View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10039_low_9 (Length: 453)
Name: NF10039_low_9
Description: NF10039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10039_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 27846214 - 27846644
Alignment:
| Q |
18 |
ttatctcccaagccatcgatccctaacaagatttatttactttttagcaagttcctattattaggatgatgataaaa-tatcatgttttaatgtgttatc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27846214 |
ttatctcccaagccatcgatccctaacaagatttatttactttttagtaagttcctattattatgatgatgataaaaatatcatgttttaatgtgttatc |
27846313 |
T |
|
| Q |
117 |
caactatgagtgcatattggtacaaaatcaactagatcttgaatttctaatacaaacatacatatatgatatgaaaaacaaaactgaaaagtaagtatga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27846314 |
caactatgagtgcatattggtacaaaatcaactagatcttgaatttctaatacaaacatacatatatgatatgaaaa-caaaactgaaaagtaagtatga |
27846412 |
T |
|
| Q |
217 |
tgtggatggtgtattgaaatgagatagtcccattatagtgttagtggtggtgtttggtgcaaaaaggaaagaaggggtccgggaagcaatcactatcaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27846413 |
tgtggatggtgtattgaaatgagatagtcccattatagtgttagtggtggtgtttggtgcaaaaaggaaagaaggggtccgggaagcaatcactatcaaa |
27846512 |
T |
|
| Q |
317 |
aactgttacttaatagtctcattctttcctttctggccggcgccgacagctttggttgaaggaatcaaaacgatacagatggccatgaccatgatatgct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27846513 |
aactgttacttaatagtctcattctttcctttctggccggcgccgacagctttggttgaaggaatcaaaacgatacagatggccatgaccatgatatgct |
27846612 |
T |
|
| Q |
417 |
gtgctgctcacccgacaacctcctttgcttct |
448 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |
|
|
| T |
27846613 |
gtgctgctcacccgacaacctcttttgcttct |
27846644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University