View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_50 (Length: 230)
Name: NF10039_low_50
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 25742944 - 25742729
Alignment:
| Q |
1 |
acgtataattcaatgtaattgtatgtgtcggtatcggatagagttaaaggaacgtacatagcagcaacagcagcaaagaatccgaagaaagaagctccaa |
100 |
Q |
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| T |
25742944 |
acgtataattcaatgtaattatatgtgtcggtatcggatagagttaaaggaacgtacatagcagcaacagcagcaaagaatccgaagaaagaagctccaa |
25742845 |
T |
|
| Q |
101 |
agccgcctgcaccagctaatttgatggcatgattagcgagtttactagcagcttcactcaggtctttgaaatctgagttcataatctgaactgcttcttc |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25742844 |
agccgcctacaccagctaatttgatggcatgattagcgagtttactagcagcttcactcaggtctttgaaatctgagttcataatctgaactgcttcttc |
25742745 |
T |
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| Q |
201 |
ttgaacattctttctg |
216 |
Q |
| |
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||||| |||| ||||| |
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| T |
25742744 |
ttgaaaattcattctg |
25742729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 25739370 - 25739175
Alignment:
| Q |
13 |
atgtaattgtatgtgtcggtatcggatagagttaaagg-aacgtacatagcagcaacagcagcaaagaatccgaagaaagaagctccaaagccgcctgca |
111 |
Q |
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|||||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| |||| | | |
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| T |
25739370 |
atgtaattatatatgtcggtgtcggatagagttaaaggtaacgtacatagcagcaacagcagcaaagaatccaaagaaagaacctccccagcc---tata |
25739274 |
T |
|
| Q |
112 |
ccagctaatttgatggcatgattagcgagtttactagcagcttcactcaggtctttgaaatctgagttcataatctgaactgcttcttcttgaacattc |
210 |
Q |
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||||| |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
25739273 |
ccagcgaatttgatggcatgattagcgagtctgctagcaacttcactcaggtctttgaaatctgagttcataacctgaactgcttcttcttgaaaattc |
25739175 |
T |
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