View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1003_high_1 (Length: 661)
Name: NF1003_high_1
Description: NF1003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1003_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Complemental strand, 53612932 - 53612313
Alignment:
| Q |
1 |
tctcaataccatgaatatatgaacaaggtattaggaatgaatactattgtaaaggaaggtaatcagctttccaagctaacacataagaaaacatcataag |
100 |
Q |
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| T |
53612932 |
tctcaataccatgaatatatgaacaaggtattaggaatgaatactattgtaaatgaaggtaatcagctttccaagctaacacataagaaaacatcataag |
53612833 |
T |
|
| Q |
101 |
ttgcaaatttgcaatactttatattcagggtagaagacttctattgctcaaaacattcatttagtgacaccaaactttataataatgctggagactagat |
200 |
Q |
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| T |
53612832 |
ttgcaaatttgcaatactttatattaagggtagaagacttctattgctcaaaacattcatttagtgacaccaaactttataataatgctggagactagat |
53612733 |
T |
|
| Q |
201 |
aaagaagttatgtatcgtgtggaagatcatacatcagaacagaaccatctgaattcaaccggtagattgaaaacagacaaataaaactatctgaagttgt |
300 |
Q |
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| T |
53612732 |
aaagaagttatgtatcgtgtggaagatcatacatcagaacagaaccatctgaattcaaccggtagattgaaaacagacaaataaaattatctgaagttgt |
53612633 |
T |
|
| Q |
301 |
ggctggccaagtgccaaaactaaatcctaaaggacttggactaagtttcctagagaaactttgttttctactctcagtaaaagccattatttataggtct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53612632 |
ggctggccaagtgccaaaactaaatcctaaaggacttggactaagtttcctagagaaactttgttttctactctcagtaaaagccattatttataggtct |
53612533 |
T |
|
| Q |
401 |
aaagacattgcatggctgcattactcttccatcacaacttcttcttctttttcttcaagacatatatttctctaaaaac----ttggtaattgcttcatc |
496 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
53612532 |
aaagacattgcatggctgcattactcttccatcacgacttcttcttctttttcttcaagacatatatttctctacaaacttaattggtaattgcttcatc |
53612433 |
T |
|
| Q |
497 |
atctttttcatgcatacatcgatcacatgcatgaatgcatactacttttgatgcttgaacataaatcccttataacacttgacttgtatttcatgaattg |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53612432 |
atctttttcatgcatacatcgatcacatgcatgaatgcatactacttttgatgcttgaacataaatcccttataacccttgacttgtatttcatgaattg |
53612333 |
T |
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| Q |
597 |
tttattcaatgagtaaaaag |
616 |
Q |
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| T |
53612332 |
tttattcaatgagtaaaaag |
53612313 |
T |
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