View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10040_low_5 (Length: 340)

Name: NF10040_low_5
Description: NF10040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10040_low_5
NF10040_low_5
[»] chr4 (19 HSPs)
chr4 (1-323)||(2621023-2621345)
chr4 (111-268)||(2367648-2367805)
chr4 (141-276)||(2486229-2486364)
chr4 (158-253)||(5106333-5106428)
chr4 (158-276)||(5102106-5102224)
chr4 (143-264)||(2547466-2547587)
chr4 (131-252)||(12124770-12124891)
chr4 (155-255)||(2472035-2472135)
chr4 (141-264)||(2491062-2491185)
chr4 (158-276)||(2519155-2519273)
chr4 (215-276)||(2382562-2382623)
chr4 (141-276)||(2525679-2525814)
chr4 (111-252)||(2373212-2373352)
chr4 (170-270)||(2391036-2391136)
chr4 (141-260)||(2467468-2467587)
chr4 (141-276)||(5035544-5035679)
chr4 (144-186)||(1517029-1517071)
chr4 (162-276)||(2477490-2477604)
chr4 (138-226)||(12126852-12126940)
[»] chr7 (1 HSPs)
chr7 (158-255)||(2576415-2576512)
[»] chr1 (1 HSPs)
chr1 (155-255)||(15837979-15838079)
[»] chr5 (1 HSPs)
chr5 (130-186)||(12846948-12847004)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 2621023 - 2621345
Alignment:
Q  1 tgtggcatcatcattatcataatcattgacattcaatattccaaaaacaatggcggaaacatgttcattcttaccagaggagtggtgggagtgtatcttc 100  Q
    ||||||||||||||| ||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621023 tgtggcatcatcattgtcatagttattgacatccaatattccacaaacaatggcggaaacatgttcattcttaccagaggagtggtgggagtgtatcttc 2621122  T
Q  101 aagttagttgacgacggcgacaacaaccattacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatca 200  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2621123 aagttagttgacgatggcgacaacaaccattactgggaacctctctccctcgtatccaaacagtttttgtccatcaccaaccgtctacggttctccatca 2621222  T
Q  201 caatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaacatcacgggcttctctacagaaagtgacct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621223 caatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaacatcacgggcttctctacagaaagtgacct 2621322  T
Q  301 cgacgagcttcttactaatatat 323  Q
    |||||||||||||||||||||||    
T  2621323 cgacgagcttcttactaatatat 2621345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 2367648 - 2367805
Alignment:
Q  111 acgacggcgacaacaaccattacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccga 210  Q
    ||||| ||||||||||||  |||||||||||||| ||| |||| |||||||| ||| | ||||||||||||||||| || ||||||||  |||| |||||    
T  2367648 acgacagcgacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctccatagcaatgtccga 2367747  T
Q  211 taaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctc 268  Q
    |||||| ||||||||| ||  |||||| ||| | |||||||| ||  |||||||||||    
T  2367748 taaaacaatccctttcctttatcgccttttccaaaggttccccaacctcacatccctc 2367805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 141 - 276
Target Start/End: Complemental strand, 2486364 - 2486229
Alignment:
Q  141 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 240  Q
    ||||||||||||| || ||||||||| ||||||||||||||||||| || |||||  ||||||||||||| ||||| ||||||||| ||| ||| |||||    
T  2486364 ctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttcatcgtctctt 2486265  T
Q  241 cgacaggttccctaatatcacatccctcaacatcac 276  Q
      |  ||||||||||| | ||||||| ||| |||||    
T  2486264 ttatgggttccctaatgttacatcccacaatatcac 2486229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 5106333 - 5106428
Alignment:
Q  158 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccct 253  Q
    ||||||||||||||||||||||||||||  || |||||  |||||||| |  || |||||||||||||||||| |||||||||| | |||||||||    
T  5106333 aaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatcactaatcaaaccatccctttcattcatcgcctcttcaaaaggttccct 5106428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 5102106 - 5102224
Alignment:
Q  158 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaata 257  Q
    |||||||||||||| ||||| ||  |||| || |||||  |||||||| | |||  |||||||||||||||||||| ||| ||||| |||||||||||      
T  5102106 aaacagtttttgtctatcactaatagtcttcgattctcggtcacaatcactgatcgaaccatccctttcattcctctccttttcgaaaggttccctaacg 5102205  T
Q  258 tcacatccctcaacatcac 276  Q
    ||||||| |||||||||||    
T  5102206 tcacatcactcaacatcac 5102224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 2547587 - 2547466
Alignment:
Q  143 ctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcg 242  Q
    |||||| |||| |||||||||||| ||||||||||||||||||| ||||||||  |||||||||||  | | | ||||| || | |||||| | |||||     
T  2547587 ctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctccagtcatatcatcctttcccttcctcacttcttcc 2547488  T
Q  243 acaggttccctaatatcacatc 264  Q
    | ||||||||||| ||||||||    
T  2547487 aaaggttccctaacatcacatc 2547466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 12124891 - 12124770
Alignment:
Q  131 tacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattc 230  Q
    |||||||||||||||||| | || |||||||| ||| | ||||||||||||||||| |  || |||||| ||||||| ||| |||| ||||||||| ||     
T  12124891 tacttggaacctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattttccatcgcaatctctgatgaaacaatccctttccttg 12124792  T
Q  231 ctcgcctcttcgacaggttccc 252  Q
      ||||||||| | ||||||||    
T  12124791 accgcctcttccaaaggttccc 12124770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 2472135 - 2472035
Alignment:
Q  155 tccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttcccta 254  Q
    |||||||||||||| ||||||||||| |||||  | |||||| ||||||||| |  | |||| ||||||||| ||| || ||||||||| ||||||||||    
T  2472135 tccaaacagtttttctccatcaccaatcgtctctgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaaggttcccta 2472036  T
Q  255 a 255  Q
    |    
T  2472035 a 2472035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 2491185 - 2491062
Alignment:
Q  141 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 240  Q
    ||||||| ||||| || ||||||||| |||||||||| |||||||| || || ||  ||||||||||||||  ||| ||||||||| ||  ||| |||||    
T  2491185 ctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttccttaatcgtctctt 2491086  T
Q  241 cgacaggttccctaatatcacatc 264  Q
     || ||||||||||| || |||||    
T  2491085 tgaaaggttccctaacattacatc 2491062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 276
Target Start/End: Complemental strand, 2519273 - 2519155
Alignment:
Q  158 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaata 257  Q
    ||||||||| ||||||||||||||||| | || | |||  |||||||||| ||| |||| ||||||||| ||| ||| ||||| || |||||||| ||      
T  2519273 aaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccccaacg 2519174  T
Q  258 tcacatccctcaacatcac 276  Q
    | ||||| |||||||||||    
T  2519173 ttacatcactcaacatcac 2519155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 2382562 - 2382623
Alignment:
Q  215 accatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaacatcac 276  Q
    |||||||||||||||||||||||||||   ||| |||||||| ||||||||||||| |||||    
T  2382562 accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcac 2382623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 276
Target Start/End: Complemental strand, 2525814 - 2525679
Alignment:
Q  141 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 240  Q
    ||||||||||||| || ||||||||| |||||||||||||| |||| || ||||   ||||||||||| ||  ||| ||||||||  ||  ||| |||||    
T  2525814 ctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctccaatgcaactatcccttttcttaatcgtctctt 2525715  T
Q  241 cgacaggttccctaatatcacatccctcaacatcac 276  Q
     || ||||||||||| ||  |||| ||||| |||||    
T  2525714 tgaaaggttccctaacattgcatcactcaatatcac 2525679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 2373212 - 2373352
Alignment:
Q  111 acgacggcgacaacaaccattacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccga 210  Q
    |||||||| |||||| ||  ||||| |||||||||||| | || |||||||| ||| | ||||||||||| | ||| || ||||||||  |||| | |||    
T  2373212 acgacggcaacaacagccgctacttcgaacctctctccgttgtttccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgt-cga 2373310  T
Q  211 taaaaccatccctttcattcctcgcctcttcgacaggttccc 252  Q
    |||||| || |||||| ||  |||||||||| | ||||||||    
T  2373311 taaaacaattcctttccttaatcgcctcttccaaaggttccc 2373352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 2391036 - 2391136
Alignment:
Q  170 tccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctca 269  Q
    ||||||||||||  ||| || |||||||||| |||| || |  |||||||||||||||||||||   ||||| |  ||||| ||||| ||||||||||||    
T  2391036 tccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctca 2391135  T
Q  270 a 270  Q
    |    
T  2391136 a 2391136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 2467587 - 2467468
Alignment:
Q  141 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 240  Q
    |||||||| |||| || ||||||||||||||||| |||||| |||| || |||||| || | || |||||   ||| ||||||||  ||| ||| |||||    
T  2467587 ctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttcatcgtctctt 2467488  T
Q  241 cgacaggttccctaatatca 260  Q
     || |||||||| |||||||    
T  2467487 tgaaaggttccccaatatca 2467468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 276
Target Start/End: Complemental strand, 5035679 - 5035544
Alignment:
Q  141 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 240  Q
    |||| ||| |||| || ||||||||| | ||||||||||||||||| || ||||   ||| |||||| ||   ||| ||||||||| ||  ||| |||||    
T  5035679 ctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttccttagtcgtctctt 5035580  T
Q  241 cgacaggttccctaatatcacatccctcaacatcac 276  Q
     || |||||||||||||| ||||| ||||| |||||    
T  5035579 tgaaaggttccctaatattacatcactcaatatcac 5035544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 1517029 - 1517071
Alignment:
Q  144 tctccctcgtgtccaaacagtttttgtccatcaccaaccgtct 186  Q
    |||||||||| |||||||| || ||||||||||||||||||||    
T  1517029 tctccctcgtttccaaacaattcttgtccatcaccaaccgtct 1517071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 276
Target Start/End: Complemental strand, 2477604 - 2477490
Alignment:
Q  162 agtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcac 261  Q
    ||||| ||||||| |||||| |||| || |||||  | ||||| |||||| |||||||||||| | ||| ||  |||||  | |||||||||||  ||||    
T  2477604 agtttctgtccataaccaacagtcttcgattctctgtgacaatttccgatcaaaccatcccttcccttcatcctctctttcaaaggttccctaacgtcac 2477505  T
Q  262 atccctcaacatcac 276  Q
    |||||| ||||||||    
T  2477504 atccctaaacatcac 2477490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 12126940 - 12126852
Alignment:
Q  138 aacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttc 226  Q
    ||||||||||| | || |||||||| ||| | ||||||||||||||||| |  ||||||||| || |||| ||| |||  |||||||||    
T  12126940 aacctctctccattgtctccaaacaatttctctccatcaccaaccgtctcctattctccatcgcagtctcagatgaaaaaatccctttc 12126852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 2576415 - 2576512
Alignment:
Q  158 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaa 255  Q
    ||||||||||| ||||||||||| ||||| || |||||  |||||||| |||||  ||||||||||||||||  |||||||||||| ||| |||||||    
T  2576415 aaacagtttttatccatcaccaatcgtcttcgattctcggtcacaatcaccgattgaaccatccctttcatttgtcgcctcttcgaaaggatccctaa 2576512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 15837979 - 15838079
Alignment:
Q  155 tccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttcccta 254  Q
    |||||||||||| | ||||||||||||||||| || |||||| ||| ||||   ||| |||| |||||||||||||||  ||||||| | ||||||||||    
T  15837979 tccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattcctaacctcttccaaaggttcccta 15838078  T
Q  255 a 255  Q
    |    
T  15838079 a 15838079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 12847004 - 12846948
Alignment:
Q  130 ttacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtct 186  Q
    ||||||||||| |||||||||||| ||||| |||||  | |||||||||||||||||    
T  12847004 ttacttggaacatctctccctcgtttccaagcagttcctctccatcaccaaccgtct 12846948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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