View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10041_high_3 (Length: 482)

Name: NF10041_high_3
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10041_high_3
NF10041_high_3
[»] chr6 (7 HSPs)
chr6 (176-480)||(33576193-33576497)
chr6 (30-170)||(33576675-33576819)
chr6 (179-387)||(5979182-5979390)
chr6 (419-480)||(5979050-5979111)
chr6 (419-480)||(33569007-33569068)
chr6 (198-258)||(34861615-34861675)
chr6 (419-479)||(19746680-19746740)
[»] scaffold0707 (2 HSPs)
scaffold0707 (176-480)||(5401-5705)
scaffold0707 (30-170)||(5883-6027)
[»] chr3 (3 HSPs)
chr3 (414-480)||(36340138-36340204)
chr3 (75-166)||(36340541-36340632)
chr3 (449-480)||(3837932-3837963)
[»] chr8 (3 HSPs)
chr8 (414-480)||(11345082-11345148)
chr8 (414-481)||(11339400-11339467)
chr8 (418-470)||(11358964-11359016)
[»] chr7 (4 HSPs)
chr7 (414-480)||(24031278-24031344)
chr7 (446-477)||(22100519-22100550)
chr7 (440-480)||(23999462-23999502)
chr7 (444-480)||(26256798-26256834)
[»] chr5 (1 HSPs)
chr5 (440-480)||(23086805-23086845)
[»] chr4 (2 HSPs)
chr4 (424-480)||(23847168-23847224)
chr4 (424-479)||(23840699-23840754)
[»] scaffold0867 (1 HSPs)
scaffold0867 (446-477)||(4682-4713)
[»] scaffold0267 (1 HSPs)
scaffold0267 (449-480)||(13413-13444)


Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 176 - 480
Target Start/End: Complemental strand, 33576497 - 33576193
Alignment:
Q  176 attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattc 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576497 attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattc 33576398  T
Q  276 tgttgtcaaatattgttatctctactgtcttatcttgccgattatagataaatactttgttggttatttcagttgtaaatatcaatgtatctccattctt 375  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576397 tgttgtcaaatattgttatctctactgtcttatctctccgattatagataaatactttgttggttatttcagttgtaaatatcaatgtatctccattctt 33576298  T
Q  376 cgaaaagtacaatggcagcaatgtatctccattcatagtatgtatttgaagattaacgtattcaattctaaataactgagtccaagactcttgaactcca 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576297 cgaaaagtacaatggcagcaatgtatctccattcatagtatgtatttgaagattaacgtattcaattctaaataactgagtccaagactcttgaactcca 33576198  T
Q  476 aactc 480  Q
    |||||    
T  33576197 aactc 33576193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 33576819 - 33576675
Alignment:
Q  30 ttgatttattaagggnnnnnnngttactaaattaatcc----tagttttatttgtgcttaggcttttctgtaatatgcaagtgggaataaatactctttt 125  Q
    |||||||||||||||       ||||||||||||||||    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  33576819 ttgatttattaagggtttttttgttactaaattaatcccggctagttttatttgtgcttaggattttctgtaatatgcaagtgggaataaatactccttt 33576720  T
Q  126 gtgagaatcattttctggagtataattaatataacataaaaacaa 170  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  33576719 gtgagaatcattttctagagtataattaatataacataaaaacaa 33576675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 387
Target Start/End: Complemental strand, 5979390 - 5979182
Alignment:
Q  179 atagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattctgt 278  Q
    ||||||||||||||||| |||   | ||||||||||||||||||| |||| | ||| |||||||||| ||| |||||||| ||   ||||| |||| |||    
T  5979390 atagattcaaacaattgaaaatgatagaagagaacttacttccaatgagtcgaaaccaagctttcaatgtaatcaatggcggagaaccaacttattttgt 5979291  T
Q  279 tgtcaaatattgttatctctactgtcttatcttgccgattatagataaatactttgttggttatttcagttgtaaatatcaatgtatctccattcttcga 378  Q
    ||  || |    || |||||||| ||||||||  |||||||||||||| |||| | |||  | | ||| |||| || |||||||||||||||||||||||    
T  5979290 tggaaattccaattctctctactctcttatctctccgattatagataattactcttttgtctttatcatttgtcaagatcaatgtatctccattcttcga 5979191  T
Q  379 aaagtacaa 387  Q
    || ||||||    
T  5979190 aaggtacaa 5979182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 480
Target Start/End: Complemental strand, 5979111 - 5979050
Alignment:
Q  419 atttgaagattaacgtattcaattctaaataactgagtccaagactcttgaactccaaactc 480  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||    
T  5979111 atttgaagattaacatattcaaatctaaataactgagtccaagactcttggactccaaactc 5979050  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 480
Target Start/End: Complemental strand, 33569068 - 33569007
Alignment:
Q  419 atttgaagattaacgtattcaattctaaataactgagtccaagactcttgaactccaaactc 480  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  33569068 atttgaagattaacatattcaattctaaataactgactccaagactcgtgaactccaaactc 33569007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 34861615 - 34861675
Alignment:
Q  198 aacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggc 258  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||| || |||||    
T  34861615 aacagtagaagagaacttacttccaaggagtcggaactaagctttcaacgtaatccatggc 34861675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 419 - 479
Target Start/End: Original strand, 19746680 - 19746740
Alignment:
Q  419 atttgaagattaacgtattcaattctaaataactgagtccaagactcttgaactccaaact 479  Q
    |||| |||||||| ||| |||||||||||||||  ||||||||||||||||||||||||||    
T  19746680 atttcaagattaaagtagtcaattctaaataacaaagtccaagactcttgaactccaaact 19746740  T

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Target: scaffold0707 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 176 - 480
Target Start/End: Complemental strand, 5705 - 5401
Alignment:
Q  176 attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattc 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5705 attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattc 5606  T
Q  276 tgttgtcaaatattgttatctctactgtcttatcttgccgattatagataaatactttgttggttatttcagttgtaaatatcaatgtatctccattctt 375  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5605 tgttgtcaaatattgttatctctactgtcttatctctccgattatagataaatactttgttggttatttcagttgtaaatatcaatgtatctccattctt 5506  T
Q  376 cgaaaagtacaatggcagcaatgtatctccattcatagtatgtatttgaagattaacgtattcaattctaaataactgagtccaagactcttgaactcca 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  5505 cgaaaagtacaatggcagcaatgtatctccattcatagtatgtatttgaagattaacgtattcaattctaaataactgactccaagactcgtgaactcca 5406  T
Q  476 aactc 480  Q
    |||||    
T  5405 aactc 5401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 6027 - 5883
Alignment:
Q  30 ttgatttattaagggnnnnnnngttactaaattaatcc----tagttttatttgtgcttaggcttttctgtaatatgcaagtgggaataaatactctttt 125  Q
    |||||||||||||||       ||||||||||||||||    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  6027 ttgatttattaagggtttttttgttactaaattaatcccggctagttttatttgtgcttaggattttctgtaatatgcaagtgggaataaatactccttt 5928  T
Q  126 gtgagaatcattttctggagtataattaatataacataaaaacaa 170  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  5927 gtgagaatcattttctagagtataattaatataacataaaaacaa 5883  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 480
Target Start/End: Complemental strand, 36340204 - 36340138
Alignment:
Q  414 tatgtatttgaagattaacgtattcaattctaaataactgagtccaagactcttgaactccaaactc 480  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||  |||||||||    
T  36340204 tatggatttgaagattaatgtatttaattctaaataactgagtccaagactcttgagatccaaactc 36340138  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 36340632 - 36340541
Alignment:
Q  75 atttgtgcttaggcttttctgtaatatgcaagtgggaataaatactcttttgtgagaatcattttctggagtataattaatataacataaaa 166  Q
    |||||||||||   ||||||||||||| ||||  |||| |||| |||||| ||||||||||| ||||||  ||| |||||||||| ||||||    
T  36340632 atttgtgcttaactttttctgtaatatccaagatggaacaaatcctctttggtgagaatcatcttctgggatattattaatataaaataaaa 36340541  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 480
Target Start/End: Complemental strand, 3837963 - 3837932
Alignment:
Q  449 aactgagtccaagactcttgaactccaaactc 480  Q
    ||||||||||||||||||||||||||||||||    
T  3837963 aactgagtccaagactcttgaactccaaactc 3837932  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 480
Target Start/End: Original strand, 11345082 - 11345148
Alignment:
Q  414 tatgtatttgaagattaacgtattcaattctaaataactgagtccaagactcttgaactccaaactc 480  Q
    |||| ||||||||||||| ||| |||||||||||||| ||||||||||| ||||||| |||||||||    
T  11345082 tatgcatttgaagattaaagtagtcaattctaaataattgagtccaagattcttgaaatccaaactc 11345148  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 481
Target Start/End: Original strand, 11339400 - 11339467
Alignment:
Q  414 tatgtatttgaagattaacgtattcaattctaaataactgagtccaagactcttgaactccaaactcg 481  Q
    |||| |||| |||||||| ||| |||||||||||||| ||||||||||| ||||||| ||||||||||    
T  11339400 tatgcatttcaagattaaagtagtcaattctaaataattgagtccaagattcttgaaatccaaactcg 11339467  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 470
Target Start/End: Original strand, 11358964 - 11359016
Alignment:
Q  418 tatttgaagattaacgtattcaattctaaataactgagtccaagactcttgaa 470  Q
    ||||| |||||||  ||| |||||||||||||| ||||||||||| |||||||    
T  11358964 tatttcaagattagagtagtcaattctaaataattgagtccaagattcttgaa 11359016  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 414 - 480
Target Start/End: Complemental strand, 24031344 - 24031278
Alignment:
Q  414 tatgtatttgaagattaacgtattcaattctaaataactgagtccaagactcttgaactccaaactc 480  Q
    |||| |||| |||||||| |||  ||||||||||||  |||||||||||||||||||||||||||||    
T  24031344 tatgcatttcaagattaaagtagccaattctaaatagttgagtccaagactcttgaactccaaactc 24031278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 477
Target Start/End: Complemental strand, 22100550 - 22100519
Alignment:
Q  446 aataactgagtccaagactcttgaactccaaa 477  Q
    ||||||||||||||||||||||||||||||||    
T  22100550 aataactgagtccaagactcttgaactccaaa 22100519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 480
Target Start/End: Original strand, 23999462 - 23999502
Alignment:
Q  440 attctaaataactgagtccaagactcttgaactccaaactc 480  Q
    ||||||||||||| |||||| |||| |||||||||||||||    
T  23999462 attctaaataactaagtccacgacttttgaactccaaactc 23999502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 480
Target Start/End: Complemental strand, 26256834 - 26256798
Alignment:
Q  444 taaataactgagtccaagactcttgaactccaaactc 480  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  26256834 taaataattgagtccaagactcttgaactccatactc 26256798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 480
Target Start/End: Complemental strand, 23086845 - 23086805
Alignment:
Q  440 attctaaataactgagtccaagactcttgaactccaaactc 480  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  23086845 attctaaacaactgagtccaagactcttgaactccaaactc 23086805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 480
Target Start/End: Original strand, 23847168 - 23847224
Alignment:
Q  424 aagattaacgtattcaattctaaataactgagtccaagactcttgaactccaaactc 480  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||||| | ||||||    
T  23847168 aagattaaagtagtcaattctaaataactgagtctaagactcttgaaccctaaactc 23847224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 424 - 479
Target Start/End: Complemental strand, 23840754 - 23840699
Alignment:
Q  424 aagattaacgtattcaattctaaataactgagtccaagactcttgaactccaaact 479  Q
    |||||||| ||| |||||||||||||| |||||||||||||| ||||| |||||||    
T  23840754 aagattaaagtagtcaattctaaataattgagtccaagactcctgaaccccaaact 23840699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 477
Target Start/End: Original strand, 4682 - 4713
Alignment:
Q  446 aataactgagtccaagactcttgaactccaaa 477  Q
    ||||||||||||||||||||||||||||||||    
T  4682 aataactgagtccaagactcttgaactccaaa 4713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 480
Target Start/End: Complemental strand, 13444 - 13413
Alignment:
Q  449 aactgagtccaagactcttgaactccaaactc 480  Q
    ||||||||||||||||||||||||||||||||    
T  13444 aactgagtccaagactcttgaactccaaactc 13413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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