View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_high_30 (Length: 242)
Name: NF10041_high_30
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 15174153 - 15174365
Alignment:
| Q |
11 |
ttggtgttgttgctggtgtctcagatgctattaacagtggtaatggttcatggggacctttatttgggaagctattctttgcattttgggtcattgttca |
110 |
Q |
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| T |
15174153 |
ttggtgttgttgctggtgtctcagatgctattaacagtggtagtggttcatggggacctttatttgggaagctattctttgcattttgggtcattgttca |
15174252 |
T |
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| Q |
111 |
tttatatcctttccttaaaggtcttatgggaaaacaaaacaggactcctactattgtggtactttggtcaatccttttggcttcaattttctcattgatt |
210 |
Q |
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| T |
15174253 |
tttatatcctttccttaaaggtctcatgggaaaacaaaacaggactcctaccattgtggtgctttggtcaatccttttggcatcaattttctcattgatt |
15174352 |
T |
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| Q |
211 |
tgggttaggattg |
223 |
Q |
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| T |
15174353 |
tgggttaggattg |
15174365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 13822627 - 13822571
Alignment:
| Q |
85 |
ttctttgcattttgggtcattgttcatttatatcctttccttaaaggtcttatggga |
141 |
Q |
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| T |
13822627 |
ttctttgcattttgggttatcgttcatctctaccctttccttaaaggtcttatggga |
13822571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 16735536 - 16735592
Alignment:
| Q |
85 |
ttctttgcattttgggtcattgttcatttatatcctttccttaaaggtcttatggga |
141 |
Q |
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| T |
16735536 |
ttctttgcattttgggttatcgttcatctctacccttttcttaaaggttttatggga |
16735592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 54381163 - 54381089
Alignment:
| Q |
58 |
tcatggggacctttatttgggaagctattctttgcattttgggtcattgttcatttatatcctttccttaaaggt |
132 |
Q |
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| T |
54381163 |
tcatggggacctctatttggaaaactcttcttttccttctgggtgattgtccatctatatccattccttaaaggt |
54381089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 1173971 - 1173897
Alignment:
| Q |
58 |
tcatggggacctttatttgggaagctattctttgcattttgggtcattgttcatttatatcctttccttaaaggt |
132 |
Q |
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| T |
1173971 |
tcatggggaccattatttgggaaactaatgttttccttttgggtgattgttcacttgtttccattccttaaaggt |
1173897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 30260199 - 30260301
Alignment:
| Q |
58 |
tcatggggacctttatttgggaagctattctttgcattttgggtcattgttcatttatatcctttccttaaaggtcttatgggaaaacaaaacaggactc |
157 |
Q |
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| T |
30260199 |
tcatggggacttttatttgggaaggtttttttctctttgtgggtcattgtgcacttgtaccctttcctcaaaggtctactgggaaggcaaaacagaactc |
30260298 |
T |
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| Q |
158 |
cta |
160 |
Q |
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||| |
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| T |
30260299 |
cta |
30260301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 44374897 - 44374761
Alignment:
| Q |
11 |
ttggtgttgttgctggtgtctcagatgctattaacagtggtaatggttcatggggacctttatttgggaagctattctttgcattttgggtcattgttca |
110 |
Q |
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|||| ||| ||| |||||| |||||||| || |||| ||| ||| ||||||||| || |||||||| ||| |||| ||||| | ||||| ||| | || |
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| T |
44374897 |
ttggagttattgttggtgtttcagatgcaataaacaatggctatgattcatggggtccattatttggcaagttattttttgctctatgggttattttaca |
44374798 |
T |
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| Q |
111 |
tttatatcctttccttaaaggtcttatgggaaaacaa |
147 |
Q |
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| T |
44374797 |
tctttatccatttcttaagggtgttatgggaaaacaa |
44374761 |
T |
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