View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10040_low_7 (Length: 292)

Name: NF10040_low_7
Description: NF10040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10040_low_7
NF10040_low_7
[»] chr2 (1 HSPs)
chr2 (7-292)||(37717308-37717593)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 37717593 - 37717308
Alignment:
Q  7 tttggagttggtatgacattcaatggatgaacgagtggtcgcggccatcagacgtatgtgacagacataattattgtggtagctttagcagctgcaacaa 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37717593 tttggaggtggtatgacattcaatggatgaacgagtggtcgcggccatcagacgtatgtgacagacataattattgtggtagctttagcagctgcaacaa 37717494  T
Q  107 aaataattggataccgtgtaagtgtttgccaggatttcgtcgcaggttgtcggataatgatcatggttaccttggagaacgctatcaaggatgtgttaga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37717493 aaataattggataccgtgtaagtgtttgccaggatttcgtcgcaggttgtcggataatgatcatggttaccttggagaacgctaccaaggatgtgttaga 37717394  T
Q  207 aaatcatccaaacagtgtgtcacagcagctaccgacaataacatgatattcatcaaactaaccaacattaaagtgggaaacccaga 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37717393 aaatcatccaaacagtgtgtcacagcagctaccgacaataacatgatattcatcaaactaaccaacataaaagtgggaaacccaga 37717308  T

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