View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_high_1 (Length: 684)
Name: NF10041_high_1
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 12 - 669
Target Start/End: Complemental strand, 23496241 - 23495595
Alignment:
| Q |
12 |
catcatcactgatatatttgactcttctttcttttttcgatttatcacataataacttaataggtctgattccaactaaaacaactgaacaatgaaaatt |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23496241 |
catcatcactgatatatttgactcttctttctttttttgatttatcatataataacttaataggtctgattccaactaaaacaactgaacaatgaaaatt |
23496142 |
T |
|
| Q |
112 |
aaattttttaggtatgtcttataacatgttaaatggaacaattccacgttggtgtttttctatttgtttgttgtaaatgttgcatctaaatgacaaacag |
211 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23496141 |
aaattttttaggtatgtcttataacatgttaaatggaacaattccacgttggtgtttttctatttgtttattgtaaatgttgcatctaaatgacaaacag |
23496042 |
T |
|
| Q |
212 |
gttagagggtcaagtagtgaattaccaacatgttctttgcaatattgaatgatattttggacctttagatagaatgagatggtgaaatacatgaccatgc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23496041 |
gttagagggtcaagtagtgaattaccaacatgttctttgcaatattgaatgatattttggacctttagatagaatgagatggtgaaatacatgaccatgc |
23495942 |
T |
|
| Q |
312 |
tgaaatgaatcattatttgatataggacttgtttattatcacatgtctgcttgagcatcttcattggtgaaaagggaggttattacatgtctacatctac |
411 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23495941 |
tgaaatgaatcagtatttgatataggacttgtttattattacatgtctgcttaagcatcttcattggtgaaaagggaggttattacatgtctacatctac |
23495842 |
T |
|
| Q |
412 |
atcaaatgtaatattattggctctgatgagtgagnnnnnnntgcaaagaacaaaactctcgtatcgttctcacggctagaatccatgttaacataatcca |
511 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23495841 |
atcaaatgtaatattattggctctgatgagtgaaaaaaaaatgcaaagaacaaaactctcgtatcgttctcacggctagaatccatgttaacatgctcca |
23495742 |
T |
|
| Q |
512 |
attgtataactcaggaataatcgattcttaaatctaagaactcacttaagaatactgttggagatgctatgagactgataaaagaatctgttataaaact |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23495741 |
attgtataactcaggaataatcgattcttaaatctaagaactcacttaagaatactgttggagatgctatgagactgataaaagaat-----------ct |
23495653 |
T |
|
| Q |
612 |
gttataatttttagaaaattgtaaaaatgaaaagtcaacgaaaccaacacatgttagt |
669 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23495652 |
gttataatttttagaaaattgtaaaaatgaaaagtcaacgaaaccaacacatgttagt |
23495595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 14553552 - 14553510
Alignment:
| Q |
130 |
ttataacatgttaaatggaacaattccacgttggtgtttttct |
172 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
14553552 |
ttataacatgttaaatggaacaattccacattggtgttattct |
14553510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 37400532 - 37400572
Alignment:
| Q |
132 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
172 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| |
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| T |
37400532 |
ataacatgttaaatggaacaattccacattggtgttattct |
37400572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 37533540 - 37533500
Alignment:
| Q |
132 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
172 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
37533540 |
ataacatgttaaatggaacaattccacattggtgttattct |
37533500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 37594764 - 37594724
Alignment:
| Q |
132 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
172 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
37594764 |
ataacatgttaaatggaacaattccacattggtgttattct |
37594724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 37640312 - 37640272
Alignment:
| Q |
132 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
172 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
37640312 |
ataacatgttaaatggaacaattccacattggtgttattct |
37640272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 37697227 - 37697187
Alignment:
| Q |
132 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
172 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
37697227 |
ataacatgttaaatggaacaattccacattggtgttattct |
37697187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 37703108 - 37703068
Alignment:
| Q |
132 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
172 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
37703108 |
ataacatgttaaatggaacaattccacattggtgttattct |
37703068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 37824334 - 37824295
Alignment:
| Q |
133 |
taacatgttaaatggaacaattccacgttggtgtttttct |
172 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
37824334 |
taacatgttaaatggaacaattccacattggtgttattct |
37824295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 37436148 - 37436112
Alignment:
| Q |
131 |
tataacatgttaaatggaacaattccacgttggtgtt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
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|
| T |
37436148 |
tataacatgttaaatggaacaattccacagtggtgtt |
37436112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 37712064 - 37712024
Alignment:
| Q |
132 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
172 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
37712064 |
ataacatgttaaatggaacaattccacagtggtgttattct |
37712024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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