View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10040_low_6 (Length: 337)
Name: NF10040_low_6
Description: NF10040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10040_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 37531940 - 37532125
Alignment:
| Q |
15 |
aacctgtgtatcaacttcaaacataatcaatccgatcgagattaaaactcttgggccattgaagagtcgtgagcagccccatggcacctgcccaaacctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37531940 |
aacctgtgtatcaacttcaaacataatcaatccgatcgagattaaaactcttgggccattgaagagtcgtgagcagccccatggcacctgcccaaacctc |
37532039 |
T |
|
| Q |
115 |
gaacctccatggcttccagcacatctttgcagccttaaactctctattatcacctctaaatttaatagaagccccaactatcattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532040 |
gaacctccatggcttccagcacatctttgcagccttaaactctctattatcacctctaaatttaatagaagccccaactatcattg |
37532125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 37532200 - 37532325
Alignment:
| Q |
198 |
ttgcactaggtgagaatttgcgactatctgaaatatattctcaagaataaatataaaaacttgaaacaaattatatttgtattacgtacactcatttata |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532200 |
ttgcactaggtgagaatttgcgactatctgaaatatattctcaagaataaatataaaaacttgaaacaaattatatttgtattacgtacactcatttata |
37532299 |
T |
|
| Q |
298 |
ta----tatgttattcacaactatat |
319 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
37532300 |
tatatgtatgttattcacaactatat |
37532325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University