View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_54 (Length: 217)
Name: NF10039_low_54
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 831902 - 832095
Alignment:
| Q |
5 |
tggagaagcagagacacagaaaaacaatggaggaaagaattgtatatggttctatatataggtagcaagatctgggacaagacaatcttgtttcatctgc |
104 |
Q |
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| T |
831902 |
tggagaaacaaaaacacagaaaaacaatggaggaaagaattgtatatggttctatatataggtagcaagatctgggacaagacaatcttgtttcatctgc |
832001 |
T |
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| Q |
105 |
cgaaagaattaatagtggtataaacttgcctttcttgattagacaactcagaacagaatacatacatagacattgtatttgtcgattcatcttg |
198 |
Q |
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| T |
832002 |
cgaaagaattaatagtggtataaacttgcctttcttgattagacaactcagaacagaatacatacatagacattgtatttgtcgattcatcttg |
832095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 799274 - 799429
Alignment:
| Q |
24 |
aaaaacaatggaggaaagaattgtatatggttctatatataggtagcaagatctgggacaagacaatcttgtttcatctgccgaaaga-attaatagtgg |
122 |
Q |
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| T |
799274 |
aaaaacaatggaggaaagaattacatacggtgc----tataggtaacaagatccggaactagaccatcatgtttcatctgccgaaagagtttcatggtgg |
799369 |
T |
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| Q |
123 |
tat-aaacttgcctttcttgattagacaactcagaacagaa-tacatacatagacattgt |
180 |
Q |
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| T |
799370 |
tatcaaacttgcctttcttgataagacaactgagaacagaattacatacatagacattgt |
799429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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