View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10040_low_9 (Length: 253)

Name: NF10040_low_9
Description: NF10040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10040_low_9
NF10040_low_9
[»] chr3 (2 HSPs)
chr3 (13-253)||(35445962-35446202)
chr3 (104-213)||(35681987-35682096)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 35445962 - 35446202
Alignment:
Q  13 tggtggtccagtggctattctggcagcactttgggccttagtaaacttcccaactacaaaattccccgatcgtatccctcccatctgtattacttttggt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35445962 tggtggtccagtggctattctggcagcactttgggccttagtaaacttcccaactacaaaattccccgatcgtatccctcccatctgtattacttttggt 35446061  T
Q  113 tctcctttagttggaaatcacatattttctcatgctacaaggagagaaaattggactgaccacttcttccattttgtgatgagatatgacatagtgccaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35446062 tctcctttagttggaaatcacatattttctcatgctacaaggagagaaaattggactgaccacttcttccattttgtgatgagatatgacatagtgccaa 35446161  T
Q  213 gaatcctccttgcccctctatcttctttcgaccaaaaattt 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35446162 gaatcctccttgcccctctatcttctttcgaccaaaaattt 35446202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 213
Target Start/End: Complemental strand, 35682096 - 35681987
Alignment:
Q  104 acttttggttctcctttagttggaaatcacatattttctcatgctacaaggagagaaaattggactgaccacttcttccattttgtgatgagatatgaca 203  Q
    |||||||||||||| || ||||| ||||| ||||| ||||||||| |||  |||||||| ||| || | || ||| | || ||||| |||  ||||||||    
T  35682096 acttttggttctcccttggttggtaatcatatattctctcatgcttcaaacagagaaaaatggtctcatcatttcatacactttgtcatgcaatatgaca 35681997  T
Q  204 tagtgccaag 213  Q
    | ||||||||    
T  35681996 ttgtgccaag 35681987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University