View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10040_low_11 (Length: 250)

Name: NF10040_low_11
Description: NF10040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10040_low_11
NF10040_low_11
[»] chr2 (13 HSPs)
chr2 (1-240)||(40145441-40145695)
chr2 (77-141)||(12140597-12140661)
chr2 (50-111)||(39621989-39622050)
chr2 (77-137)||(4350755-4350815)
chr2 (6-40)||(10563610-10563644)
chr2 (6-40)||(29300629-29300663)
chr2 (96-141)||(13866962-13867007)
chr2 (95-140)||(13869050-13869095)
chr2 (49-98)||(14299615-14299664)
chr2 (78-111)||(19978013-19978046)
chr2 (1-42)||(35755552-35755593)
chr2 (7-39)||(13189440-13189472)
chr2 (53-141)||(33192243-33192330)
[»] chr3 (10 HSPs)
chr3 (77-161)||(53735893-53735977)
chr3 (50-140)||(43115094-43115184)
chr3 (51-142)||(41724251-41724342)
chr3 (78-141)||(50211801-50211864)
chr3 (51-109)||(47132033-47132091)
chr3 (82-139)||(30573857-30573914)
chr3 (14-42)||(237389-237417)
chr3 (49-137)||(1810014-1810102)
chr3 (77-141)||(22667468-22667532)
chr3 (77-141)||(22724107-22724171)
[»] chr7 (6 HSPs)
chr7 (77-129)||(36537973-36538025)
chr7 (77-141)||(23214920-23214984)
chr7 (50-142)||(36598296-36598388)
chr7 (51-141)||(24967100-24967190)
chr7 (51-141)||(25670527-25670617)
chr7 (51-142)||(46281082-46281171)
[»] chr5 (4 HSPs)
chr5 (77-141)||(11095436-11095500)
chr5 (79-142)||(14599312-14599375)
chr5 (114-159)||(13605296-13605341)
chr5 (77-141)||(10125659-10125723)
[»] chr8 (7 HSPs)
chr8 (77-138)||(2487952-2488013)
chr8 (82-151)||(40280157-40280226)
chr8 (77-141)||(4560567-4560631)
chr8 (59-141)||(1561324-1561406)
chr8 (49-141)||(24326070-24326160)
chr8 (51-128)||(31884632-31884708)
chr8 (49-129)||(2091800-2091880)
[»] scaffold0110 (1 HSPs)
scaffold0110 (82-137)||(4168-4223)
[»] chr4 (6 HSPs)
chr4 (1-40)||(2996552-2996591)
chr4 (82-141)||(18628494-18628553)
chr4 (51-141)||(4691887-4691977)
chr4 (50-112)||(37575906-37575968)
chr4 (106-150)||(8469041-8469085)
chr4 (77-141)||(10365840-10365904)
[»] chr1 (5 HSPs)
chr1 (77-142)||(23373253-23373318)
chr1 (82-142)||(4033957-4034017)
chr1 (77-141)||(4363576-4363639)
chr1 (82-142)||(5157142-5157202)
chr1 (77-141)||(15581319-15581383)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40145441 - 40145695
Alignment:
Q  1 tcaagttgtttttatgtaagttataagttgttttcataagttttctggagaaataagcggaaaacaatttatggttatgttataagttgtttcgataagt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40145441 tcaagttgtttttatgtaagttataagttgttttcataagctttctggagaaataagcggaaaacaatttatggttatgttataagttgtttcgataagt 40145540  T
Q  101 tctctcaaacaagctcataagtgtttatgtcagtagataagtcaatccaaagagaccctaatttgaacatactaaggatttaaatatttgc--------- 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||             
T  40145541 tctctcaaacaagctcataagtgtttatgtcagtagataagtcaatccaaagagaccctaatttgaacatactaaggatataaatatttgctgaatttgt 40145640  T
Q  192 -----tgaatttattgtttaatgaagccttagcagcatat-actgttaacctttg 240  Q
         ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40145641 tccagtgaatttattgtttaatgaagccttagcagcatataactgttaacctttg 40145695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 12140597 - 12140661
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||| |||||||||||  |||||||||||||||| |  || ||||||||||||||||||||||||    
T  12140597 atgtcataagttgttttcataagttctctcaaactatttcgtaagtgtttatgtcagtagataag 12140661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 39621989 - 39622050
Alignment:
Q  50 gaaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaaca 111  Q
    ||||||||| ||||||||||||||  | ||| |||||||||||  |||||||||||||||||    
T  39621989 gaaataagctgaaaacaatttatgaatttgtcataagttgttttcataagttctctcaaaca 39622050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 4350755 - 4350815
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtaga 137  Q
    |||| ||||| |||||  |||||||||||||||||| ||| |||||| |||||||||||||    
T  4350755 atgtcataagctgttttcataagttctctcaaacaatctcttaagtgcttatgtcagtaga 4350815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 10563644 - 10563610
Alignment:
Q  6 ttgtttttatgtaagttataagttgttttcataag 40  Q
    |||||||| ||||||||||||||||||||||||||    
T  10563644 ttgtttttttgtaagttataagttgttttcataag 10563610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 29300629 - 29300663
Alignment:
Q  6 ttgtttttatgtaagttataagttgttttcataag 40  Q
    ||||||| |||||||||||||||||||||||||||    
T  29300629 ttgttttcatgtaagttataagttgttttcataag 29300663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 13866962 - 13867007
Alignment:
Q  96 taagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    ||||||||||||||||  |||| ||||||||||| |||||||||||    
T  13866962 taagttctctcaaacagtctcacaagtgtttatggcagtagataag 13867007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 13869095 - 13869050
Alignment:
Q  95 ataagttctctcaaacaagctcataagtgtttatgtcagtagataa 140  Q
    ||||||||||||||| |  |||||||||| ||||||||||||||||    
T  13869095 ataagttctctcaaatagtctcataagtgcttatgtcagtagataa 13869050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 14299664 - 14299615
Alignment:
Q  49 agaaataagcggaaaacaatttatggttatgttataagttgtttcgataa 98  Q
    |||||||||| ||||||||| ||||| ||||| |||||||||||| ||||    
T  14299664 agaaataagctgaaaacaatgtatggatatgtcataagttgtttccataa 14299615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 19978013 - 19978046
Alignment:
Q  78 tgttataagttgtttcgataagttctctcaaaca 111  Q
    |||||||||||||||| |||||||||||||||||    
T  19978013 tgttataagttgtttctataagttctctcaaaca 19978046  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35755593 - 35755552
Alignment:
Q  1 tcaagttgtttttatgtaagttataagttgttttcataagtt 42  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  35755593 tcaaattgttttcatgtaagctataagttgttttcataagtt 35755552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 13189472 - 13189440
Alignment:
Q  7 tgtttttatgtaagttataagttgttttcataa 39  Q
    |||||| ||||||||||||||||||||||||||    
T  13189472 tgttttcatgtaagttataagttgttttcataa 13189440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 33192243 - 33192330
Alignment:
Q  53 ataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||||| |||||||  |||||| ||||| ||||  |||||  ||||||||| |||||||  ||||| |||||||||||||| |||||||    
T  33192243 ataagctgaaaacagcttatggatatgtcataaactgttttcataagttct-tcaaacagtctcatgagtgtttatgtcagcagataag 33192330  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 53735977 - 53735893
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataagtcaatccaaagagaccctaa 161  Q
    |||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||| |||||||||    
T  53735977 atgtcataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagtaaataagttaatccaaacagaccctaa 53735893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 43115094 - 43115184
Alignment:
Q  50 gaaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataa 140  Q
    ||||||||| |||||||| ||||||  |||| |||||||||||| ||||  |||  ||||||| |||| ||||| |||||||| |||||||    
T  43115094 gaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgtcaatagataa 43115184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 41724251 - 41724342
Alignment:
Q  51 aaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataagt 142  Q
    |||||||| |||||||| ||||||  |||| |||||||||||| ||||||| || |||||   || | ||||  ||||||||||||||||||    
T  41724251 aaataagctgaaaacaacttatggacatgtcataagttgtttccataagttttcacaaactgtctgacaagtacttatgtcagtagataagt 41724342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 50211801 - 50211864
Alignment:
Q  78 tgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||||||||||||||  |||||||||||||||||  || | ||||| |||||| ||||||||||    
T  50211801 tgttataagttgttttcataagttctctcaaacagtcttacaagtgcttatgttagtagataag 50211864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 47132033 - 47132091
Alignment:
Q  51 aaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaa 109  Q
    |||||||| ||||||| ||||||| ||||  |||||||||||  |||||||||||||||    
T  47132033 aaataagctgaaaacagtttatggatatgacataagttgttttcataagttctctcaaa 47132091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 30573914 - 30573857
Alignment:
Q  82 ataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagata 139  Q
    |||| ||||||  |||||||||| ||||||| |||| ||||| |||||||||||||||    
T  30573914 ataatttgttttcataagttctcacaaacaaactcacaagtgcttatgtcagtagata 30573857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 237389 - 237417
Alignment:
Q  14 atgtaagttataagttgttttcataagtt 42  Q
    |||||||||||||||||||||||||||||    
T  237389 atgtaagttataagttgttttcataagtt 237417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 1810014 - 1810102
Alignment:
Q  49 agaaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtaga 137  Q
    |||||||||| |||||||| | ||||  |||| ||||||||||||  |||| ||||||||| |  |||| ||||| |||||| ||||||    
T  1810014 agaaataagcagaaaacaactcatggacatgtcataagttgtttccgtaagctctctcaaatagtctcacaagtgattatgttagtaga 1810102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 22667468 - 22667532
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||||||| | |||||| ||||  |||||||||||  |||| ||||| |||||||||||||||||    
T  22667468 atgttatatgctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataag 22667532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 22724107 - 22724171
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||||||| | |||||| ||||  |||||||||||  |||| ||||| |||||||||||||||||    
T  22724107 atgttatatgctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataag 22724171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 36537973 - 36538025
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatg 129  Q
    |||| |||||||||||| |||||||||||||||||| |||| |||||||||||    
T  36537973 atgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 23214920 - 23214984
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||| |||||||||||  |||| ||||||||||||  ||||||||||||||||  ||||||||||    
T  23214920 atgtcataagttgttttcataaattctctcaaacagtctcataagtgtttatgctagtagataag 23214984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 36598388 - 36598296
Alignment:
Q  50 gaaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataagt 142  Q
    ||||||||| |||||||  |||||   |||| ||||| |||||| ||||| |||||||||||| |||| || || |||||||||||| |||||    
T  36598388 gaaataagctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctcacaattgcttatgtcagtagttaagt 36598296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 24967100 - 24967190
Alignment:
Q  51 aaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||||||| |||||||| || ||| |||||||||||||||||| ||||  |||  ||||||  ||||||| |||||||   ||||||||||    
T  24967100 aaataagctgaaaacaacttctggatatgttataagttgtttccataatctcttccaaacagtctcataaatgtttatactagtagataag 24967190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 25670617 - 25670527
Alignment:
Q  51 aaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||||||| |||||||||||||    |||| |||||||||||  ||||||| |||||||||  |||| ||| | |||||||| ||||||||    
T  25670617 aaataagctgaaaacaatttattaacatgtcataagttgttttcataagttttctcaaacagtctcacaagagcttatgtcaatagataag 25670527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 46281171 - 46281082
Alignment:
Q  51 aaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataagt 142  Q
    |||||||| ||||||||||||| |  |||  ||||||||||||  |||  ||| |||||||  |||| |||||||||||| |||||||||||    
T  46281171 aaataagctgaaaacaatttatagacatggcataagttgtttccgtaaactctttcaaaca--ctcaaaagtgtttatgttagtagataagt 46281082  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 11095500 - 11095436
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||| ||||| |||||| | ||||||||||||||||  ||| |||||||||||||||||||||||    
T  11095500 atgtcataagctgtttccacaagttctctcaaacaatatcacaagtgtttatgtcagtagataag 11095436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 14599375 - 14599312
Alignment:
Q  79 gttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataagt 142  Q
    ||||||||||||||||||||| |||||||||||| || | |||||||||||  |||| ||||||    
T  14599375 gttataagttgtttcgataagctctctcaaacaatcttacaagtgtttatgctagtaaataagt 14599312  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 13605341 - 13605296
Alignment:
Q  114 ctcataagtgtttatgtcagtagataagtcaatccaaagagaccct 159  Q
    |||| ||||| |||||||| |||||||||||||||||| |||||||    
T  13605341 ctcacaagtggttatgtcactagataagtcaatccaaacagaccct 13605296  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 10125723 - 10125659
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||| |||||||||||  ||||||||||||| ||||  ||| ||||| | |||||||||||||||    
T  10125723 atgtcataagttgtttacataagttctctcagacaatgtcacaagtgctcatgtcagtagataag 10125659  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 2488013 - 2487952
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagat 138  Q
    ||||||||||||||||  |||||||||| ||||||  |||| ||||| ||||||||||||||    
T  2488013 atgttataagttgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagat 2487952  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 40280226 - 40280157
Alignment:
Q  82 ataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataagtcaatccaaa 151  Q
    |||||||||||| ||||  |||||||||||| ||||||||||  |||| | |||||||| ||||||||||    
T  40280226 ataagttgtttccataaactctctcaaacaatctcataagtgcatatgcctgtagataactcaatccaaa 40280157  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 4560567 - 4560631
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||||||||||| |||| |||||||||  ||||||| |||| ||||| |||||||| ||||||||    
T  4560567 atgttataagttatttccataagttcttccaaacaacctcacaagtgcttatgtcaatagataag 4560631  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 1561324 - 1561406
Alignment:
Q  59 ggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    ||||||||| |||||| ||| | |||||||||||   | || |||||||||||| |||| ||||||||||| || ||||||||    
T  1561324 ggaaaacaacttatggatatatcataagttgtttttgtgagctctctcaaacaatctcacaagtgtttatgccattagataag 1561406  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 24326070 - 24326160
Alignment:
Q  49 agaaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    ||||||||||||||||||| |||||  ||| | ||||  |||||| ||||| |||| ||||||  |||| ||||| ||||| |||||||||||    
T  24326070 agaaataagcggaaaacaacttatg--tatatcataaactgtttccataagctctcccaaacagtctcacaagtgcttatgccagtagataag 24326160  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 31884632 - 31884708
Alignment:
Q  51 aaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttat 128  Q
    |||||||| ||||||| || ||| | ||||||||||||||||||||||| | |||||| | | |||||||||| ||||    
T  31884632 aaataagctgaaaacagtt-atgatcatgttataagttgtttcgataagatatctcaacctatctcataagtgcttat 31884708  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 2091800 - 2091880
Alignment:
Q  49 agaaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatg 129  Q
    |||||||||  |||||||| |||||| ||| | |||||||||||   | || |||||||||||| |||| |||||||||||    
T  2091800 agaaataagttgaaaacaacttatggatatatcataagttgtttttgtgagctctctcaaacaatctcacaagtgtttatg 2091880  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 4223 - 4168
Alignment:
Q  82 ataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtaga 137  Q
    |||||||||||| ||||  |||| |||||||||||| ||||| |||||||||||||    
T  4223 ataagttgtttccataaactctcacaaacaagctcacaagtgcttatgtcagtaga 4168  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2996552 - 2996591
Alignment:
Q  1 tcaagttgtttttatgtaagttataagttgttttcataag 40  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  2996552 tcaaattgtttttatataagttataagttgttttcataag 2996591  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 18628553 - 18628494
Alignment:
Q  82 ataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||||||||||  ||||| |||| ||||||  |||| |||||||||||||||||||||||    
T  18628553 ataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataag 18628494  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 4691887 - 4691977
Alignment:
Q  51 aaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||||||| ||||||||  |||||  |||| |||||||||||| ||||||| ||||||| |  |||| ||||| || || |||||||||||    
T  4691887 aaataagctgaaaacaacatatgggcatgtcataagttgtttccataagttttctcaaatagtctcacaagtgattgtgacagtagataag 4691977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 37575968 - 37575906
Alignment:
Q  50 gaaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaacaa 112  Q
    ||||| ||| |||||||| |||||  ||||||||||||| |||  ||||||||||||||||||    
T  37575968 gaaatgagctgaaaacaacttatgagtatgttataagttattttcataagttctctcaaacaa 37575906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 8469041 - 8469085
Alignment:
Q  106 caaacaagctcataagtgtttatgtcagtagataagtcaatccaa 150  Q
    ||||||| ||||| ||||||||| || ||||||||||||||||||    
T  8469041 caaacaatctcattagtgtttatctccgtagataagtcaatccaa 8469085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 10365840 - 10365904
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    ||||||||| ||||||||||||| | ||||||| |  |||   ||||||||||||||||||||||    
T  10365840 atgttataatttgtttcgataagctgtctcaaatagtctctccagtgtttatgtcagtagataag 10365904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 23373318 - 23373253
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataagt 142  Q
    |||| |||||||||||| ||||| |||| ||||||| |||| ||||| |||| |||||||| ||||    
T  23373318 atgtcataagttgtttctataagctctcccaaacaatctcacaagtgcttatatcagtagacaagt 23373253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 4034017 - 4033957
Alignment:
Q  82 ataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataagt 142  Q
    ||||||| |||  ||||| |||||||||||| |||| ||||||||||| ||||||| ||||    
T  4034017 ataagttattttcataagctctctcaaacaatctcacaagtgtttatgccagtagacaagt 4033957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 4363639 - 4363576
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||| ||||||||||||||||||  ||||||||||| |||| ||||  |||||| ||||||||||    
T  4363639 atgtcataagttgtttcgataagcgctctcaaacaatctcacaagt-attatgtaagtagataag 4363576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 5157142 - 5157202
Alignment:
Q  82 ataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataagt 142  Q
    |||||||||||| ||||| |||| ||||||   ||| ||||||||||||| ||||||||||    
T  5157142 ataagttgtttctataagctctcccaaacagtttcacaagtgtttatgtccgtagataagt 5157202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 15581319 - 15581383
Alignment:
Q  77 atgttataagttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataag 141  Q
    |||| |||||||||||| || || |||  ||||||| |||| ||||| |||||||||||||||||    
T  15581319 atgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtagataag 15581383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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