View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10039_low_8 (Length: 453)
Name: NF10039_low_8
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 37498607 - 37498861
Alignment:
| Q |
1 |
attgacatatcaacatttaaaataatatgaaaa-aatgacacaatttagtataatcatatgtgttggtatcgcgtcggtgttagacattgacacatgttt |
99 |
Q |
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| T |
37498607 |
attgacacatcaacattgaaaataatatgaaaaaaatgacacaatttagtataatcatatgtgttggtgtcgcgtcggtgtcaaacatcgacacatgttt |
37498706 |
T |
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| Q |
100 |
gacaccaagatatggctaatccgtgtagtgtttgttctcatacgtgacatgtgacttttatcttcaaatatcaagacaaataataaaatattgtcttagg |
199 |
Q |
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| T |
37498707 |
gacacaaagacatggctaattcgagtagcgtttgtgctcatacgtgacatgtgacttttatcttcaaatatcaagacaaataataaaatattgtcttagg |
37498806 |
T |
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| Q |
200 |
ttggtggcacaattctaaaatattgtaaacccaaaactttttgtgataatgaata |
254 |
Q |
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| T |
37498807 |
ttggtggcacaattctaaaatattgtaaacccaaagctttttgtgataatgaata |
37498861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 37499057 - 37499138
Alignment:
| Q |
246 |
taatgaatatagtgtaatggatttgagttgagaaaatgtgtttgttgataaggactaggtgcaactagctttacttagaaga |
327 |
Q |
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| T |
37499057 |
taataaatataatctaatggatttgagttgagaaaatgtgtttgttgataaggactaggtgcaactagctttacttagaaga |
37499138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 163 - 404
Target Start/End: Original strand, 37497266 - 37497506
Alignment:
| Q |
163 |
tcaaatatcaagacaaataataaaatattgtcttaggttggtggcacaatt-ctaaaatatt-gtaaacccaaaactttttgtgataatgaatatagtgt |
260 |
Q |
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| T |
37497266 |
tcaaatatcaaaacaaacagaaaaatattct-ttaggttggtggcacaattgctaaaatatttgtaaaccctaagctctctgtgacaaggaatcaaatct |
37497364 |
T |
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| Q |
261 |
aatggatttgagttgagaaaatgtgtttgttgataaggactaggtgcaactagctttacttagaagacatatccgatgtaggtagtatatttaactagcc |
360 |
Q |
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| T |
37497365 |
aatggatttgagttaagaaaacat--ttgttgataaggactaggtggagttaactttacttggcagacatatatggtatagttagtagatgcaactagcc |
37497462 |
T |
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| Q |
361 |
ttagctaatagacatatctgatgtagttagcaattacatataga |
404 |
Q |
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| T |
37497463 |
ttagttaatagacatatctggtgtagttatcaattgcagataga |
37497506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 370 - 435
Target Start/End: Original strand, 37499139 - 37499204
Alignment:
| Q |
370 |
agacatatctgatgtagttagcaattacatatagatgaaaatagttgttataactatgttaactac |
435 |
Q |
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| T |
37499139 |
agacatatctgatgtagttagcaattacatatagacgaaagtagttgttataactatgttaactac |
37499204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 13427583 - 13427622
Alignment:
| Q |
19 |
aaaataatatgaaaaaatgacacaatttagtataatcata |
58 |
Q |
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| T |
13427583 |
aaaataatttgaaaaaatgacataatttagtataatcata |
13427622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 8160436 - 8160484
Alignment:
| Q |
32 |
aaaatgacacaatttagtataatcatatgtgttggtatcgcgtcggtgt |
80 |
Q |
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| T |
8160436 |
aaaattacataatttagtgtaattatatgtgttggtatcgtgtcggtgt |
8160484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 43368099 - 43368153
Alignment:
| Q |
32 |
aaaatgacacaatttagtataatcatatgtgttggtatcgcgtcggtgttagaca |
86 |
Q |
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| T |
43368099 |
aaaatgacacagtttaatatgatcatatgtgttggtgtcgtgtcggtgtcagaca |
43368153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 2648582 - 2648537
Alignment:
| Q |
30 |
aaaaaatgacacaatttagtataatcatatgtgttggtatcgcgtc |
75 |
Q |
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| T |
2648582 |
aaaaaatgacaaaatttaatgtaatcatatgtgttggtgtcgcgtc |
2648537 |
T |
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