View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10040_low_9 (Length: 253)

Name: NF10040_low_9
Description: NF10040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10040_low_9
NF10040_low_9
[»] chr3 (2 HSPs)
chr3 (13-253)||(35445962-35446202)
chr3 (104-213)||(35681987-35682096)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 35445962 - 35446202
Alignment:
13 tggtggtccagtggctattctggcagcactttgggccttagtaaacttcccaactacaaaattccccgatcgtatccctcccatctgtattacttttggt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35445962 tggtggtccagtggctattctggcagcactttgggccttagtaaacttcccaactacaaaattccccgatcgtatccctcccatctgtattacttttggt 35446061  T
113 tctcctttagttggaaatcacatattttctcatgctacaaggagagaaaattggactgaccacttcttccattttgtgatgagatatgacatagtgccaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35446062 tctcctttagttggaaatcacatattttctcatgctacaaggagagaaaattggactgaccacttcttccattttgtgatgagatatgacatagtgccaa 35446161  T
213 gaatcctccttgcccctctatcttctttcgaccaaaaattt 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
35446162 gaatcctccttgcccctctatcttctttcgaccaaaaattt 35446202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 213
Target Start/End: Complemental strand, 35682096 - 35681987
Alignment:
104 acttttggttctcctttagttggaaatcacatattttctcatgctacaaggagagaaaattggactgaccacttcttccattttgtgatgagatatgaca 203  Q
    |||||||||||||| || ||||| ||||| ||||| ||||||||| |||  |||||||| ||| || | || ||| | || ||||| |||  ||||||||    
35682096 acttttggttctcccttggttggtaatcatatattctctcatgcttcaaacagagaaaaatggtctcatcatttcatacactttgtcatgcaatatgaca 35681997  T
204 tagtgccaag 213  Q
    | ||||||||    
35681996 ttgtgccaag 35681987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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