaaa |
34364994 |
T |
|
| Q |
122 |
agtttcttttaaatgttgatattaatctccctaaacacaatcatcatttgaaaaagctatttatgttaatgtttgagaaaaag |
204 |
Q |
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|| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34364995 |
agcttctttccaatgttgatattaatcaccctaaacacaatcatcatttgaaaaagctatttatgttaatgtttgagaaaaag |
34365077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 447 - 488
Target Start/End: Complemental strand, 30930432 - 30930391
Alignment:
| Q |
447 |
aaatctggatctgaaaatcccatttcccgtctctctgcttct |
488 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
30930432 |
aaatctagatctgaaaatcccatttcccgtctctttgcttct |
30930391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 3312175 - 3312210
Alignment:
| Q |
153 |
taaacacaatcatcatttgaaaaagctatttatgtt |
188 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
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|
| T |
3312175 |
taaacacaatcatcatttcaaaaagctatttatgtt |
3312210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 22 - 387
Target Start/End: Complemental strand, 3821276 - 3820916
Alignment:
| Q |
22 |
gtccccactcaaccaccacctgtagcaatctccatttcagctgtgtttgatttctctacaactaccaaatgattttcacagcgatacataaaaaatcaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||| |
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| T |
3821276 |
gtccccactcaaccaccacctgtagcaatctccatttcagttgtgttttatttctctacaagtaccaaatgattttcacagcgatacacagaaaatcaaa |
3821177 |
T |
|
| Q |
122 |
agtttcttttaaatgttgatattaatctccctaaacacaatcatcatttgaaaaagctatttatgttaatgtttgagaaaaagtccagtgaataatgaac |
221 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3821176 |
agtttctttccaatgttgatattaatctccctaaacacaatcatcatttgaaaaagctatttatgttaatgtttgagaaaaagtccagtgaataatgaac |
3821077 |
T |
|
| Q |
222 |
tgatatgagtcatttaagtttgttcaaatgtttcaaatcaagcggttatcttatgaacaacaatagagaattttcacaagccaacgtcgttgctctctga |
321 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
3821076 |
tgatatgagtcatataagtttgttcaaatatttcaaatcaagcggttatcttatgaacaacaatagagaattttcgcaagcca-----gttgctctctga |
3820982 |
T |
|
| Q |
322 |
attaaattgaaactaaattctactactgttaattttagaaaaagcgttggagagtagaaatttgat |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3820981 |
attaaattgaaactaaattctactactgttaattttagaaaaagcgttggagagtagaaatttgat |
3820916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 22 - 387
Target Start/End: Original strand, 39987691 - 39988055
Alignment:
| Q |
22 |
gtccccactcaaccaccacctgtagcaatctccattt-cagctgtgtttgatttctctacaactaccaaatgattttcacagcgatacataaaaaatcaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| || | |||||||| |
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|
| T |
39987691 |
gtccccactcaaccaccacctgtagcaatctccattttcagttgtgttttatttctctacaactaccaaatgattttcacagcgatgcacataaaatcaa |
39987790 |
T |
|
| Q |
121 |
aagtttcttttaaatgttgatattaatctccctaaacacaatcatcatttgaaaaagctatttatgttaatgtttgagaaaaagtccagtgaataatgaa |
220 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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|
| T |
39987791 |
aagtttctttccaatgttgatattaatctccctaaacacaatcatcatttgaaaaagctatttatgttaatgtttgagaaaaagtccaatgaataataaa |
39987890 |
T |
|
| Q |
221 |
ctgatatgagtcatttaagtttgttcaaatgtttcaaatcaagcggttatcttatgaacaacaatagagaattttcacaagccaacgtcgttgctctctg |
320 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |
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| T |
39987891 |
ctgatatgagtcatataagtttgttcaaatgtttcaaatcaagcggttatcttatgaacaacaatagagaattttcgcaaggcagcgtcgttgctctctg |
39987990 |
T |
|
| Q |
321 |
aattaaattgaaactaaattctactactgttaattttagaaaaagcgttggagagtagaaatttgat |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
39987991 |
aattaaattgaaactaaattctactactgttaattttagaaaaagcgttg--gagtagaaatttgat |
39988055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 488
Target Start/End: Original strand, 16250264 - 16250305
Alignment:
| Q |
447 |
aaatctggatctgaaaatcccatttcccgtctctctgcttct |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
16250264 |
aaatctggatctgaaaatcccatttcccgtctctttgcttct |
16250305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 488
Target Start/End: Original strand, 14168046 - 14168087
Alignment:
| Q |
447 |
aaatctggatctgaaaatcccatttcccgtctctctgcttct |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14168046 |
aaatctggatctgaaaatcccatttcccgtctctttgcttct |
14168087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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