View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_high_14 (Length: 330)
Name: NF10041_high_14
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 36224053 - 36223744
Alignment:
| Q |
5 |
gtttggtggttctaaacaaatgtcgagggctgaccgtcttctctaatcctcttggcaatgtttcaagatttgtgcaaccattgagtgttacttgaaaatt |
104 |
Q |
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| T |
36224053 |
gtttggtggttctaaacaaatgtcgagggctgaccatcttctctaatcctcttggcaatgtttcaagatttgtgcaaccattgagtgttacttacaaatt |
36223954 |
T |
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| Q |
105 |
atggagtttgaaaaaagaacgaggaagtcttttgattttgatgttttcattaagatagagaaaacccagatgctccaatttaacaattgaattgggcaga |
204 |
Q |
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| T |
36223953 |
atggagtttgaaaaaagaacgaggaagtcttttgattttgatgttttcattaagatagagaacacccagatgctccaatttaacaattgaattaggcaga |
36223854 |
T |
|
| Q |
205 |
gtgtcaaaggaagaaccacttaaatttaaatatcgcaagtatttatatcttgatacccacgtatccaacaatgtttcattgtcaagattgggaaatataa |
304 |
Q |
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| T |
36223853 |
gtgtcaaaggaagaaccacttaaatttaaatatcgcaagtatttatatcttgatacccacgtatccaacaatgtctcgttgtcaagattgggaaatataa |
36223754 |
T |
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| Q |
305 |
ttgttcttac |
314 |
Q |
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|||||||||| |
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| T |
36223753 |
ttgttcttac |
36223744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 5 - 290
Target Start/End: Complemental strand, 36218860 - 36218572
Alignment:
| Q |
5 |
gtttggtggttctaaacaaatgtcgagggctgaccgtcttctctaatcctcttggcaatgtttcaagatttgtgcaaccattgagtgt---tacttgaaa |
101 |
Q |
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| T |
36218860 |
gtttggtggttataaacaaatgttgaaggctgaccatctttcctaatcctcttggcaatgtttcaagctctgtgcatccactgagtatcaagacttgcaa |
36218761 |
T |
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| Q |
102 |
attatggagtttgaaaaaagaacgaggaagtcttttgattttgatgttttcattaagatagagaaaacccagatgctccaatttaacaattgaattgggc |
201 |
Q |
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| T |
36218760 |
attatagagtttaaaaatagaatgaggaagttttttgattttgctgttattcttgagaccgagaacacgcaggtgctccacctttgcaattgacttaggc |
36218661 |
T |
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| Q |
202 |
agagtgtcaaaggaagaaccacttaaatttaaatatcgcaagtatttatatcttgatacccacgtatccaacaatgtttcattgtcaag |
290 |
Q |
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| T |
36218660 |
agagtctcaaacaaagaatcgttaaaatctacatatcgcaagtatttatattttgatacccacgtatgcaccaatgtttcattgtcaag |
36218572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 35951481 - 35951587
Alignment:
| Q |
163 |
agaaaacccagatgctccaatttaacaattgaattgggcagagtgtcaaaggaagaaccacttaaatttaaatatcgcaagtatttatatcttgataccc |
262 |
Q |
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| T |
35951481 |
agaaaacgcaggtgctctaattttgtaattgaattgggcagagtttcaaatgaagaatcacttaaatctaaatagcgcaagtatttatatcttgataccc |
35951580 |
T |
|
| Q |
263 |
acgtatc |
269 |
Q |
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| T |
35951581 |
atgtatc |
35951587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 32726561 - 32726646
Alignment:
| Q |
174 |
atgctccaatttaacaattgaattgggcagagtgtcaaaggaagaaccacttaaatttaaatatcgcaagtatttatatcttgata |
259 |
Q |
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| T |
32726561 |
atgctccaatttagcaatcgagttaggtagggtatcaaaggaagaatctcttaaacctaaatatcgcaagtatttgtatcttgata |
32726646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 35945777 - 35945873
Alignment:
| Q |
175 |
tgctccaatttaacaattgaattgggcagagtgtcaaaggaagaaccacttaaatttaaatatcgcaagtatttatatcttgatacccacgtatcca |
271 |
Q |
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| T |
35945777 |
tgctctaatttagaaattgaattgggcatagttttaaacgaggaatcacttaaatctaaaaaacgcaagtatttgtatcttgataaccatgtatcca |
35945873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 26329687 - 26329623
Alignment:
| Q |
208 |
tcaaaggaagaaccacttaaatttaaatatcgcaagtatttatatcttgatacccacgtatccaa |
272 |
Q |
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| T |
26329687 |
tcaaatgaagaatcacttaaatctaaatagcgcaagtatttgtatcttgatatccatgaatccaa |
26329623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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