View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_52 (Length: 223)
Name: NF10039_low_52
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_52 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 11820 - 12008
Alignment:
| Q |
14 |
cataggcaaaccataatggtctttgaagaaaggttcccaaataaactcaaataaagaattcgaccatcaagcacccataatcaagtgtccatgattcaca |
113 |
Q |
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||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || |
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| T |
11820 |
catagacaaaccataacggtctttaaagaaaggttcccaaataaactcaaataaagaattcgaccatcaagcacccagaatcgagtgtccatgattcgca |
11919 |
T |
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| Q |
114 |
agtttatcagcacc-gttattgaaaaatatgagaagatcgacttgatcaacaagcataaaatcacattccagctagaggttaaaccaaccctt |
205 |
Q |
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| T |
11920 |
agtttatcagcaccaattattgaaaaatatgagaa----gacttgatcaacaagcataaaatcacattccagctagaggttaaaccaaccctt |
12008 |
T |
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Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 21367295 - 21367483
Alignment:
| Q |
14 |
cataggcaaaccataatggtctttgaagaaaggttcccaaataaactcaaataaagaattcgaccatcaagcacccataatcaagtgtccatgattcaca |
113 |
Q |
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||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || |
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| T |
21367295 |
catagacaaaccataacggtctttaaagaaaggttcccaaataaactcaaataaagaattcgaccatcaagcacccagaatcgagtgtccatgattcgca |
21367394 |
T |
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| Q |
114 |
agtttatcagcacc-gttattgaaaaatatgagaagatcgacttgatcaacaagcataaaatcacattccagctagaggttaaaccaaccctt |
205 |
Q |
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| T |
21367395 |
agtttatcagcaccaattattgaaaaatatgagaa----gacttgatcaacaagcataaaatcacattccagctagaggttaaaccaaccctt |
21367483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 23901274 - 23901086
Alignment:
| Q |
14 |
cataggcaaaccataatggtctttgaagaaaggttcccaaataaactcaaataaagaattcgaccatcaagcacccataatcaagtgtccatgattcaca |
113 |
Q |
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||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || |
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| T |
23901274 |
catagacaaaccataacggtctttaaagaaaggttcccaaataaactcaaataaagaattcgaccatcaagcacccagaatcgagtgtccatgattcgca |
23901175 |
T |
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| Q |
114 |
agtttatcagcacc-gttattgaaaaatatgagaagatcgacttgatcaacaagcataaaatcacattccagctagaggttaaaccaaccctt |
205 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23901174 |
agtttatcagcaccaattattgaaaaatatgagaa----gacttgatcaacaagcataaaatcacattccagctagaggttaaaccaaccctt |
23901086 |
T |
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