View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10039_low_58 (Length: 205)

Name: NF10039_low_58
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10039_low_58
NF10039_low_58
[»] chr3 (16 HSPs)
chr3 (17-205)||(24840127-24840315)
chr3 (18-203)||(19943498-19943684)
chr3 (17-203)||(20005153-20005324)
chr3 (36-205)||(19818334-19818503)
chr3 (56-199)||(26651816-26651959)
chr3 (37-205)||(19812057-19812225)
chr3 (49-204)||(19955853-19956008)
chr3 (27-205)||(19857847-19858026)
chr3 (49-204)||(19838162-19838317)
chr3 (28-205)||(19853289-19853466)
chr3 (113-205)||(19989299-19989391)
chr3 (36-205)||(19950901-19951070)
chr3 (113-201)||(26646791-26646879)
chr3 (125-201)||(19848768-19848844)
chr3 (49-205)||(20045900-20046056)
chr3 (116-198)||(20016451-20016533)
[»] chr6 (1 HSPs)
chr6 (43-203)||(34408266-34408427)
[»] chr1 (1 HSPs)
chr1 (55-203)||(1716993-1717141)
[»] chr5 (2 HSPs)
chr5 (114-205)||(38435381-38435472)
chr5 (113-205)||(9814814-9814906)
[»] chr8 (1 HSPs)
chr8 (43-205)||(22652267-22652429)
[»] chr4 (1 HSPs)
chr4 (109-159)||(6397983-6398033)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 24840127 - 24840315
Alignment:
Q  17 ctctcttggctttcaatgttgatgagcttctgttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagcccc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24840127 ctctcttggctttcaatgttgatgagcttctgttccacctctctcatctcttgatcttcaaggtgggcgaaaacaggaagaccaaagagagagtagcccc 24840226  T
Q  117 ccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24840227 ccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacc 24840315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 19943684 - 19943498
Alignment:
Q  18 tctcttggctttcaatgttgatgagcttctgttccacctctctcatctcttgatcttcaagctgggcgaaaa-caggaagaccaaagagagagtagcccc 116  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||| |||| ||||| ||||| |||||||||||||||| ||||    
T  19943684 tctcttggctttcaatgctgatgagcttctgttccacctttctaatctcctgatcttcaagttgggtgaaaaacaggatgaccaaagagagagtatcccc 19943585  T
Q  117 ccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaa 203  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19943584 ccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctcaacaa 19943498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 20005153 - 20005324
Alignment:
Q  17 ctctcttggctttcaatgttgatgagcttctgttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagcccc 116  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||| ||||||||||               || ||||    
T  20005153 ctctcttggctttcaatgttgacgagcttctgttcgacctctctcatctcctgatcttcaagttgggtgaaaacagga---------------taacccc 20005237  T
Q  117 ccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaa 203  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20005238 ccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctcaacaa 20005324  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 19818503 - 19818334
Alignment:
Q  36 tgatgagcttctgttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctc 135  Q
    |||||||||||| ||| ||||||||||| |||||||||| ||  | |  ||||||||||  ||||| || ||  || ||||||||||| |||||||||||    
T  19818503 tgatgagcttcttttcaacctctctcatttcttgatctttaactttgatgaaaacaggatcaccaatgataggataaccccccaaaactatgacatcctc 19818404  T
Q  136 caaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacc 205  Q
    ||||||||| ||||| ||||||||| |||| || |||||||| || ||||||||||||||||||||||||    
T  19818403 caaagtgatagttgcctcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaacc 19818334  T

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Target: chr3; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 26651959 - 26651816
Alignment:
Q  56 tctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcac 155  Q
    |||||||||||  |||| ||||| ||||  |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26651959 tctctcatctccggatcatcaagttgggtaaaaacaggataaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcctcac 26651860  T
Q  156 caaatagaaacacgaaggtgtttgtttcacaacaccatttctca 199  Q
    ||||  |||| || |||   ||||| |||| |||||||||||||    
T  26651859 caaaaggaaaaacaaagcaatttgtctcactacaccatttctca 26651816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 19812225 - 19812057
Alignment:
Q  37 gatgagcttctgttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctcc 136  Q
    ||||||||||| ||||||||||||||| ||||| |||| ||  | ||  |||| ||||  ||||| || || ||| ||||||||||| || | |||||||    
T  19812225 gatgagcttcttttccacctctctcatttcttggtcttgaactttggtaaaaataggatcaccaatgatagggtaaccccccaaaaccataatatcctcc 19812126  T
Q  137 aaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacc 205  Q
    |||||||| ||||||||||||||| |||| || |||||||| || ||||||||||||||||||||||||    
T  19812125 aaagtgatagttgcttcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaacc 19812057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 19956008 - 19955853
Alignment:
Q  49 ttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgtt 148  Q
    ||||||||||||||| ||||| ||||  |  | || |||||||| |  ||||| || || ||| ||||||||||| |||||||| |||||||||||||||    
T  19956008 ttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgtt 19955909  T
Q  149 gcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaac 204  Q
    || ||||||||| ||||||| || || ||||| |||||||||||||||||||||||    
T  19955908 gcctcaccaaatggaaacacaaatgtatttgtctcacaacaccatttctcaacaac 19955853  T

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Target: chr3; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 19858026 - 19857847
Alignment:
Q  27 tttcaatgttgatgagcttctgttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaat 126  Q
    |||||||||||||||||||||||||||| |||  ||| || |||||||| ||  |   ||||||||||  ||||||||||||||| ||||||||||| |     
T  19858026 tttcaatgttgatgagcttctgttccacatcttgcatttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccac 19857927  T
Q  127 gacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtt-tgtttcacaacaccatttctcaacaacc 205  Q
     |||||||| | ||| |||||||||||||||||  |||||||||| || ||  || ||| |||||||||| |||||||||    
T  19857926 aacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaacc 19857847  T

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Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 19838317 - 19838162
Alignment:
Q  49 ttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgtt 148  Q
    ||||||||||||||| ||||| ||||  |  | || |||||||| |  ||||| || || ||| ||||||||||| |||||||| |||||||||||||||    
T  19838317 ttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgtt 19838218  T
Q  149 gcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaac 204  Q
    || ||||||||| ||||||| || || || || ||||| |||||||||||||||||    
T  19838217 gcctcaccaaatggaaacacaaatgtattggtctcacagcaccatttctcaacaac 19838162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 19853466 - 19853289
Alignment:
Q  28 ttcaatgttgatgagcttctgttccacctctctcatctct-tgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaat 126  Q
    ||||||||||||||||||||| |||| |||| |||| ||| |||||||||||      ||||| ||||  ||||| || || ||| ||||||||||| ||    
T  19853466 ttcaatgttgatgagcttctgctccaactctttcat-tctctgatcttcaagtgatttgaaaataggatcaccaatgatagggtaaccccccaaaaccat 19853368  T
Q  127 gacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacc 205  Q
     |||||||||||||| |||||||||||||||||| | ||||| || || || || ||| |||||||||| |||||||||    
T  19853367 aacatcctccaaagttattgttgcttcaccaaatgggaacacaaatgtattggtctcagaacaccatttgtcaacaacc 19853289  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 19989391 - 19989299
Alignment:
Q  113 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacc 205  Q
    ||||| ||||| || ||||| ||||||||||| ||||| ||||||||| |||| || || |||||||| ||||||||||||||||||||||||    
T  19989391 ccccctaaaaccataacatcttccaaagtgatagttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaacc 19989299  T

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Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 19951070 - 19950901
Alignment:
Q  36 tgatgagcttctgttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctc 135  Q
    |||||||||| | ||| |||||| |||| |||||||||| |||      ||||||||||  |||||  | || ||| ||||||||||| || ||||||||    
T  19951070 tgatgagcttttcttcaacctctttcatttcttgatcttgaagtgtaatgaaaacaggatcaccaagaacagggtaaccccccaaaaccataacatcctc 19950971  T
Q  136 caaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacc 205  Q
    ||||||||| ||||| ||||||||| ||||||| || || || || |||  |||||||||||||||||||    
T  19950970 caaagtgatagttgcctcaccaaatggaaacacaaatgtattggtctcagtacaccatttctcaacaacc 19950901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 26646879 - 26646791
Alignment:
Q  113 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaac 201  Q
    ||||||||||| |||| |||||||||||| || ||||||||||||||   || ||| ||||| ||||| ||||||||||||||||||||    
T  26646879 ccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaac 26646791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 19848844 - 19848768
Alignment:
Q  125 atgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaac 201  Q
    |||| ||||||||||||||||||||||||||||||   |||||| ||||| ||||| | |  |||||||||||||||    
T  19848844 atgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggtatttgtattaggacaccatttctcaac 19848768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 20046056 - 20045900
Alignment:
Q  49 ttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgtt 148  Q
    ||||||||||||||| ||||| |||| ||  | || ||||||| ||   |||| || || ||| || ||||||||||||| ||||||||| || ||||||    
T  20046056 ttccacctctctcatttcttggtctttaactttggtgaaaacatgatcgccaatgatagggtaacctcccaaaacaatgatatcctccaaggttattgtt 20045957  T
Q  149 gcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacc 205  Q
    |  ||||||||  |||| |  || || ||||| ||||||||||||||||| ||||||    
T  20045956 gtctcaccaaagggaaaaataaatgtatttgtatcacaacaccatttctccacaacc 20045900  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 20016451 - 20016533
Alignment:
Q  116 cccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 198  Q
    |||||||| || | |||||||||||||||||| |||||| ||||| ||||||| || || ||||| | | |||||||||||||    
T  20016451 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 20016533  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 34408266 - 34408427
Alignment:
Q  43 cttctgttccacctctctcatctcttgatcttcaagctgggc-gaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagt 141  Q
    ||||||||||||||||| ||| |||||||||||||| || || ||||||||||   | |||| ||||||| ||| ||||||| || ||||| ||||||||    
T  34408266 cttctgttccacctctcccatttcttgatcttcaag-tgtgctgaaaacaggatctcgaaagtgagagtatccctccaaaaccatcacatcatccaaagt 34408364  T
Q  142 gattgttgcttcacc-aaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaa 203  Q
    ||||||| | ||||| ||| | |||||| ||||| ||||| ||||||||| ||| ||| ||||    
T  34408365 gattgttccatcacctaaagaaaaacacaaaggtatttgtctcacaacactattactcgacaa 34408427  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 1717141 - 1716993
Alignment:
Q  55 ctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttca 154  Q
    |||| |||| ||||| |||||||||    |||||||||||  ||||| || || |||  |||| ||||| || | |||||||||||||||||| ||||||    
T  1717141 ctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaatcccctaaaaccataatatcctccaaagtgattgtggcttca 1717042  T
Q  155 ccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaa 203  Q
    |||||  ||||||| || || ||||| |||||||||||||| |||||||    
T  1717041 ccaaaaggaaacacaaatgtatttgtctcacaacaccatttttcaacaa 1716993  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 38435381 - 38435472
Alignment:
Q  114 cccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacc 205  Q
    |||||||||| |||| ||| || ||||||||||||||| |||||| | ||||||| || || || || | ||||||||||||||||||||||    
T  38435381 cccccaaaaccatgatatcttcaaaagtgattgttgctacaccaagtggaaacacaaatgtattggtcttacaacaccatttctcaacaacc 38435472  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 9814906 - 9814814
Alignment:
Q  113 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacc 205  Q
    ||||||||||| || |||||||||||| | || || || ||||||||  ||||||| || || || || | ||||||||||||||||||||||    
T  9814906 ccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgtattcgtcttacaacaccatttctcaacaacc 9814814  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 205
Target Start/End: Original strand, 22652267 - 22652429
Alignment:
Q  43 cttctgttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtg 142  Q
    ||||| ||||||||||||||||| || |||||||||   |  ||||||||||  |||||  | || ||| ||| | ||||  || ||||| || || |||    
T  22652267 cttcttttccacctctctcatcttttcatcttcaagtgagatgaaaacaggatcaccaagaacagggtaaccctctaaaatcataacatcttctaaggtg 22652366  T
Q  143 attgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacc 205  Q
    || ||||| ||||||||| ||||||| || | |||||| ||||| ||||||||||||||||||    
T  22652367 atagttgcctcaccaaatggaaacacaaatgagtttgtctcacagcaccatttctcaacaacc 22652429  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 6397983 - 6398033
Alignment:
Q  109 gtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaa 159  Q
    |||| ||||||| ||||||| |||||||||||| |||||||| ||||||||    
T  6397983 gtagacccccaagacaatgatatcctccaaagttattgttgcctcaccaaa 6398033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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