View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_high_19 (Length: 284)
Name: NF10041_high_19
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 32189746 - 32189496
Alignment:
| Q |
1 |
tataaatacaaaaggcatcctttgtaactaacgttatcgtgcaatcaattgttctcttgtaatctaaccatttgtagctagctacaaaagatccaggtct |
100 |
Q |
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| T |
32189746 |
tataaatacaaaaggcatcctgtgtaactaacgttatcgtgcaatcaattgttctcttgtaatctaacca--------------------atccaggtct |
32189667 |
T |
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| Q |
101 |
atatatcatagtcgatgcattaatcatggtaatgacataaaatctattcaatatatatcacaaattgaagagagnnnnnnntcacataatcaatgctctt |
200 |
Q |
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| T |
32189666 |
atatatcatagtcgatgcattaatcatggtaatgacataaaatctattcaatatatatcacaaattgaagaga--aaaaaatcacataatcaatgctctt |
32189569 |
T |
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| Q |
201 |
gatccatttgtaaattttcatatgttgttattattttgatttctatctcatgaataataaattagggcaaaca |
273 |
Q |
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| T |
32189568 |
gatccatttgtaaattttcatatgttgttattattttgatttctatctcatgaataataaattagggcaaaca |
32189496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 32231955 - 32232014
Alignment:
| Q |
182 |
tcacataatcaatgctcttgatccatttgtaaattttcatatgttgttattattttgattt |
242 |
Q |
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| T |
32231955 |
tcacataatcaatgcttgcaatccatttgtaa-ttttcatatgttattattattttgattt |
32232014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 8855119 - 8855185
Alignment:
| Q |
202 |
atccatttgtaaattttcatatgttgttattattttgatttctatctcatgaataataaattagggcaaa |
271 |
Q |
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| T |
8855119 |
atccatttgtagtttttcatatgtt---attattttgatttcttcctcatgcataataaactagggcaaa |
8855185 |
T |
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