View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_high_28 (Length: 247)
Name: NF10041_high_28
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_high_28 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 1168832 - 1168586
Alignment:
| Q |
1 |
ttgattgacaaatgttaacgaggatctttataagattgattcatctctctttataaaacttcaaatttcataatagaggttcttatgatattttaaatat |
100 |
Q |
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| T |
1168832 |
ttgattgaaaaatattaacgactatctttataagattgattcatctctctttataaaacttcaaatttcataatagaggttcttatgatattttaaatat |
1168733 |
T |
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| Q |
101 |
tcctgcaaaattggagaacaaaattttttcaattcatatatgcctactcagaataaaattgcaa-tttaatttgtatgttttgattgaaaaatcaaaata |
199 |
Q |
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| T |
1168732 |
tcctgcaaaattggagaacaaaatttgctcaattcatatatgtctactcaaaataaaattgcaattttaatttgtatgttttgattgaaaaatcaaaata |
1168633 |
T |
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| Q |
200 |
taatcaagttgtcttcagaatgctatgaaactttgaatattgtttgat |
247 |
Q |
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| T |
1168632 |
-aatcaagttgtcttcagaatgatatgaaactttgaatattgtttgat |
1168586 |
T |
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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 40401085 - 40401001
Alignment:
| Q |
145 |
tactcagaataaaattgcaatttaatttgtatgttttgattgaaaaatcaaaatataatcaagttgtcttcagaatgctatgaaactttg |
234 |
Q |
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| T |
40401085 |
tactcggaataaaattgcaattt----tgtatgttttggttgaaaaataaaaata-aatcgaaacgtcttcaaaatgatatgaaactttg |
40401001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 27750815 - 27750872
Alignment:
| Q |
137 |
tatatgcctactcagaataaaattgcaatttaatttgtatgttttgattgaaaaatcaaaat |
198 |
Q |
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| T |
27750815 |
tatatgcttactcggaagaaaattgcaattt----tgtatgttttgattgaaaaatcaaaat |
27750872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 13072507 - 13072458
Alignment:
| Q |
77 |
aggttcttatgatattttaaatattcctgcaaaattggagaacaaaattt |
126 |
Q |
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| T |
13072507 |
aggttcttatgatattctaaacatacctccaaaattagagaacaaaattt |
13072458 |
T |
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