View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_high_10 (Length: 365)
Name: NF10041_high_10
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 55101099 - 55101427
Alignment:
| Q |
1 |
agaatgatatatctacaccttctgatctattttaaggaactttctaatctattacattaaacnnnnnnnnaaaatttaggttaaacctaattcaacatct |
100 |
Q |
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| T |
55101099 |
agaatgatatatctacaccttccgatctattttaaggaactttctaatctattacattaaactttttattaaaatttaggttaaacctaattcaacatct |
55101198 |
T |
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| Q |
101 |
ttaaaactaaattgtaaggtgtgaaccatcaccatatataaactcattttccgataaggactcataccttatcctactagagaaacagaagtagtaataa |
200 |
Q |
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| T |
55101199 |
ttgaaactaaat-----------------caccatatataaactcattttccgataaggactcataccttatcctactagagagacagaagtagtaataa |
55101281 |
T |
|
| Q |
201 |
tatcaatatgtgtcattatttaaggccgtaagagtatcattaattcactatcatcacatatccattgatagagtggaatcaatctaatacgggaatttgt |
300 |
Q |
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| T |
55101282 |
tatcaatatgtgtcattatttaaggccgtaagagtatcattaattaact---atcacatatccattgatagagtggaatcaatctaatacgggaatttgt |
55101378 |
T |
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| Q |
301 |
cctgtaatgataagtaggtgatatttccaatgacccctttgtttgatcc |
349 |
Q |
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| T |
55101379 |
cctgtaatgataagatggtgatatttccaatgacccctttgtttgatcc |
55101427 |
T |
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