View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10040_low_2 (Length: 504)
Name: NF10040_low_2
Description: NF10040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10040_low_2 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 142 - 465
Target Start/End: Complemental strand, 4464075 - 4463765
Alignment:
| Q |
142 |
agtagcacccacaacaatctcaaagactacaagtttccaaccacgtagtaagtaatagataaatttactagtttatcctaatcaagggaagttggtattg |
241 |
Q |
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| T |
4464075 |
agtagcacccacaacaatctcaaagactacaagtttccaaccacgtagtaagtaatagataaattgactagtttatcctaatcaagg-aagttggtattg |
4463977 |
T |
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| Q |
242 |
ctttgctgcacatactgaaatttgggaactataagcaagtgactggaaagtctatagttaaaggtaaaagaagagaacagtactaaatgactttcgctgt |
341 |
Q |
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| T |
4463976 |
ctttgctgcacatactgaaatttgggaactataagca-------------tctatagttaaaggtaa--gaagagaacagtactaaatgactttcgctgt |
4463892 |
T |
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| Q |
342 |
tctacgatattaggtcagctagctagctgcattagctatatataagaag---aacatgtctttgtgtaccatgttactcatttaatttaccaaaatacat |
438 |
Q |
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| T |
4463891 |
tctacgatattaggtcagctagctagctgcattagctatatataagaagaacaacatgtctttgtgtgccatgttactcatttaatttaccaaaatacat |
4463792 |
T |
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| Q |
439 |
agttgccatcaaacttttgaatctaat |
465 |
Q |
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| T |
4463791 |
agttgccatcaaacttttgaatctaat |
4463765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 4467247 - 4467145
Alignment:
| Q |
44 |
tcaaacatacttgtacgttctccacttaaacaattatatgataatattgtgcaacatactcctgtttgcacctcaaaatcttatgcatatataatcttag |
143 |
Q |
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| T |
4467247 |
tcaaacatacttgtacgctctccacttaaacaattatatgataatattgtgcaacatactcctgtttgcacctcaaaatcttatgc----ataatcttag |
4467152 |
T |
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| Q |
144 |
tagcacc |
150 |
Q |
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| T |
4467151 |
tagcacc |
4467145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 4443006 - 4442919
Alignment:
| Q |
97 |
acatactcctgtttgcacctcaaaatcttatgcatatataatcttagtagcacccacaacaatctcaaagactacaagtttccaaccacg |
186 |
Q |
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| T |
4443006 |
acatactccaatttgcacctcaaaatcttcggcacacaaa--cttagtagcaaccacaacaatctcaaagaccaaaagattccaaccacg |
4442919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 306
Target Start/End: Complemental strand, 25878 - 25673
Alignment:
| Q |
95 |
caacatactcctgtttgcacctcaaaatcttatgcatatataatcttagtagcacccacaacaatctcaaagactacaagtttccaaccacgtagtaagt |
194 |
Q |
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| T |
25878 |
caacatactccaatttgcaccttaaaatattaggcatgcaaa--cttagtagcaaccacaacaatctcaaagaccaaaagattccaaccac---atatgc |
25784 |
T |
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| Q |
195 |
aatagataaatttactagtttatcctaatcaagggaagttggtattgctttgctgcacatactgaaatttgggaactataagcaagtgactggaaagtct |
294 |
Q |
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| T |
25783 |
tatagatgaattgactaatttattttaatcaa-cgaagttgatatggcttagcttcatatactgagatgtgggcactataagcaagttattgaaaagttt |
25685 |
T |
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| Q |
295 |
atagttaaaggt |
306 |
Q |
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||| || ||||| |
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| T |
25684 |
atactttaaggt |
25673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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