View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10040_low_3 (Length: 362)
Name: NF10040_low_3
Description: NF10040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10040_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 35447446 - 35447776
Alignment:
| Q |
15 |
ggacatcagaaaaaaggttattacgatgcattcaaggatcaacttgacccggaagatttccaagcaaatgtgcagaggctagaacttgcaggagtatggg |
114 |
Q |
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| T |
35447446 |
ggacatcagaaaaaaggttattacgatgcattcaaggatcaacttgacccggaagatttccaagcaaatgtgcagaggctagaacttgcaggagtatggg |
35447545 |
T |
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| Q |
115 |
atgagataatcgaaaagctgttaaactatgaacttccagaagaattagaagggaacgaaaattggaagaatataggaacgaagtttagaagactagttga |
214 |
Q |
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| T |
35447546 |
atgagataatcgaaaagctgttaaactatgaacttccagaagaattagaagggaacgaagattggaagaatataggaacgaagtttagaagactagttga |
35447645 |
T |
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| Q |
215 |
gcctttggatattgctaattactatagacattcaaggaaccgtgatggacgtgtttatatggctaaaggtggaaggccaaaaaggtataggtatacacaa |
314 |
Q |
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| T |
35447646 |
gcctttggatattgctaattactatagacattcaaggaaccgtgatggacgtgtttatatggctaaaggtggaaggccaaaaaggtataggtatacacaa |
35447745 |
T |
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| Q |
315 |
agatggttggaacattttgagaagagggatg |
345 |
Q |
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| T |
35447746 |
agatggttggaacattttgagaagagggatg |
35447776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 36882265 - 36881940
Alignment:
| Q |
20 |
tcagaaaaaaggttattacgatgcattcaaggatcaacttgacccggaagatttccaagcaaatgtgcagaggctagaa-cttgcaggagtatgggatga |
118 |
Q |
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| T |
36882265 |
tcagaaaaaaggttaccacgatgcattcaaggatcaactagaaagtgaagatttccaagcaaatgtgaagaggctagaaacttgcaggagcatgggatga |
36882166 |
T |
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| Q |
119 |
gataatcgaaaagctgttaaactatgaacttccagaagaattagaagggaacgaaaattggaagaatataggaacgaagtttagaagactagttgagcct |
218 |
Q |
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| T |
36882165 |
gataatcgaaaagctattaaactatgaactaccagaagaatttgaagggaagaaagaatgggtcgagataggaacaaagtttagaagactagttgagcct |
36882066 |
T |
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| Q |
219 |
ttggatattgctaattactatagacattcaa--ggaaccgtgatggacgtgtttatatggctaaaggtggaaggccaaaaaggtataggtatacacaaag |
316 |
Q |
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| T |
36882065 |
ttagatattgctaattactatagacattcaattggaaccgtgatggacgtgtttatttggctaaaggaggaaaaccaaaaaggtataggtatacacaaag |
36881966 |
T |
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| Q |
317 |
atggttggaacattttgagaagaggg |
342 |
Q |
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| T |
36881965 |
atggttggaacatgctgagaagaggg |
36881940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 35680864 - 35680799
Alignment:
| Q |
69 |
gatttccaagcaaatgtgcagaggctagaacttgcaggagtatgggatgagataatcgaaaagctg |
134 |
Q |
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| T |
35680864 |
gatttccaagcaaacgtgaagagacttgtgcttgcaggagtatgggatgagatcattgaaatgctg |
35680799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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