View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10039_low_6 (Length: 485)
Name: NF10039_low_6
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Original strand, 13202082 - 13202545
Alignment:
| Q |
19 |
aatttatttttggccaagtannnnnnnctactctacta--ccaacaaaacaagtttaagcaa--gaggagaaaagcatcataaatgataactaaaaaa-t |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
13202082 |
aatttatttttggccaagtatttttttctactctactaaaccaacaaaacaagtttaagcaatagaggagaaaagcatcataaatgataactaaaaaaat |
13202181 |
T |
|
| Q |
114 |
tcaaaaggaaactcttacaagtccatcttaaatatgtataaggaacttttacaattcaaaagnnnnnnn--gatttagtaaaagcaaatatcaatagaca |
211 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
13202182 |
tcaaaaggaaattcttacaagtccatcttaaatatgtataaggaacttttacaattaaaaaaaaaaaaaaagatttagtaaaagcaaatatccatagaca |
13202281 |
T |
|
| Q |
212 |
gagtatccatttagaaaatccctttgagaagattcgcaacagtggagattgcagctccagtgatagcacattgaacaacatgttcatgtgtggagtcttc |
311 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13202282 |
gagtacccatttagaaaatccctttgagaagatttgcaacagttgagattgcagctccagtgatagcacattgaacaacatgttcatgtgtggagtcttc |
13202381 |
T |
|
| Q |
312 |
caatgtaagtgcaagggtagccccggtgattgctccagcaactgcactgtttttctgcatcaaacagaacaagtgatgatgttatttcttagatttagtt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13202382 |
caatgtaagtgcaagggtagccccggtgattgctccagcaactgcactgtttttctgcatcaaacagaacaagtgatgatgtta-ttcttagatttagtt |
13202480 |
T |
|
| Q |
412 |
ctaaatttcagtccccggttgtaattcgacagaaatataacagttttagatttagaggtctctgc |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13202481 |
ctaaatttcagtccccggttgtaattcgacagaaatataacagctttagatttagaggtctctgc |
13202545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 370
Target Start/End: Complemental strand, 50326253 - 50326220
Alignment:
| Q |
337 |
gtgattgctccagcaactgcactgtttttctgca |
370 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
50326253 |
gtgattgctccagcaactgcactatttttctgca |
50326220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University