View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10040_low_18 (Length: 218)
Name: NF10040_low_18
Description: NF10040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10040_low_18 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 30187510 - 30187293
Alignment:
| Q |
1 |
tatataagaaaagctagaatattgaataaacccaataagtaattcatagcaaatgagcaattcacagctatcttttagagttagttatttattgattgaa |
100 |
Q |
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| T |
30187510 |
tatataagaaaagctagaatattgaataaacccaataagtaattcatagcaaatgagcaattcacagctatcttttagagttagttatttattgattgaa |
30187411 |
T |
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| Q |
101 |
ttctttgtttcatttcaactgacagctagcaaaggcgtggccatggatggtattatttcaattgctgctaaaattgctgagtatatggttgtacctattg |
200 |
Q |
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| T |
30187410 |
ttctttgtttcatttcaactgacagctagcaaaggcgtggccatggatggtattatttcagttgctgctaaaattgctgagtatatggttgtacctattg |
30187311 |
T |
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| Q |
201 |
gtcgtcaatttggttaca |
218 |
Q |
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|||||||||||||||||| |
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| T |
30187310 |
gtcgtcaatttggttaca |
30187293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 30168513 - 30168668
Alignment:
| Q |
62 |
tcacagctatcttttagagttagttatttattgattgaattctttgtttcatttcaactgacagctagcaaaggcgtggccatggatggtattatttcaa |
161 |
Q |
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|||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || |||||| |
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| T |
30168513 |
tcacggctatctttca-agttagttatttattgattgaattctttgtttcatttcaactaccagctagcaaaggggtggccatggatgctactatttctg |
30168611 |
T |
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| Q |
162 |
ttgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttaca |
218 |
Q |
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| T |
30168612 |
ttgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttaca |
30168668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 30009026 - 30009184
Alignment:
| Q |
59 |
aattcacagctatcttttagagttagttatttattgattgaattctttgtttcatttcaactgacagctagcaaaggcgtggccatggatggtattattt |
158 |
Q |
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||||||||||||||||| | |||| |||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
30009026 |
aattcacagctatctttca-agtttgttatttattgattgaatcccatgtttcatttcaactgacagatagcaaaggggtggccatggatgttattattt |
30009124 |
T |
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| Q |
159 |
caattgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttaca |
218 |
Q |
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| T |
30009125 |
caattgctgctaaaattgctgaaattatggttgcacctattggacgtcaatttcgttaca |
30009184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 30065523 - 30065681
Alignment:
| Q |
59 |
aattcacagctatcttttagagttagttatttattgattgaattctttgtttcatttcaactgacagctagcaaaggcgtggccatggatggtattattt |
158 |
Q |
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||||||||||||||||| | |||| |||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
30065523 |
aattcacagctatctttca-agtttgttatttattgattgaatcccatgtttcatttcaactgacagatagcaaaggggtggccatggatgttattattt |
30065621 |
T |
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| Q |
159 |
caattgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttaca |
218 |
Q |
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| T |
30065622 |
caattgctgctaaatttgctgaaattatggttgcacctattggacgtcaatttcgttaca |
30065681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 30221075 - 30221208
Alignment:
| Q |
84 |
gttatttattgattgaattctttgtttcatttcaactgacagctagcaaaggcgtggccatggatggtattatttcaattgctgctaaaattgctgagta |
183 |
Q |
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|||||||||| ||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||| ||| ||||||| |
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| T |
30221075 |
gttatttatttatttaattccttgtttc-tttcaactgacagctagcaaagtggtggccatggatgttattatttcagttgctgctaagatttctgagta |
30221173 |
T |
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| Q |
184 |
tatggttgtacctattggtcgtcaatttggttaca |
218 |
Q |
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| T |
30221174 |
tacggttgtacctattggttgtcaatttggttaca |
30221208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 30249258 - 30249393
Alignment:
| Q |
85 |
ttatttattgattgaattctttgtttcatttc--aactgacagctagcaaaggcgtggccatggatggtattatttcaattgctgctaaaattgctgagt |
182 |
Q |
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||||| |||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||| ||||||| || ||||||||| | ||| ||||| |
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| T |
30249258 |
ttattcattgattgaatttcttgttttgtttctcaactgacagctagcaaaggagtggccatggatgttattattccagttgctgctacatttgttgagt |
30249357 |
T |
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| Q |
183 |
atatggttgtacctattggtcgtcaatttggttaca |
218 |
Q |
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||||| ||||||||||||| |||||||||||||||| |
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| T |
30249358 |
atatgtttgtacctattggacgtcaatttggttaca |
30249393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 30787656 - 30787743
Alignment:
| Q |
131 |
aaaggcgtggccatggatggtattatttcaattgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttaca |
218 |
Q |
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||||| ||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
30787656 |
aaaggagtggccatggatgttattttttcagttgctgctaaaattgctgagtatatgtttgtacctattggacgtcaatttggttaca |
30787743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 30276889 - 30276993
Alignment:
| Q |
113 |
tttcaactgacagctagcaaaggcgtggccatggatggtattatttcaattgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttg |
212 |
Q |
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|||||| |||||||||||||||| ||| |||||||| ||| ||||||||||| ||||||||| |||| | || ||||| ||||||||| | ||||||| |
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| T |
30276889 |
tttcaaatgacagctagcaaaggggtg-ccatggattctatcatttcaattgcagctaaaatttctgaatttacggttgcacctattggacaacaatttg |
30276987 |
T |
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| Q |
213 |
gttaca |
218 |
Q |
| |
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|||||| |
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| T |
30276988 |
gttaca |
30276993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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