View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_51 (Length: 228)
Name: NF10039_low_51
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 11983977 - 11984186
Alignment:
| Q |
7 |
tagtggccaacacgtactcaaataaacatatgggaaggtgaaaatgtggtgaccagggtttgaacccgagattccatatataatgtcctcacaccaaaac |
106 |
Q |
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| T |
11983977 |
tagtggccaacacatactcaaataaacacatgggaaggtgaaaatgtggtgaccagggtttgaaccaaagattccatatataatgtcctcacaccaaaac |
11984076 |
T |
|
| Q |
107 |
cattaggccgtaacaacaaggacacacaaattattaatcgttgtccattagccgattaatctttgactgaagatatcaacggcaaagagggtagtttgct |
206 |
Q |
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| T |
11984077 |
cattaggccgtaacaacgaggacacacaaatttttaatcgttgtccattagccgattaatctttgactgaagatctcaacggcaaagagggtagtttgct |
11984176 |
T |
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| Q |
207 |
ctcatactct |
216 |
Q |
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|||||||||| |
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| T |
11984177 |
ctcatactct |
11984186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 35981547 - 35981486
Alignment:
| Q |
47 |
aaaatgtggtgaccagggtttgaacccgagattccatatataatgtcctcacaccaaaacca |
108 |
Q |
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| T |
35981547 |
aaaatgtggtgacccgggtttgaacccgagattccatataaaatgtcttcacagccaaacca |
35981486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 8575814 - 8575741
Alignment:
| Q |
46 |
gaaaatgtggtgaccagggtttgaacccgagattccatatataatgtcctcacaccaaaaccattaggccgtaa |
119 |
Q |
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| T |
8575814 |
gaaagtgtggagacccgggtttgaacccgggattccatataaaatatcctcacagccaaaccattaggctgtaa |
8575741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 29938979 - 29938862
Alignment:
| Q |
7 |
tagtggccaacacgtactcaaataaacatatg--ggaaggtgaaaatgtggtgaccagggtttgaacccgagattccatatataatgtcctcacaccaaa |
104 |
Q |
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|||||| ||||| |||||||||||||| ||| |||||| | || |||||||||| |||||||||||||| ||| || ||| |||||||||||| | || |
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| T |
29938979 |
tagtggtcaacatatactcaaataaacacatgtaggaagggggaa-tgtggtgacctgggtttgaacccgaaatttcacataaaatgtcctcacaaccaa |
29938881 |
T |
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| Q |
105 |
accattaggccgtaacaac |
123 |
Q |
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|||| |||| |||||||| |
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| T |
29938880 |
accactaggttgtaacaac |
29938862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 26772701 - 26772751
Alignment:
| Q |
5 |
catagtggccaacacgtactcaaataaacatatgggaaggtgaaaatgtgg |
55 |
Q |
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| T |
26772701 |
catagtggccaacacatactcaaataaacacatggggagggggaaatgtgg |
26772751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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