View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10041_high_35 (Length: 239)

Name: NF10041_high_35
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10041_high_35
NF10041_high_35
[»] chr6 (17 HSPs)
chr6 (1-223)||(180266-180488)
chr6 (1-136)||(34837150-34837285)
chr6 (9-200)||(606625-606816)
chr6 (1-157)||(7926797-7926953)
chr6 (9-112)||(6657915-6658018)
chr6 (37-199)||(19780181-19780343)
chr6 (3-148)||(1856752-1856896)
chr6 (77-152)||(12144075-12144151)
chr6 (28-138)||(6454403-6454512)
chr6 (9-138)||(9425503-9425632)
chr6 (9-155)||(12453713-12453862)
chr6 (1-50)||(12143719-12143768)
chr6 (43-132)||(27903211-27903301)
chr6 (100-148)||(7633386-7633434)
chr6 (1-54)||(31116416-31116469)
chr6 (3-83)||(5428768-5428848)
chr6 (90-138)||(13326545-13326592)
[»] chr7 (28 HSPs)
chr7 (9-181)||(41508068-41508240)
chr7 (4-153)||(7307436-7307586)
chr7 (10-197)||(12506660-12506847)
chr7 (10-195)||(12485230-12485415)
chr7 (3-155)||(20949067-20949218)
chr7 (15-144)||(46341502-46341631)
chr7 (61-148)||(37048576-37048663)
chr7 (43-155)||(46101254-46101366)
chr7 (56-200)||(42935403-42935547)
chr7 (42-149)||(2195805-2195914)
chr7 (9-152)||(10599758-10599901)
chr7 (9-155)||(14568351-14568497)
chr7 (1-138)||(6549069-6549206)
chr7 (9-149)||(14650110-14650247)
chr7 (65-180)||(943102-943217)
chr7 (9-82)||(14658782-14658855)
chr7 (122-180)||(6549222-6549280)
chr7 (61-148)||(508464-508550)
chr7 (90-182)||(43051415-43051504)
chr7 (9-117)||(18145807-18145915)
chr7 (1-121)||(34470086-34470206)
chr7 (1-53)||(45072518-45072570)
chr7 (1-80)||(2122418-2122497)
chr7 (9-111)||(15033312-15033413)
chr7 (59-104)||(35333328-35333373)
chr7 (46-146)||(9183282-9183382)
chr7 (13-69)||(15028788-15028844)
chr7 (119-155)||(17205123-17205159)
[»] chr8 (26 HSPs)
chr8 (1-190)||(31658811-31659000)
chr8 (9-187)||(36054778-36054956)
chr8 (1-181)||(8251204-8251384)
chr8 (1-155)||(2207766-2207918)
chr8 (1-181)||(16890268-16890451)
chr8 (1-160)||(2152312-2152469)
chr8 (9-153)||(1445349-1445493)
chr8 (3-195)||(38209521-38209711)
chr8 (50-149)||(40694232-40694331)
chr8 (58-155)||(11778032-11778129)
chr8 (61-154)||(30112485-30112578)
chr8 (9-180)||(36408193-36408364)
chr8 (1-147)||(2520133-2520277)
chr8 (56-149)||(40696612-40696704)
chr8 (3-180)||(30870743-30870919)
chr8 (25-145)||(43836938-43837058)
chr8 (3-90)||(40314274-40314361)
chr8 (9-75)||(30653639-30653705)
chr8 (14-151)||(29916963-29917099)
chr8 (101-182)||(35431553-35431633)
chr8 (14-82)||(27518532-27518600)
chr8 (99-151)||(30654260-30654312)
chr8 (104-155)||(21504884-21504935)
chr8 (93-148)||(36204128-36204183)
chr8 (93-154)||(11388093-11388154)
chr8 (56-88)||(5923879-5923911)
[»] chr2 (34 HSPs)
chr2 (1-201)||(38496421-38496621)
chr2 (1-200)||(3269306-3269505)
chr2 (1-200)||(3269865-3270064)
chr2 (1-180)||(3268767-3268946)
chr2 (1-155)||(40503869-40504023)
chr2 (1-200)||(38214061-38214261)
chr2 (1-199)||(40442668-40442866)
chr2 (1-199)||(39063594-39063793)
chr2 (9-200)||(19285829-19286020)
chr2 (14-199)||(4015801-4015987)
chr2 (11-155)||(16781256-16781399)
chr2 (9-112)||(32872378-32872481)
chr2 (9-200)||(7011043-7011231)
chr2 (1-112)||(31404982-31405093)
chr2 (9-151)||(14200375-14200516)
chr2 (1-190)||(40664191-40664383)
chr2 (9-178)||(31365049-31365218)
chr2 (75-155)||(3711912-3711991)
chr2 (56-112)||(34262746-34262802)
chr2 (56-155)||(35310800-35310899)
chr2 (1-71)||(21794914-21794985)
chr2 (10-111)||(45723926-45724028)
chr2 (65-138)||(16268375-16268448)
chr2 (98-200)||(21794804-21794907)
chr2 (58-104)||(17368928-17368974)
chr2 (57-154)||(21229486-21229584)
chr2 (46-130)||(28650239-28650323)
chr2 (105-200)||(23959979-23960074)
chr2 (105-148)||(44883267-44883310)
chr2 (9-51)||(34309310-34309352)
chr2 (93-155)||(2761535-2761599)
chr2 (80-155)||(28401238-28401316)
chr2 (9-130)||(34195827-34195944)
chr2 (14-74)||(44883181-44883241)
[»] chr3 (33 HSPs)
chr3 (46-200)||(32211834-32211988)
chr3 (9-200)||(45261313-45261501)
chr3 (1-200)||(40344932-40345129)
chr3 (9-187)||(46918471-46918648)
chr3 (1-200)||(17003577-17003775)
chr3 (9-180)||(30041314-30041484)
chr3 (1-201)||(35455256-35455452)
chr3 (1-180)||(43320137-43320310)
chr3 (3-180)||(8825361-8825535)
chr3 (87-197)||(27721330-27721439)
chr3 (101-181)||(18085649-18085729)
chr3 (31-147)||(25295082-25295198)
chr3 (59-144)||(49983561-49983646)
chr3 (1-152)||(28695539-28695694)
chr3 (1-181)||(52596626-52596808)
chr3 (122-181)||(2564419-2564478)
chr3 (58-148)||(25286165-25286256)
chr3 (56-155)||(41559981-41560080)
chr3 (9-75)||(49983782-49983848)
chr3 (73-134)||(21698510-21698571)
chr3 (29-155)||(55452423-55452553)
chr3 (9-112)||(30577825-30577928)
chr3 (1-125)||(36659210-36659332)
chr3 (9-88)||(43105155-43105234)
chr3 (1-155)||(48271748-48271901)
chr3 (78-148)||(50452368-50452438)
chr3 (58-123)||(49787770-49787835)
chr3 (9-152)||(24650120-24650261)
chr3 (4-71)||(22923709-22923776)
chr3 (3-50)||(42279238-42279285)
chr3 (78-148)||(43105935-43106004)
chr3 (46-148)||(47860601-47860703)
chr3 (68-148)||(48799202-48799280)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-199)||(154290-154488)
[»] chr1 (29 HSPs)
chr1 (9-200)||(36437207-36437398)
chr1 (9-199)||(17971370-17971560)
chr1 (1-199)||(42454872-42455071)
chr1 (1-190)||(28165125-28165316)
chr1 (9-145)||(39150189-39150324)
chr1 (56-199)||(24547376-24547520)
chr1 (9-201)||(42745492-42745683)
chr1 (22-180)||(11435520-11435679)
chr1 (9-180)||(27442380-27442550)
chr1 (1-153)||(31152431-31152581)
chr1 (9-199)||(32715643-32715832)
chr1 (1-200)||(9851813-9852010)
chr1 (18-200)||(28469882-28470064)
chr1 (66-152)||(17988348-17988434)
chr1 (9-155)||(3574720-3574868)
chr1 (1-148)||(31181051-31181199)
chr1 (9-112)||(28723972-28724075)
chr1 (60-133)||(25130026-25130099)
chr1 (1-151)||(46443700-46443848)
chr1 (98-153)||(31003677-31003732)
chr1 (17-165)||(2619702-2619845)
chr1 (56-142)||(29657969-29658054)
chr1 (93-154)||(34702197-34702258)
chr1 (9-112)||(13603106-13603212)
chr1 (3-144)||(948153-948285)
chr1 (9-63)||(17988162-17988216)
chr1 (58-144)||(26976628-26976714)
chr1 (1-69)||(31003584-31003652)
chr1 (1-41)||(45691601-45691641)
[»] chr5 (24 HSPs)
chr5 (10-181)||(6688755-6688928)
chr5 (1-181)||(18704967-18705147)
chr5 (9-202)||(3629217-3629410)
chr5 (1-180)||(11691059-11691236)
chr5 (42-146)||(3257250-3257354)
chr5 (18-146)||(10705027-10705154)
chr5 (3-143)||(2225586-2225726)
chr5 (29-125)||(11983609-11983705)
chr5 (4-156)||(27193004-27193156)
chr5 (1-148)||(4449438-4449585)
chr5 (9-181)||(7735722-7735894)
chr5 (10-91)||(14417914-14417995)
chr5 (9-190)||(19296167-19296348)
chr5 (4-125)||(29948070-29948192)
chr5 (9-149)||(17693562-17693699)
chr5 (37-115)||(36482456-36482534)
chr5 (95-148)||(10656502-10656555)
chr5 (46-155)||(35931539-35931646)
chr5 (93-149)||(10561391-10561447)
chr5 (9-52)||(14917820-14917863)
chr5 (56-130)||(5712716-5712790)
chr5 (93-145)||(73570-73622)
chr5 (38-86)||(10656018-10656066)
chr5 (46-150)||(43442042-43442145)
[»] chr4 (21 HSPs)
chr4 (9-178)||(18838723-18838891)
chr4 (1-132)||(31707352-31707480)
chr4 (18-204)||(34319497-34319682)
chr4 (1-177)||(42312401-42312585)
chr4 (9-203)||(25376852-25377044)
chr4 (9-154)||(33721619-33721768)
chr4 (61-168)||(44884411-44884519)
chr4 (3-139)||(30615129-30615262)
chr4 (9-180)||(27032109-27032278)
chr4 (1-148)||(47231573-47231718)
chr4 (9-150)||(16572251-16572389)
chr4 (137-204)||(42183299-42183366)
chr4 (62-152)||(4960253-4960343)
chr4 (56-197)||(54863874-54864017)
chr4 (9-63)||(32599766-32599820)
chr4 (58-144)||(56093596-56093682)
chr4 (9-104)||(25382395-25382490)
chr4 (56-148)||(21128097-21128189)
chr4 (9-74)||(42183535-42183601)
chr4 (88-125)||(40414163-40414200)
chr4 (60-128)||(2632404-2632470)
[»] scaffold0836 (1 HSPs)
scaffold0836 (37-199)||(2971-3134)
[»] scaffold1809 (1 HSPs)
scaffold1809 (9-199)||(505-696)
[»] scaffold0088 (1 HSPs)
scaffold0088 (1-155)||(51267-51421)
[»] scaffold0015 (1 HSPs)
scaffold0015 (9-180)||(38841-39010)
[»] scaffold0026 (1 HSPs)
scaffold0026 (50-152)||(68798-68897)
[»] scaffold0006 (1 HSPs)
scaffold0006 (9-112)||(131763-131869)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 180488 - 180266
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  180488 tgaatatgtttacaaatatacccttataaaaaattttgaagcgttaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 180389  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  180388 tttaagcaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaaaggagtat 180289  T
Q  201 aatagagtaaataatcaatcgtc 223  Q
    |||||||||||||||||||||||    
T  180288 aatagagtaaataatcaatcgtc 180266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 34837150 - 34837285
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||| |||||||||||||||| ||||||||    
T  34837150 tgaatatttttacaaatataccctcataaaaaattgtgaagcattcaatacatccattaatattaaaaagacaagcattaaataaggggtaaaaaagtct 34837249  T
Q  101 tttaaacaataactacatcttaaaaattgtgatatt 136  Q
    ||||||||||| ||||| ||||||| ||| ||||||    
T  34837250 tttaaacaatagctacaccttaaaagttgcgatatt 34837285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 606625 - 606816
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||||| ||| ||  || |||| ||||||||||||| |||||||||||||| |||  ||||||||||||| |  |||||| |||||| |     
T  606625 tttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaatacagtcattaaataagggattaaaaagtattttaagct 606724  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    |||| |||| ||||||| |||||| |||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||  |||||||||    
T  606725 ataagtacaccttaaaagttgtgacattttcttataaataggaccaaaaaaaattttgaaaattttcttatattaaggaccagagggagtat 606816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 7926953 - 7926797
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||||||||     |||||||||||||||||  ||||||||||||||||| |||| |    
T  7926953 tgaataagattacaaatataccctcataaaaaattgtgaagcattaaatacactctttaatattaaaaagacaactattaaataaggggtatataagttt 7926854  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaaca 157  Q
    | |||| ||||| ||||  |||||| |||||||||||||||||||||| ||||||||    
T  7926853 tctaaaaaataattacactttaaaagttgtgatattttcttataaatatgaccaaca 7926797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 6658018 - 6657915
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||||||||||||| || ||||| |||||||| | | |||||||||||||||||||||||||||| |||| || ||||||| ||||||||    
T  6658018 tttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaaacattaaatgagggttagaaaagtcatttaaaca 6657919  T
Q  109 ataa 112  Q
    ||||    
T  6657918 ataa 6657915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 199
Target Start/End: Complemental strand, 19780343 - 19780181
Alignment:
Q  37 tgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatatt 136  Q
    ||||| |||||||| | | |||||| || |||||| ||||||||||| |||| || |||||||||||||||||||| || ||||||||| |||  |  ||    
T  19780343 tgaagtattaaatatacccactaattttgaaaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaacttt 19780244  T
Q  137 ttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagta 199  Q
    |||||||| ||||||||||    |||||||||||||||||||||| ||| | || ||||||||    
T  19780243 ttcttatatataggaccaaatttttttttgaaaattttcttatatatagaatcggagggagta 19780181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 1856896 - 1856752
Alignment:
Q  3 aatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttt 102  Q
    ||||| ||||||||||||| |||||| |||||  | || |||||||||| || | |||||||||||||| ||| ||||||| || | || ||||||||||    
T  1856896 aatatttttacaaatatactctcatacaaaatg-taaaacattaaatacttccattaatattaaaaagagaaatattaaatgagagatagaaaagtcttt 1856798  T
Q  103 taaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    ||||||||||||    ||||||| |||||||||||| |||||||||    
T  1856797 taaacaataactgatacttaaaagttgtgatatttttttataaata 1856752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 12144075 - 12144151
Alignment:
Q  77 attaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgata-ttttcttataaataggac 152  Q
    ||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||| | |||| |||||||||||||    
T  12144075 attaaataaagggtataaaagtcttttaaataataattacaccttaaaaattgtgacattttttttataaataggac 12144151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 6454403 - 6454512
Alignment:
Q  28 aaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaat 127  Q
    |||||||| ||||| ||||||   ||| | |||||||| ||| |||||||||||||||||| || |||||||||||||  ||||| ||||||| |||| |    
T  6454403 aaaaaattgtgaagtattaaacgtatccattaatattataaatacaaacattaaataaggg-taaaaaagtcttttaagtaataattacatctaaaaagt 6454501  T
Q  128 tgtgatatttt 138  Q
    |||||||||||    
T  6454502 tgtgatatttt 6454512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 9425632 - 9425503
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    ||||||||||||| |||||||||   | ||||| |||||||| ||  |||| ||| ||||||| ||||||||||| |||  || ||||||||||||||||    
T  9425632 tttacaaatatactctcataaaattctgtgaagtattaaatatattcactattatgaaaaagataaacattaaatgaggattaaaaaagtcttttaaaca 9425533  T
Q  109 ataactacatcttaaaaattgtgatatttt 138  Q
    |||| || | || |||| ||||||| ||||    
T  9425532 ataaatatacctcaaaagttgtgatttttt 9425503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 12453713 - 12453862
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataa---ggggtataaaagtcttttaa 105  Q
    ||||||||||||| || ||||||| ||||||| ||||||| ||||  | ||||||| |||||||||  ||||| |||   || || ||||| | ||||||    
T  12453713 tttacaaatatactctaataaaaagttatgaaacattaaacacattcattaatatttaaaagacaataattaattaaatgggagtttaaaaatattttaa 12453812  T
Q  106 acaataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
     ||| ||| ||| ||||||||| |||| ||||||||||||| | ||||||    
T  12453813 gcaaaaaccacaccttaaaaatggtgacattttcttataaaaatgaccaa 12453862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12143719 - 12143768
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaata 50  Q
    ||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  12143719 tgaatatttttacaaatacaccctcataaaaaattgtgaagcattaaata 12143768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 27903301 - 27903211
Alignment:
Q  43 attaaatacat-cgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtga 132  Q
    ||||||||||| | ||||||||||||||  ||| ||| ||||||  |||| ||||||||||| |||||||| ||||  |||||||||||||    
T  27903301 attaaatacattccactaatattaaaaaagcaatcataaaataaaaggtagaaaagtcttttgaacaataattacaatttaaaaattgtga 27903211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 7633386 - 7633434
Alignment:
Q  100 ttttaaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    |||||| |||||||||||||||||||||||||  ||||||||| |||||    
T  7633386 ttttaagcaataactacatcttaaaaattgtgtcattttcttacaaata 7633434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31116469 - 31116416
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatc 54  Q
    |||||||||||||||||||||||| ||| | |||| |||| |||| ||||||||    
T  31116469 tgaatatgtttacaaatatacccttatagagaattgtgaaacattcaatacatc 31116416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 5428848 - 5428768
Alignment:
Q  3 aatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaat 83  Q
    ||||| ||||||||||||| ||  || ||| ||||||| |||| ||| |||  |||||||||||||||| || ||||||||    
T  5428848 aatatttttacaaatatactcttgtagaaagttatgaaacattgaatgcattcactaatattaaaaagataatcattaaat 5428768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 13326545 - 13326592
Alignment:
Q  90 tataaaagtcttttaaacaataactacatcttaaaaattgtgatatttt 138  Q
    ||||||||||||||||  |||||||||| ||||||||||||||| ||||    
T  13326545 tataaaagtcttttaat-aataactacaccttaaaaattgtgatttttt 13326592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 41508240 - 41508068
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    ||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  41508240 tttacaaatataccctcataaaaaattgtgaagcattaaatacacccactaatattaaaaagacaaacattaaataaggggtaaaaaagtcttttaagca 41508141  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatat 181  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||    ||||||||||||||| ||||||    
T  41508140 ataactacaccttaaaaattgtgatattttcttatatttaggaccaaatttttttttgaaaattttattatat 41508068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 7307586 - 7307436
Alignment:
Q  4 atatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtat-aaaagtcttt 102  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| |||||| |||||||||||| || |||| |||||    
T  7307586 atatttttacaaatatactctcataaaaaattgtgaagcattaaatacatccactaatattaaaaaaacaaaccttaaataaggggcataaaaaatcttt 7307487  T
Q  103 taaacaataactacatcttaaaaattgtgatattttcttataaataggacc 153  Q
    ||||||||||||||   |||||| |||||| ||||||||||||||| ||||    
T  7307486 taaacaataactactctttaaaagttgtgacattttcttataaatatgacc 7307436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 12506847 - 12506660
Alignment:
Q  10 ttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaa 109  Q
    |||||||||||||||||||||||||| |||| || ||||||||   ||| | |||||||| | | |||||||||||||| || ||||||||||| |||||    
T  12506847 ttacaaatataccctcataaaaaattgtgaaacaataaatacacttactgagattaaaaacaaacacattaaataagggatagaaaagtcttttgaacaa 12506748  T
Q  110 taactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggag 197  Q
    |||||||| ||||||| |||| |||||||||||||  ||||||||  |   ||||||||||||||||||||| |||||||| ||||||    
T  12506747 taactacaccttaaaagttgtaatattttcttatatttaggaccagaattatttttgaaaattttcttatatataggaccggagggag 12506660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 12485415 - 12485230
Alignment:
Q  10 ttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaa 109  Q
    |||||||||||||||||||||||||| |||| || ||||||||   ||| | |||||||| | | |||||||||||||| || ||||||||||| |||||    
T  12485415 ttacaaatataccctcataaaaaattgtgaaacaataaatacacttactgagattaaaaacaaacacattaaataagggatagaaaagtcttttgaacaa 12485316  T
Q  110 taactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaaggg 195  Q
    |||||||| ||||||| |||| ||||||| |||||  ||||||||  |   ||||||||||||||||||||| |||||||| ||||    
T  12485315 taactacaccttaaaagttgtaatattttattatatttaggaccagaattatttttgaaaattttcttatatataggaccggaggg 12485230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 20949218 - 20949067
Alignment:
Q  3 aatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttt 102  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||||||||   ||||||||| |||||| | ||||||||| |||| || |||| || ||    
T  20949218 aatatttttacaaatataccctcataaaaaattgtgaaacattaaatacacatactaatattcaaaagagagacattaaat-agggataaaaaaatcatt 20949120  T
Q  103 taaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    ||| ||||||||||| ||||||| || ||| |||||||||||||||| |||||    
T  20949119 taagcaataactacaccttaaaagttatgacattttcttataaatagaaccaa 20949067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 46341631 - 46341502
Alignment:
Q  15 aatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataact 114  Q
    ||||||||||| |||||| || |||||||||||||||| | |||| ||| ||||| | ||||| |||||||| |||| | ||||||||||| ||||||||    
T  46341631 aatataccctcgtaaaaagttgtgaagcattaaatacacccactattatcaaaaacaaaaacaataaataagtggtagagaagtcttttaagcaataact 46341532  T
Q  115 acatcttaaaaattgtgatattttcttata 144  Q
    ||| ||||||| ||||||||||||||||||    
T  46341531 acaccttaaaagttgtgatattttcttata 46341502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 37048663 - 37048576
Alignment:
Q  61 tattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||  |||||| ||||||||||||||||||||||    
T  37048663 tattaaaaagataaacattaaataaagggtagaaaagtcttttaaacaatcactacactttaaaagttgtgatattttcttataaata 37048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 46101254 - 46101366
Alignment:
Q  43 attaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttctta 142  Q
    ||||| |||||| ||||||||||||| ||||| |||||||| ||||||| ||||||||||| |  |||||||||| ||||||| || ||| |||||||||    
T  46101254 attaagtacatccactaatattaaaatgacaatcattaaatgaggggtagaaaagtcttttgagtaataactacaacttaaaagttatgacattttctta 46101353  T
Q  143 taaataggaccaa 155  Q
    |||||| ||||||    
T  46101354 taaataagaccaa 46101366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 42935547 - 42935403
Alignment:
Q  56 actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    ||||||| | ||||||| |||||||||| ||   || |||| ||||||||||||||| |  |||| |||| ||||||  ||||||||||||||| |||||    
T  42935547 actaatactgaaaagaccaacattaaatgagaattagaaaaatcttttaaacaataaatgtatctcaaaagttgtgactttttcttataaatagaaccaa 42935448  T
Q  156 caaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
     |||  |||||||||||||||||||| || ||||| |||||||||    
T  42935447 aaaaaattttgaaaattttcttatatataagaccggagggagtat 42935403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 2195914 - 2195805
Alignment:
Q  42 cattaaatacatcgactaatattaaaaagacaaa--cattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttc 139  Q
    ||||||||||||| | |||||||||||| | |||  |||||||| | | ||| ||||||||||||||||||||||||| ||||||| || ||||||||||    
T  2195914 cattaaatacatctattaatattaaaaaaaaaaatacattaaatgaagagtagaaaagtcttttaaacaataactacaccttaaaagttatgatattttc 2195815  T
Q  140 ttataaatag 149  Q
    ||||| ||||    
T  2195814 ttatatatag 2195805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 10599758 - 10599901
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||||||||||||  || ||||| |||||||| |   |||| ||||||||||| ||||||||||| | || || |||||| ||| |||||    
T  10599758 tttacaaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgaaggttagaaaagtttttcaaaca 10599857  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggac 152  Q
    |||| |  | || |||| ||||||  ||||||||||||||||||    
T  10599858 ataaatgtacctcaaaagttgtgactttttcttataaataggac 10599901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 14568497 - 14568351
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||| |  || ||| || ||||| ||| |||| | | |||||| || |||||| ||||||||||| |||| || ||||||||||||||||    
T  14568497 tttacaaatataccgtattataaatttttgaagtattcaatatacccactaattttgaaaagagaaacattaaatgagggttagaaaagtcttttaaaca 14568398  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    |||| || ||||||||| |||  |  |||||||||| ||||||||||    
T  14568397 ataaatatatcttaaaagttgaaactttttcttatatataggaccaa 14568351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 6549069 - 6549206
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| ||||| |||||||| | |||||||||| |||| ||||||||||||| ||||   ||||||||| || |||||| | | || || |||| |||    
T  6549069 tgaatatttttactaatataccttaataaaaaattgtgaaacattaaatacatccactatctttaaaaagaaaaccattaagtgaaggataaaaaaatct 6549168  T
Q  101 tttaaacaataactacatcttaaaaattgtgatatttt 138  Q
    |||||  |||||||| | ||||||| ||||||||||||    
T  6549169 tttaagaaataactataccttaaaagttgtgatatttt 6549206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 14650110 - 14650247
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggt-ataaaagtcttttaaac 107  Q
    ||||||||||||||||| |||||  ||||||||     |||| ||| |||| |||||||| || ||||||| ||| |||  | | ||||||||||||  |    
T  14650110 tttacaaatataccctcgtaaaattttatgaag----taatatatccactagtattaaaatgataaacattgaatgaggactaaaaaaagtcttttatgc 14650205  T
Q  108 aataactacatcttaaaaattgtgatattttcttataaatag 149  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  14650206 aataaatacatcttaaaaattgtgacattttcttataaatag 14650247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 943217 - 943102
Alignment:
Q  65 aaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttt 164  Q
    |||||||||| ||||||| || | ||| ||| ||||||| ||||||||||||| || ||||||||||  ||||||||||||||| ||||||     ||||    
T  943217 aaaaagacaaccattaaaaaaagtgtagaaatgtcttttgaacaataactacacctaaaaaattgtggcattttcttataaatatgaccaaatttatttt 943118  T
Q  165 tgaaaattttcttata 180  Q
    ||||| ||||||||||    
T  943117 tgaaagttttcttata 943102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 14658782 - 14658855
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaa 82  Q
    ||||||||||||||||||||||||  ||||||| ||||||||  || |||| ||||||||||| ||||||||||    
T  14658782 tttacaaatataccctcataaaaacatatgaagtattaaatatttccactagtattaaaaagataaacattaaa 14658855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 6549222 - 6549280
Alignment:
Q  122 aaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttata 180  Q
    |||| |||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  6549222 aaaagttgtgatattttcttataaataggaccaaatttttttttgaaaattttcttata 6549280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 508550 - 508464
Alignment:
Q  61 tattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    ||||||||||||||| |||||||||| | ||  ||| | |||||| |||||||| || |||||||||||||| |||||||| ||||||    
T  508550 tattaaaaagacaaatattaaataagagatacgaaatt-ttttaagcaataacttcaccttaaaaattgtgaaattttcttctaaata 508464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 43051504 - 43051415
Alignment:
Q  90 tataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatt 182  Q
    |||| |||||||| || ||||||||||| |||||||||||||| ||||  ||| ||||||||||||  |  |||||||||||||| |||||||    
T  43051504 tatagaagtctttgaatcaataactacaccttaaaaattgtgacattt--tta-aaataggaccaaatatatttttgaaaattttattatatt 43051415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 18145915 - 18145807
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||||  ||| ||| || | ||  |||||||||||| ||||||||||||| || || |||||||| |   ||| |||| |||||||||||    
T  18145915 tttacaaatatacccgtatagaaagttgtaaaatattaaatacatccactaatattaaaatgataatcattaaatgaaaagtagaaaaatcttttaaaca 18145816  T
Q  109 ataactaca 117  Q
    |||| ||||    
T  18145815 ataattaca 18145807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 34470206 - 34470086
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| ||||||||||||  | | || |||||| ||||  ||||||||||   |||||||||||||||| || |||||||  |||| || |||| |||    
T  34470206 tgaatatttttacaaatataaacacttacaaaattgtgaaatattaaatacactcactaatattaaaaagagaagcattaaacgagggataaaaaattct 34470107  T
Q  101 tttaaacaataactacatctt 121  Q
    |||||  ||||| ||||||||    
T  34470106 tttaagtaataagtacatctt 34470086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 45072518 - 45072570
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacat 53  Q
    ||||||| |||| |||||||| ||||||||||| | |||||||||||||||||    
T  45072518 tgaatatttttataaatatactctcataaaaaactgtgaagcattaaatacat 45072570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 2122497 - 2122418
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacatta 80  Q
    ||||||| |||||||||| | | || |||| || | | ||||||||||||||   |||||||||||||||||||||||||    
T  2122497 tgaatatttttacaaatacagcatcgtaaacaaatgttaagcattaaatacactcactaatattaaaaagacaaacatta 2122418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 15033312 - 15033413
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    ||||||||||||| || ||||||| |||||||  ||| |||| |   ||||||||| |||||||||| ||||||  || | || ||||||||||||||||    
T  15033312 tttacaaatatactctaataaaaatttatgaattattgaatatactcactaatattgaaaagacaaatattaaacgagagcta-aaaagtcttttaaaca 15033410  T
Q  109 ata 111  Q
    |||    
T  15033411 ata 15033413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 35333373 - 35333328
Alignment:
Q  59 aatattaaaaagacaaacattaaataaggggtataaaagtctttta 104  Q
    ||||||||||||||||||||||||| |||| || |||| |||||||    
T  35333373 aatattaaaaagacaaacattaaatgagggttaaaaaaatctttta 35333328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 9183282 - 9183382
Alignment:
Q  46 aaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataa 145  Q
    ||||||| | ||||| || ||||||| || |||||||| | || || ||| ||||| ||| ||||||||| | |||||||  ||||| ||||||||||||    
T  9183282 aaatacacccactaagatcaaaaagagaatcattaaatgaaggataaaaatgtcttctaagcaataactataccttaaaagatgtgacattttcttataa 9183381  T
Q  146 a 146  Q
    |    
T  9183382 a 9183382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 15028844 - 15028788
Alignment:
Q  13 caaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaa 69  Q
    ||||||||||||||| ||||||| |||  ||||||||  ||| ||||||||||||||    
T  15028844 caaatataccctcatgaaaaattgtgatacattaaatgtatccactaatattaaaaa 15028788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 17205159 - 17205123
Alignment:
Q  119 cttaaaaattgtgatattttcttataaataggaccaa 155  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  17205159 cttaaaagttgtgacattttcttataaataggaccaa 17205123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 31659000 - 31658811
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||||||| || || ||||||||    
T  31659000 tgaatatttttacaaatatatcctcataaaaa-ttatgcagcattaaatacatccactagtattaaaaagacaaacattaaataaaggttaaaaaagtct 31658902  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaa-attttttgaaaattttcttatatttaggaccg 190  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||| ||||||||||||||| || |||||    
T  31658901 tttaaacaataactacatcttaaaagttgtgatattttcttataaatagaaccaacaattttttttaaaaattttcttatatataagaccg 31658811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 36054956 - 36054778
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||| ||||||||||| || |||||||  |||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36054956 tttataaatatacccttattaaaaattgggaagtattaaatacatccactaatattaaaaagacaaacattaattaaggggtataaaagtcttttaaaca 36054857  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttagga 187  Q
    |||| || | ||||||| |||||| |||||||||||||||||||||| || | |||||||||||||||||||| |||||    
T  36054856 ataaatataccttaaaagttgtgacattttcttataaataggaccaaaaattattttgaaaattttcttatatatagga 36054778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 8251384 - 8251204
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||| |   ||||||||||||||||||| |||||||||| ||| | ||| ||||    
T  8251384 tgaatatttttacaaatataccctcataaaaaattgtgaagcattaaataaactcactaatattaaaaagacaaccattaaataatggggaaaaaggtct 8251285  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatat 181  Q
    ||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||  | |||||| |||||||||||||||    
T  8251284 tttaagcaataattacaccttaaaagttgtgatattttcttataaataggaccaaatattttttttaaaattttcttatat 8251204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 2207918 - 2207766
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||||||||||||||| || |||||||||||||||| | | |||||||||||| ||||||||||||||||||||| |||| |||    
T  2207918 tgaatatttttacaaatataccctcataaaaa-ttgtgaagcattaaatacacccattaatattaaaaatacaaacattaaataaggggtagaaaattct 2207820  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    || |  |||||||| |||||||||||||||||||||||| |||||||||||||||    
T  2207819 ttaacgcaataactgcatcttaaaaattgtgatattttc-tataaataggaccaa 2207766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 16890268 - 16890451
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatatt---aaaaagacaaacattaaataaggggtataaaag 97  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||||| |   |||||||||   ||||| ||||||| ||||||| ||||| |||||    
T  16890268 tgaatatttttacaaatataccctcataaaaaattgtgaaacattaaataaactcactaatatttataaaaaaacaaacaataaataaagggtagaaaag 16890367  T
Q  98 tcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatat 181  Q
    ||||| ||||| |||||| | ||||||| ||||||||||||| ||||||||||||||| |   ||||||||| |||||||||||    
T  16890368 tctttgaaacactaactataccttaaaagttgtgatattttcatataaataggaccaatatcatttttgaaatttttcttatat 16890451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 2152469 - 2152312
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaataca-tcgactaatatt-aaaaagacaaacattaaataaggggtataaaagt 98  Q
    ||||||| |||| ||||||||||| |||||||||| |||||||||||||| | ||| |||||||| ||||||| ||||||||||||||||||| ||||||    
T  2152469 tgaatatttttataaatatacccttataaaaaattgtgaagcattaaatagactcg-ctaatattaaaaaagataaacattaaataaggggtagaaaagt 2152371  T
Q  99 cttttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaat 160  Q
    |||||||  |||||| ||| ||||||||||||||||||||||  ||||||||||||| ||||    
T  2152370 cttttaagtaataac-acaccttaaaaattgtgatattttct--taaataggaccaaaaaat 2152312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 1445493 - 1445349
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||| |||| ||||||| |||| |||||||||||   ||||||||  |||||| ||||||||||| |||| || ||||||| ||||| ||    
T  1445493 tttacaaatataccttcattaaaaattgtgaaacattaaatacactcactaatatctaaaagagaaacattaaat-agggatagaaaagtcatttaagca 1445395  T
Q  109 ataac-tacatcttaaaaattgtgatattttcttataaataggacc 153  Q
    ||||| |||| ||||||| |||||| ||||||||||||||||||||    
T  1445394 ataacttacaccttaaaagttgtgacattttcttataaataggacc 1445349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 38209521 - 38209711
Alignment:
Q  3 aatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttt 102  Q
    ||||| |||| |||||||||||  |||||| || ||||| ||| |||| | | ||||||||| ||||||| |||||||||| |||| || | ||||||||    
T  38209521 aatatttttataaatatacccttttaaaaatttgtgaagtatttaatatacccactaatattgaaaagaccaacattaaatgagggttagagaagtcttt 38209620  T
Q  103 taaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaaggg 195  Q
    |||||||||| |  | ||||||| ||||||  |||||||||||||| |||||  || ||||||  |||||||||||||| |||||||| ||||    
T  38209621 taaacaataaatgtaccttaaaagttgtgactttttcttataaatatgacca--aatttttttttaaattttcttatatataggaccggaggg 38209711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 40694331 - 40694232
Alignment:
Q  50 acatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaatag 149  Q
    ||||| ||| ||||||||| |||||||| || |||||||||| ||||||||||||| |||||| |||| || |||| |||||||||||||||||||||||    
T  40694331 acatccactgatattaaaatgacaaacactatataaggggtagaaaagtcttttaagcaataattacacctaaaaagttgtgatattttcttataaatag 40694232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 11778129 - 11778032
Alignment:
Q  58 taatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||   ||||  |||||||||||||||||||  ||||||||||||||| |||||    
T  11778129 taatattaaaaagacaaacattaaataagggttaagaaagtcttttacgaaatagatacatcttaaaaattgtgaccttttcttataaatagaaccaa 11778032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 30112485 - 30112578
Alignment:
Q  61 tattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggacca 154  Q
    ||||||||||||| ||||||||  |||| || |||| |||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||    
T  30112485 tattaaaaagacatacattaaacgagggataaaaaaatcttttaagcaataactacaccttaaaatttgtgacattttcttataaataggacca 30112578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 36408193 - 36408364
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||||||||||||| || | ||| ||||| || ||| |||||||||||||||||||||||||||  |||| || |||||| | |||||||    
T  36408193 tttacaaatataccctcataaaaatttgttaagtattaattatatccactaatattaaaaagacaaacattaaacgagggttaaaaaagtttgttaaaca 36408292  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggacc-aacaaattttttgaaaattttcttata 180  Q
    |||| |  | ||| ||| ||||||  |||||||||| ||| |||| ||    |||||||||||||||||||||    
T  36408293 ataaatgtacctt-aaagttgtgactttttcttatatataagaccaaagtttttttttgaaaattttcttata 36408364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 2520133 - 2520277
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||| |||||||||||||| |||| ||||||||||    | ||||||| |||| |  ||||||||||  | |||| ||| ||||    
T  2520133 tgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatactctcaataatatttaaaaaaggaacattaaatg-gaggtagaaa-gtct 2520230  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaat 147  Q
     |||| ||||||||||||||||||| |||||| ||||||||||||||    
T  2520231 cttaagcaataactacatcttaaaatttgtgacattttcttataaat 2520277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 40696612 - 40696704
Alignment:
Q  56 actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaatag 149  Q
    ||||||||||||| |||||||| || ||||||| || |||||||||||||  ||||| ||||||| |||| |||||||||||||||||||||||    
T  40696612 actaatattaaaatgacaaacactatataaggg-tagaaaagtcttttaaggaataattacatctaaaaagttgtgatattttcttataaatag 40696704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 30870743 - 30870919
Alignment:
Q  3 aatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttt 102  Q
    ||||| || ||||||||||||| |||||||||| |||| ||||||||| ||| ||||||||||||| |||||||| | |||   || || ||||| | ||    
T  30870743 aatattttgacaaatatacccttataaaaaattgtgaaacattaaatatatccactaatattaaaatgacaaacaat-aatggtggataaaaaagccatt 30870841  T
Q  103 taaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttata 180  Q
    || | || ||||||| |||||||| | ||| ||| || ||||||||| ||||| |  || ||||||||| ||||||||    
T  30870842 tagataaaaactacaccttaaaaagtatgacattatcatataaatagaaccaaaattttgtttgaaaatcttcttata 30870919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 43837058 - 43836938
Alignment:
Q  25 cataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaa 124  Q
    |||||||| ||||||||||||||||||||| | |||||| ||||| | |||||| ||| | |||| | |||| |||||||   | ||| |||| ||||||    
T  43837058 cataaaaagttatgaagcattaaatacatctattaatataaaaaacaaaaacataaaaaatggggcagaaaaatcttttacgtactaattacaccttaaa 43836959  T
Q  125 aattgtgatattttcttataa 145  Q
    |||||| ||||||||||||||    
T  43836958 aattgtaatattttcttataa 43836938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 40314361 - 40314274
Alignment:
Q  3 aatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggt 90  Q
    ||||| |||||||||||| | ||||||||||||||||| ||||||||||||| || ||||||  ||| | || |||||||||||||||    
T  40314361 aatatttttacaaatatatcttcataaaaaattatgaaacattaaatacatctacaaatattttaaaaagaagcattaaataaggggt 40314274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 30653639 - 30653705
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaa 75  Q
    |||||||||||||||||||||||| || |||| |||||||||||   |||| |||||||||||||||    
T  30653639 tttacaaatataccctcataaaaatttgtgaaacattaaatacacaaactagtattaaaaagacaaa 30653705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 29917099 - 29916963
Alignment:
Q  14 aaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataac 113  Q
    ||||||||||| | |||||| | ||||||||||||||||   |||||||||||||| | ||  ||||||| || | || ||| || ||||||  |||||     
T  29917099 aaatataccctta-aaaaaactgtgaagcattaaatacactcactaatattaaaaaaagaagtattaaatgagagatagaaatgttttttaagtaataat 29917001  T
Q  114 tacatcttaaaaattgtgatattttcttataaatagga 151  Q
    ||||| |||||| |||| | ||||| ||||||||||||    
T  29917000 tacattttaaaagttgtaacatttttttataaatagga 29916963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 35431633 - 35431553
Alignment:
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatt 182  Q
    |||||||||| |||| |  |||||| |||||| ||||||||||||||||||||||    | |||||||||||||||||||||    
T  35431633 tttaaacaatgactataatttaaaagttgtgacattttcttataaataggaccaa-ttttattttgaaaattttcttatatt 35431553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 27518600 - 27518532
Alignment:
Q  14 aaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaa 82  Q
    |||||| |||||||||||| || |||   ||||||| |||| |||||||||||||||||||| ||||||    
T  27518600 aaatatgccctcataaaaagttgtgatatattaaatgcatccactaatattaaaaagacaaaaattaaa 27518532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 30654260 - 30654312
Alignment:
Q  99 cttttaaacaataactacatcttaaaaattgtgatattttcttataaatagga 151  Q
    ||||||| |||||||||||  |||||| |||||||||||||||||| ||||||    
T  30654260 cttttaagcaataactacactttaaaagttgtgatattttcttatatatagga 30654312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 21504884 - 21504935
Alignment:
Q  104 aaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    ||||||||| |||||||||||| |||| | |||||||||||||| |||||||    
T  21504884 aaacaataaatacatcttaaaagttgtaacattttcttataaattggaccaa 21504935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 36204128 - 36204183
Alignment:
Q  93 aaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    |||||| ||||||||||| |||| || ||||||||||||| ||||| |||||||||    
T  36204128 aaaagtattttaaacaatgactatattttaaaaattgtgacatttttttataaata 36204183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 11388093 - 11388154
Alignment:
Q  93 aaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggacca 154  Q
    |||| ||||||| | |||||||||| |||||||||||||  ||||||||| |||| ||||||    
T  11388093 aaaaatcttttatataataactacaacttaaaaattgtgtcattttcttaaaaattggacca 11388154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 5923911 - 5923879
Alignment:
Q  56 actaatattaaaaagacaaacattaaataaggg 88  Q
    |||||||||||||||||||||||||||| ||||    
T  5923911 actaatattaaaaagacaaacattaaatgaggg 5923879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 38496621 - 38496421
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||||||| |||||||  |  ||| ||||||||||| | |||||||||||||| |||||| |||||||||||||| ||| ||||    
T  38496621 tgaatatttttacaaatataccctgataaaaatgtgcgaaacattaaatacacctactaatattaaaaatacaaacgttaaataaggggtagaaaggtct 38496522  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    ||||||||||||||| | |||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| || |||||||||    
T  38496521 tttaaacaataactataccttaaaaattctgacattttcttataaataggactaacatattttttgaaaattttcttatatataggatcggagggagtat 38496422  T
Q  201 a 201  Q
    |    
T  38496421 a 38496421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 3269505 - 3269306
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||||||| ||||||| || |||||| ||||||||| | | |||||||||||| | ||||||||||||||||||| ||||||||    
T  3269505 tgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaagtct 3269406  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    ||||  ||||||||||| ||||||| ||||||||||||||||||| | |||||||  | |||||||||||||||||||||| ||||| || |||||||||    
T  3269405 tttaggcaataactacaccttaaaagttgtgatattttcttataatttggaccaaagatttttttgaaaattttcttatatataggaacggagggagtat 3269306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 3270064 - 3269865
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||||||| ||||||| || |||||| ||||||||| | | |||||||||||| | ||||||||||||||||||| ||||||||    
T  3270064 tgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaagtct 3269965  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    ||||  ||||||||||| ||||||| ||||||||||||||||||| | |||||||  | |||||||||||||||||||||| ||||| || |||||||||    
T  3269964 tttaggcaataactacaccttaaaagttgtgatattttcttataatttggaccaaagatttttttgaaaattttcttatatataggaacggagggagtat 3269865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 3268946 - 3268767
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||||||| ||||||| || |||||| ||||||||| | | |||||||||||| | ||||||||||||||||||| ||||||||    
T  3268946 tgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaagtct 3268847  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttata 180  Q
    ||||  ||||||||||| ||||||| ||||||||||||||||||| | |||||||  | |||||||||||||||||||||    
T  3268846 tttaggcaataactacaccttaaaagttgtgatattttcttataatttggaccaaagatttttttgaaaattttcttata 3268767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 40504023 - 40503869
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||| ||||||||||||||||| || ||||||||||||| || | |||||||||||||||||||||| |||||||||||||||||||| |    
T  40504023 tgaatatttttacagatataccctcataaaaagttgtgaagcattaaatgcacctactaatattaaaaagacaaacaataaataaggggtataaaagttt 40503924  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    |||||||||||| |||| ||||||| |||||| |||||||||||||| |||||||    
T  40503923 tttaaacaataattacaccttaaaagttgtgacattttcttataaatgggaccaa 40503869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 38214261 - 38214061
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||| |||||||||||||| |||| |||||||||||   |||||||||||||||| ||  ||||||| |||| |||||||||||    
T  38214261 tgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatacacatactaatattaaaaagagaagtattaaatgagggatataaaagtct 38214162  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaaca-aattttttgaaaattttcttatatttaggaccgaagggagta 199  Q
    |||||||||||| |||| ||||||| ||||||  ||||||||||||| ||||||| |   |||||||||| |||||||||| | ||||||||||||||||    
T  38214161 tttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggaccaaaatttttttttgaaatttttcttataataaggaccgaagggagta 38214062  T
Q  200 t 200  Q
    |    
T  38214061 t 38214061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 40442866 - 40442668
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||| | ||||||||| ||||||| || ||||||||||||| || | |||||||||||||||| ||||| |||||||||||||||||||| |    
T  40442866 tgaatatttttatagatatacccttataaaaagttgtgaagcattaaatgcacctactaatattaaaaagataaacaataaataaggggtataaaagttt 40442767  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagta 199  Q
    |||||||||||| |||| ||||||| |||||| |||||||||||||||||| ||| |||   |||||||| |||||| ||| |||||||| || |||||    
T  40442766 tttaaacaataattacaccttaaaagttgtgacattttcttataaataggatcaaaaaaaaatttgaaaaatttcttttatataggaccggagagagta 40442668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 39063594 - 39063793
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||| |||||||||||||| |||| |||||||||||   |||||||||||||||| ||  ||||||| ||   |||||||||||    
T  39063594 tgaatatttttacaaatataacctcataaaaaattgtgaaacattaaatacacacactaatattaaaaagagaagtattaaatgagcaatataaaagtct 39063693  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa-caaattttttgaaaattttcttatatttaggaccgaagggagta 199  Q
    |||||||||||| |||| ||||||| ||||||  ||||||||||||| |||||||    ||||||| |||||||||||||| | ||||||| ||||||||    
T  39063694 tttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggaccaattttatttttttaaaattttcttataataaggaccggagggagta 39063793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 19286020 - 19285829
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||| ||  ||| ||| || |||| ||||||||||||  ||||||||| |||||||||| ||||||| | || |||||||||||||||  ||    
T  19286020 tttacaaatatatccctatagaaagttgtgaaccattaaatacattcactaatattgaaaagacaaatattaaatgaaggatataaaagtcttttatgca 19285921  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    ||||||||| ||||||| |||||| | || |||||||||||||||||    ||||||||||||||||||||| | |||| || |||||||||    
T  19285920 ataactacaccttaaaacttgtgacaattacttataaataggaccaaatttttttttgaaaattttcttataataaggatcggagggagtat 19285829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 4015801 - 4015987
Alignment:
Q  14 aaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataac 113  Q
    |||||||||||| | |||||||||||| |||||||| || | |||||||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||    
T  4015801 aaatataccctcgttaaaaattatgaaacattaaatgcacctactaatattacaaagacaaacattaactaaggggtagaaaagtcttttaaacattaac 4015900  T
Q  114 tacatcttaaaaattgtgatattttcttataaataggaccaacaaatttt--ttgaaaattttcttatatttaggaccgaagggagta 199  Q
    || ||||| | | ||||||  |||||||||||||| | ||||    ||||  |||||||||| ||||||| |||||||| ||||||||    
T  4015901 tatatctt-agagttgtgactttttcttataaatatgcccaatttttttttgttgaaaatttccttatatataggaccggagggagta 4015987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 16781399 - 16781256
Alignment:
Q  11 tacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaat 110  Q
    ||||||||||||||||| ||||||  |||| ||||||||||| | |||||||||| ||||||||||||||| ||||| ||| |||||||||||||||| |    
T  16781399 tacaaatataccctcattaaaaatggtgaaacattaaatacacctactaatattacaaagacaaacattaactaaggcgtagaaaagtcttttaaacatt 16781300  T
Q  111 aactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    || || | ||| ||| ||||||  |||||||||||||| ||||||    
T  16781299 aattatacctt-aaagttgtgactttttcttataaatatgaccaa 16781256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 32872481 - 32872378
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    ||||||||||||||||||||||||||| ||||| |||||||| | | ||||||||||||| |||||||||||||| |||| |  ||||||||||||||||    
T  32872481 tttacaaatataccctcataaaaaattgtgaagtattaaatatacccactaatattaaaaggacaaacattaaattagggttggaaaagtcttttaaaca 32872382  T
Q  109 ataa 112  Q
    ||||    
T  32872381 ataa 32872378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 7011231 - 7011043
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    ||||||||||||| |||||||||| || ||||| |||||||| | | ||||||||| |||||| |    |||||| |||| || ||||||||||||||||    
T  7011231 tttacaaatatactctcataaaaatttgtgaagtattaaatatacccactaatattgaaaagata----ttaaatgagggttagaaaagtcttttaaaca 7011136  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaa-caaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    |||| |  ||||||||||||||||  ||||||||||||||| | |||   | |||||| ||||||||||||||  |||||||| | |||||||    
T  7011135 ataaatgtatcttaaaaattgtgactttttcttataaatagaatcaatttattttttttaaaattttcttataaataggaccggatggagtat 7011043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 31405093 - 31404982
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||| ||||||| ||| |||||||| |||||||| ||  |||||||||||||||||||| ||||||| |||| || ||||||||    
T  31405093 tgaatatttttacaaatatatcctcatagaaatttatgaagtattaaatatatgcactaatattaaaaagacaaatattaaatgagggttagaaaagtct 31404994  T
Q  101 tttaaacaataa 112  Q
    |||||| |||||    
T  31404993 tttaaaaaataa 31404982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 14200375 - 14200516
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||||||||||||| || ||||| |||||||| |   ||||||||| ||||||  |||||||||| |||| || |||||||||||||| |    
T  14200375 tttacaaatataccctcataaaaatttgtgaagtattaaatatactcactaatattgaaaagatcaacattaaatgagggttaaaaaagtcttttaaata 14200474  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaatagga 151  Q
    |||| |  ||||||||| ||||||  |||||||||||||||||    
T  14200475 ataaatgtatcttaaaagttgtga-cttttcttataaatagga 14200516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 40664383 - 40664191
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaa-gacaaacattaaataaggggtataaaagtc 99  Q
    |||||||  |||||||||||||||| ||||||||| |||| |||||||||||   || ||| ||||||| || || |||||||| |||| ||||||||||    
T  40664383 tgaatattcttacaaatataccctcgtaaaaaattgtgaaacattaaatacacacaccaatgttaaaaaagagaagcattaaatgagggatataaaagtc 40664284  T
Q  100 ttttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa--caaattttttgaaaattttcttatatttaggaccg 190  Q
    ||||||| ||||| ||||  |||| | |||||| |||||||||| ||| |||||||      ||||||||||||||||||||| | |||||||    
T  40664283 ttttaaataataaatacactttaagagttgtgaaattttcttatcaattggaccaattttttttttttgaaaattttcttataataaggaccg 40664191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 31365049 - 31365218
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    ||||||||||||| || ||| ||  || ||||  |||||||||||| |||||||||||||| | || | |||||| ||   || |||||| ||||||       
T  31365049 tttacaaatatacacttatagaatgttgtgaaatattaaatacatccactaatattaaaaaaagaacctttaaatgagatatagaaaagttttttaagtc 31365148  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttctta 178  Q
    |||||| || |||||||||||||| |||| |||||||| | |||||| | ||||||||||||||||||||    
T  31365149 ataactccaccttaaaaattgtgacatttccttataaacatgaccaaaatattttttgaaaattttctta 31365218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 3711912 - 3711991
Alignment:
Q  75 acattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    |||||||||||| | || |||||||||||||||||||||||   ||||||| |||||| |||||||||||||||| |||||    
T  3711912 acattaaataagcgataaaaaagtcttttaaacaataacta-tccttaaaagttgtgacattttcttataaatagaaccaa 3711991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 34262802 - 34262746
Alignment:
Q  56 actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataa 112  Q
    |||||||||||||||||||||||||| | |||| || ||||||||||||||||||||    
T  34262802 actaatattaaaaagacaaacattaattgagggttagaaaagtcttttaaacaataa 34262746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 35310899 - 35310800
Alignment:
Q  56 actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgt-gatattttcttataaataggacca 154  Q
    ||||||||| ||| ||||||||||||||||||| || ||||  |||||||||||||| || ||||||||| | || ||| ||||||||||||||| ||||    
T  35310899 actaatatttaaaggacaaacattaaataagggcta-aaaaaccttttaaacaataaatatatcttaaaagtagtggattttttcttataaatagaacca 35310801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 21794985 - 21794914
Alignment:
Q  1 tgaatatgtttacaaatataccctcataa-aaaattatgaagcattaaatacatcgactaatattaaaaaga 71  Q
    ||||||| ||||||||||||||||||||| |||||| |||| |||||||||||   ||||||||||||||||    
T  21794985 tgaatatttttacaaatataccctcataaaaaaattgtgaaacattaaatacacacactaatattaaaaaga 21794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 45723926 - 45724028
Alignment:
Q  10 ttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataagggg-tataaaagtcttttaaaca 108  Q
    ||||||||||| | ||||||||| |||| ||| |||||||| | | ||||||||| ||||||| || ||||||| ||||| || |||| |||||||||||    
T  45723926 ttacaaatatatcttcataaaaatttataaagtattaaatatacctactaatattgaaaagaccaatattaaatgaggggctaaaaaaatcttttaaaca 45724025  T
Q  109 ata 111  Q
    |||    
T  45724026 ata 45724028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 16268448 - 16268375
Alignment:
Q  65 aaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatatttt 138  Q
    |||||||||||||| |||||| || || |||||| |||| ||||||||| | ||||||||| ||||||||||||    
T  16268448 aaaaagacaaacataaaataaaggttagaaaagtattttgaacaataacaatatcttaaaagttgtgatatttt 16268375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 21794907 - 21794804
Alignment:
Q  98 tcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggacc-aacaaattttttgaaaattttcttatatttaggaccgaaggga 196  Q
    ||||||||||||| | |||| ||||||| ||||||  ||||||||||||| ||||| ||    ||||||||||||||||||||  | |||||| ||||||    
T  21794907 tcttttaaacaattaatacaccttaaaagttgtgaatttttcttataaattggaccaaattttttttttgaaaattttcttatgataaggacctaaggga 21794808  T
Q  197 gtat 200  Q
    ||||    
T  21794807 gtat 21794804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 17368928 - 17368974
Alignment:
Q  58 taatattaaaaagacaaacattaaataaggggtataaaagtctttta 104  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||    
T  17368928 taatattaaaaagacaaacattaaataaggactaaaaaagtctttta 17368974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 21229584 - 21229486
Alignment:
Q  57 ctaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaa--ttgtgatattttcttataaataggacca 154  Q
    ||||||||||||||||| | ||||||  ||||||| ||||||||||| ||  ||||||||| ||||||||  ||||||   |||||||||||||| ||||    
T  21229584 ctaatattaaaaagacacatattaaacgaggggtagaaaagtctttt-aagtataactacaccttaaaaaagttgtgacgatttcttataaatagtacca 21229486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 28650239 - 28650323
Alignment:
Q  46 aaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgt 130  Q
    ||||||| | |||||||||||||||| || |||||||| |    || |||||||||||||| |||||||||| ||||||| ||||    
T  28650239 aaatacacctactaatattaaaaagagaagcattaaattaaatatagaaaagtcttttaaataataactacaccttaaaagttgt 28650323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 23960074 - 23959979
Alignment:
Q  105 aacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    |||| |||||||| |||||||||| ||| ||||||||||||| |||| ||| |  |||||| |||| |||||||| || | ||||| || ||||||    
T  23960074 aacagtaactacaccttaaaaattatgacattttcttataaaaaggagcaaaactttttttaaaaaatttcttatcttaatgaccggagagagtat 23959979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 44883267 - 44883310
Alignment:
Q  105 aacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    |||||||| || | ||||||||||||||||||||||||||||||    
T  44883267 aacaataaatataccttaaaaattgtgatattttcttataaata 44883310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 34309352 - 34309310
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatac 51  Q
    |||||||||||||||||||||||| || ||||| |||||||||    
T  34309352 tttacaaatataccctcataaaaatttgtgaagtattaaatac 34309310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 2761599 - 2761535
Alignment:
Q  93 aaaagtcttttaaacaataactacatcttaaaaattgtgatatttt--cttataaataggaccaa 155  Q
    |||||| ||||||||||||| ||||  |||||| ||||||||||||   ||||||||||||||||    
T  2761599 aaaagtattttaaacaataattacactttaaaagttgtgatatttttatttataaataggaccaa 2761535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 28401238 - 28401316
Alignment:
Q  80 aaataaggggtataaaagtcttttaaacaataacta---catcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    |||| ||||||| |||| ||||||||| ||||| ||   || |||||||||||||| ||||||||||| ||| ||||||    
T  28401238 aaatcaggggtaaaaaattcttttaaataataagtagtacaccttaaaaattgtgacattttcttatacatatgaccaa 28401316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 34195827 - 34195944
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||| | ||| ||| ||| ||||||| ||| ||||||||||||| | |||||| ||||    | ||||||||| ||||||| ||||||| |||||  |    
T  34195827 tttacacaaatatccttatagaaaattacgaaacattaaatacatccattaatatcaaaa----atacattaaatgaggggtaaaaaagtcatttaacta 34195922  T
Q  109 ataactacatcttaaaaattgt 130  Q
    ||||||| || |||||| ||||    
T  34195923 ataactatattttaaaagttgt 34195944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 44883181 - 44883241
Alignment:
Q  14 aaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaa 74  Q
    ||||||||||| ||||||| || |||| |||||||||| || |||| ||| ||||||||||    
T  44883181 aaatatacccttataaaaagttgtgaaacattaaatacttctactagtatcaaaaagacaa 44883241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 32211834 - 32211988
Alignment:
Q  46 aaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataa 145  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  32211834 aaatacacccactaatattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttataa 32211933  T
Q  146 ataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    ||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  32211934 ataagaccaacaatttttttgaaaattttcttatatataggaccggagggagtat 32211988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 45261501 - 45261313
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    ||||||||||||||||||  ||||||| |||| ||||||||||| | ||||||||| |||||| |||||||||||| ||| || ||||||| ||||| ||    
T  45261501 tttacaaatataccctca--aaaaattgtgaaacattaaatacacccactaatatttaaaagagaaacattaaata-gggatagaaaagtcatttaagca 45261405  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||| |||   |||||||||||||||||||| ||||||| |||||||||    
T  45261404 ataactacagcttaaaagttgtgacattttcttataaataggaccaaaaaaaaatttgaaaattttcttatattaaggaccggagggagtat 45261313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 40344932 - 40345129
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||||||| |||||||||| |||| |||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||||    
T  40344932 tgaatatttttacaaatatacccttataaaaaattgtgaaccattaaatac-tc-actaatattaaaaagacaaatattaaatgaggggtataaaagtct 40345029  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
     |||| |||| |||||| ||||||| |||||| ||||||||||| |||||| ||| |||    ||||| ||||||||||| | ||||||| |||| ||||    
T  40345030 cttaagcaatgactacaccttaaaagttgtgacattttcttatagataggaacaaaaaaaaaattgaacattttcttataataaggaccggagggtgtat 40345129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 46918471 - 46918648
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||||| ||| || ||| |||| ||||||||||||  | |||||||||||||||| ||||||||| | || || ||||||||||||| ||    
T  46918471 tttacaaatatacccttatagaatattttgaaacattaaatacattcattaatattaaaaagacagacattaaatgaaggataaaaaagtcttttaagca 46918570  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttagga 187  Q
    |||||||   |||||||||||||| |||||||||||||||||||||| |  |||||| |||||||||||||||| ||||    
T  46918571 ataacta-tccttaaaaattgtgacattttcttataaataggaccaaaactttttttaaaaattttcttatattaagga 46918648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 17003577 - 17003775
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||||||||||||||| || |||| ||||||| ||| | ||||||||| |||||| |||||||||||| ||| || |||||||     
T  17003577 tgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata-gggataaaaaagtca 17003674  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttctt-ataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagta 199  Q
    ||||| ||||||||||| ||||||| |||||| ||||| || |||||||||||||     ||||||||||||||||||||||| | |||||||| |||||    
T  17003675 tttaagcaataactacaccttaaaagttgtgacattttttttataaataggaccagatttttttttgaaaattttcttatattaaagaccgaagagagta 17003774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 30041314 - 30041484
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||| ||||||||||||||||| | || ||||| |||||||| | | |||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  30041314 tttataaatataccctcataaagatttgtgaagtattaaatataaccactaatattaaaaagacaaacattaattaagggttagaaaagtcttttaaaca 30041413  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttata 180  Q
    |||| || | ||| ||| |||| |  |||||| ||| || ||||||| ||| ||||||||||||||||||||    
T  30041414 ataaatatacctt-aaagttgtcactttttctaatatattggaccaaaaaaatttttgaaaattttcttata 30041484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 35455452 - 35455256
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| | |||||||||||  |||||||||||| |||| |||||||||||   ||||||||| |||  | |||||||||||| ||| || |||||||     
T  35455452 tgaatatttctacaaatatac--tcataaaaaattgtgaaacattaaatacactcactaatatttaaat-ataaacattaaata-gggatagaaaagtca 35455357  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    ||||| |||||| |||| ||||||| |||||| ||||||||||||||| ||||||    ||||||||||||||||||||||| ||||| | |||||||||    
T  35455356 tttaagcaataattacaccttaaaagttgtgacattttcttataaataagaccaattttttttttgaaaattttcttatattaaggactgtagggagtat 35455257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 43320137 - 43320310
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||| ||||| |||||||||   ||||||||||||||||  |||||      ||||||||||||| |||| ||| || ||||||||    
T  43320137 tgaatatttttacaaatacacccttataaaaaatcgcgaagcattaaatacattcactaa------aaagacaaacattgaataggggctagaaaagtct 43320230  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttata 180  Q
    ||||||||||||| ||| ||||||| |||||| ||||||||||||||||| ||||    ||||||||||||||| |||||    
T  43320231 tttaaacaataaccacaccttaaaagttgtgacattttcttataaataggtccaaacttttttttgaaaattttattata 43320310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 8825361 - 8825535
Alignment:
Q  3 aatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttt 102  Q
    ||||| |||| ||||||||||| |||||||||| || |||||||||||||   | |||||||||||  | |  |||||||| | || || ||||||||||    
T  8825361 aatatttttataaatatacccttataaaaaattgtgtagcattaaatacactcattaatattaaaataa-agtcattaaatgaaggatagaaaagtcttt 8825459  T
Q  103 taaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttata 180  Q
    ||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||    |||||||||||||||||||||    
T  8825460 taagcaataactacaccttaaaa-ttgtgacattttcttataaataggaccaa-tttttttttgaaaattttcttata 8825535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 27721439 - 27721330
Alignment:
Q  87 gggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttagg 186  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||| || || |||||||||  |||||||||||  |||    
T  27721439 gggtataaaagtcttttaaacaataacaaca-cataaaaattgtgacattttcttataaataggacaaaaaatttttttgaactttttcttatataaagg 27721341  T
Q  187 accgaagggag 197  Q
    |||| ||||||    
T  27721340 accggagggag 27721330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 18085649 - 18085729
Alignment:
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttt-tgaaaattttcttatat 181  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  18085649 tttaaataataactacaccttaaaa-ttgtgatattttcttataaataggaacaacaaatttttctgaaaattttcttatat 18085729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 25295082 - 25295198
Alignment:
Q  31 aaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgt 130  Q
    ||||| |||| |||| |||| | | |||||||||||||||| || |||||||| |||| || |||||||||||||||||||| |||| ||||||| ||||    
T  25295082 aaattgtgaaacatttaataaacccactaatattaaaaagagaagcattaaatgagggataaaaaagtcttttaaacaataattacaccttaaaagttgt 25295181  T
Q  131 gatattttcttataaat 147  Q
     | ||||||||||||||    
T  25295182 aacattttcttataaat 25295198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 49983646 - 49983561
Alignment:
Q  59 aatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttata 144  Q
    ||||||||||||||||||||||||| |||| || |||||||||||||||||||| |  ||||||||| ||||||  ||||||||||    
T  49983646 aatattaaaaagacaaacattaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaagttgtgactttttcttata 49983561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 28695694 - 28695539
Alignment:
Q  1 tgaatatgtttacaaatataccctc--ataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaa-- 96  Q
    ||||||| ||||||||||||| | |  ||||||| || |||| ||||||  |||   |||||||||||||| | |||| |||||||| ||||| ||||      
T  28695694 tgaatatttttacaaatatacacgcttataaaaagttgtgaaacattaaccacagttactaatattaaaaacaaaaacgttaaataaagggtaaaaaaaa 28695595  T
Q  97 gtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggac 152  Q
    |||||| ||| ||||||||||  |||||| ||||||||||||||||||| ||||||    
T  28695594 gtctttaaaataataactacacgttaaaatttgtgatattttcttataattaggac 28695539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 52596626 - 52596808
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaa-ttatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtc 99  Q
    ||||||| ||||| |||||||| |||||||||| || ||||| |||  ||| ||| ||||| | ||||| |||||||||||||||| ||||| |||  |     
T  52596626 tgaatatttttacgaatataccatcataaaaaaattgtgaagtatttgatatatccactaaaactaaaaggacaaacattaaataa-gggtagaaatttt 52596724  T
Q  100 ttttaaacaataactacatcttaaaaattgtgatattttcttat--aaataggaccaacaaattttttgaaaattttcttatat 181  Q
    ||||||  ||||||| || ||||||| |||| ||||||| ||||  ||||| ||||||  |||| ||| |||||||||||||||    
T  52596725 ttttaagtaataactgcaccttaaaagttgtaatatttttttataaaaataagaccaaataattcttttaaaattttcttatat 52596808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 2564478 - 2564419
Alignment:
Q  122 aaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatat 181  Q
    |||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  2564478 aaaatttgtgatattttcttataattaggaccaaaaaatattttgaaaattttcttatat 2564419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 25286165 - 25286256
Alignment:
Q  58 taatattaaaaagacaaacattaaataaggggt-ataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    |||||||||||||||||||||||||| |||||| | |||| |||||||||  ||||||| |  ||||||||| ||| |||||||||||||||    
T  25286165 taatattaaaaagacaaacattaaattaggggtaagaaaattcttttaaaatataactaaactttaaaaattttgaaattttcttataaata 25286256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 41560080 - 41559981
Alignment:
Q  56 actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    |||||||||| ||||||||||||||||| || | || ||||||||||||||  |||| |  |||||||||||| |||| |||||||||| || |||||||    
T  41560080 actaatattagaaagacaaacattaaatgagagttaaaaaagtcttttaaatcataaatgtatcttaaaaattatgattttttcttatatattggaccaa 41559981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 49983848 - 49983782
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaa 75  Q
    |||||||||||||||||||||||| || ||||| |||||||| | | ||||||||||||||||||||    
T  49983848 tttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaaa 49983782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 21698510 - 21698571
Alignment:
Q  73 aaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgata 134  Q
    |||||||||||| |||||| |||| |||||||||||||| ||||||||||||| ||||||||    
T  21698510 aaacattaaatatggggtagaaaaatcttttaaacaatatctacatcttaaaagttgtgata 21698571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 55452553 - 55452423
Alignment:
Q  29 aaaaattatgaagcattaaatacatcgactaata-ttaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataa---ctacatcttaaa 124  Q
    ||||||| |||  ||||||||||| | ||||||| ||||||||||| | ||||| | |||| || |||| |||||||| ||||||   |||||| |||||    
T  55452553 aaaaattgtgagtcattaaatacacctactaatacttaaaaagacagatattaattgagggatagaaaaatcttttaagcaataaaaactacattttaaa 55452454  T
Q  125 aattgtgatattttcttataaataggaccaa 155  Q
    | |||||| ||||||||||||||| ||||||    
T  55452453 agttgtgacattttcttataaataagaccaa 55452423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 30577928 - 30577825
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||| |||||||||    ||||| |||||||| ||| |||||| || ||||||| |||||||||| |||| || ||| |||||||||| |    
T  30577928 tttacaaatataccatcataaaaatgagtgaagtattaaatatatctactaatgttgaaaagaccaacattaaatgagggatagaaacgtcttttaaata 30577829  T
Q  109 ataa 112  Q
    ||||    
T  30577828 ataa 30577825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 36659332 - 36659210
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaac-attaaataaggggtataaaagtc 99  Q
    ||||||| ||||||| |||||||| ||||||||||||||| |||||||||||   | ||| ||||||||   |||| |||||||| ||| || |||||||    
T  36659332 tgaatatttttacaagtataccctaataaaaaattatgaaacattaaatacactcattaacattaaaaa---aaactattaaataggggataaaaaagtc 36659236  T
Q  100 ttttaaacaataactacatcttaaaa 125  Q
    | |||| || |||||||| |||||||    
T  36659235 tcttaagcagtaactacaccttaaaa 36659210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 43105155 - 43105234
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggg 88  Q
    |||||||||||||||||||||||| || ||||| || ||||| | | ||||||||| ||||||  |||||||||| ||||    
T  43105155 tttacaaatataccctcataaaaatttgtgaagtatcaaatatacccactaatattgaaaagatcaacattaaatgaggg 43105234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 48271748 - 48271901
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| | |||||||||||||||||  ||| || ||||||||||||| ||   |||||||||||||||  | |  |||||  |||| ||  || ||||    
T  48271748 tgaatatttatacaaatataccctcatggaaagttttgaagcattaaatgcacatactaatattaaaaag-gacatgttaaaggagggataggaaggtct 48271846  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    ||||| |||||| | ||| ||| || |||||| ||||||||||||||| ||||||    
T  48271847 tttaagcaataatttcattttagaagttgtgacattttcttataaatatgaccaa 48271901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 50452368 - 50452438
Alignment:
Q  78 ttaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    ||||||||||| || |  ||||||||||||||||  || | |||||||||| |||||||||||||||||||    
T  50452368 ttaaataagggatacacgagtcttttaaacaatagttataccttaaaaattatgatattttcttataaata 50452438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 49787835 - 49787770
Alignment:
Q  58 taatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaa 123  Q
    |||| |||||| |||||||||||||  |||| ||||||||| ||||||||||||| || |||||||    
T  49787835 taattttaaaaggacaaacattaaacgagggttataaaagtattttaaacaataaatatatcttaa 49787770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 24650261 - 24650120
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||  | |||||||||| ||||  ||||||||     |||||||||||||||||||| ||||||  | || || |||||| |||| ||||    
T  24650261 tttacaaatatacttttataaaaaattgtgaaatattaaatatgctcactaatattaaaaagacaaaaattaaaagaaggttaaaaaagtttttttaaca 24650162  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggac 152  Q
    |||| || | ||||||| ||||   ||||| |||||||||||||    
T  24650161 ataaatataccttaaaagttgt--aatttttttataaataggac 24650120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 22923776 - 22923709
Alignment:
Q  4 atatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaaga 71  Q
    |||| |||||||||||||| ||||||||| || ||| | |||||||| | | ||||||||||||||||    
T  22923776 atatttttacaaatataccttcataaaaatttgtgatgtattaaatatacctactaatattaaaaaga 22923709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 42279238 - 42279285
Alignment:
Q  3 aatatgtttacaaatataccctcataaaaaattatgaagcattaaata 50  Q
    ||||| |||||||||||||||||||||||| |||||||  ||||||||    
T  42279238 aatatttttacaaatataccctcataaaaatttatgaaatattaaata 42279285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 43105935 - 43106004
Alignment:
Q  78 ttaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    |||||| |||| || |||||||||||||||||||| || | ||||||| ||||||  ||||||||||||||    
T  43105935 ttaaatgagggttagaaaagtcttttaaacaataaata-accttaaaagttgtgactttttcttataaata 43106004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 47860703 - 47860601
Alignment:
Q  46 aaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataa 145  Q
    ||||||| | ||||| |||||||||| ||  ||||||| | || || ||| |||||||||  |||||||| | |||||||  ||||| ||||||||||||    
T  47860703 aaatacacccactaagattaaaaagagaataattaaatgaaggataaaaatgtcttttaagtaataactataccttaaaagatgtgacattttcttataa 47860604  T
Q  146 ata 148  Q
    |||    
T  47860603 ata 47860601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 48799202 - 48799280
Alignment:
Q  68 aagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    ||||||| |||||||||| ||| | |||| ||||||||||||||| | || ||||||| || | |||||||||||||||||    
T  48799202 aagacaaccattaaataatggggagaaaa-tcttttaaacaataaattcaccttaaaatttat-atattttcttataaata 48799280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 154488 - 154290
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||| || ||||||||||||| | |||||||||||||||| | || |||||||||||||||||||||||||||  |||| ||| ||||    
T  154488 tgaatatttttacaaacatgccctcataaaaaactgtgaagcattaaatacacccaccaatattaaaaagacaaacattaaataaaaggtaaaaaggtct 154389  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagta 199  Q
    ||||||||||||||||| ||||||| |||| |||||||||||||||||| ||||| |||||||   ||||||| ||||||| |||||||| ||||||||    
T  154388 tttaaacaataactacaccttaaaagttgtaatattttcttataaatagaaccaaaaaattttaaaaaaatttccttatatataggaccggagggagta 154290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 36437207 - 36437398
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcg-actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaac 107  Q
    |||||||||||||||| ||| ||  || |||| |||||||||||||  |||||||||||||||||| ||||||||| |||| || ||||||||||||| |    
T  36437207 tttacaaatatacccttatagaatgttgtgaaacattaaatacatcccactaatattaaaaagacagacattaaatgagggataaaaaagtcttttaagc 36437306  T
Q  108 aataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    ||||||||   ||||||| |||||| |||||||||||||||||||||| |  ||||||||||||||||||||||| ||||||| |||||||||    
T  36437307 aataactatc-cttaaaagttgtgacattttcttataaataggaccaaaactttttttgaaaattttcttatattaaggaccggagggagtat 36437398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 17971370 - 17971560
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    ||||||||||||||||| |||||| || ||||| |||||||| |   ||||||||| ||||||| |||||||||| |||| || ||||||||||||||||    
T  17971370 tttacaaatataccctcttaaaaatttgtgaagtattaaatatacacactaatattgaaaagaccaacattaaatgagggttagaaaagtcttttaaaca 17971469  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagta 199  Q
    |||| || | ||||||| ||||||  ||||||||||||||||||||| |  |||||||||||||||||||||| |||||||  ||||||||    
T  17971470 ataaatataccttaaaagttgtgactttttcttataaataggaccaaaacgttttttgaaaattttcttatatataggaccagagggagta 17971560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 42454872 - 42455071
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||  || ||||||||||    
T  42454872 tgaatatttttataaatataccctcataaaaaattatgaagcattaaatacactcactaatattaaaaagacaaacgttaaataaaaggcataaaagtct 42454971  T
Q  101 tttaaacaataactacatcttaaaaattgtg--atattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagt 198  Q
    |||||||| | |||||| ||||||| |||||  || |||| |||||||| ||||||| |  |||||| || |||||||||||| || ||||| ||| |||    
T  42454972 tttaaacattcactacaccttaaaagttgtgacatttttttttataaattggaccaa-atttttttttaacattttcttatatataagaccggaggaagt 42455070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 28165125 - 28165316
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||||||| |||||||||| |||| ||||||||||||| || ||||||||||||| ||| | | ||| ||||||| |||| |||    
T  28165125 tgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctaccaatattaaaaagataaagacttaatgaggggtaaaaaaatct 28165224  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaatttttt--gaaaattttcttatatttaggaccg 190  Q
    ||||| ||||||||| | ||| ||| |||||| ||||| |||||||||| |||||  ||||||||   ||||||||||||||  ||||||||    
T  28165225 tttaagcaataactatacctttaaagttgtgacattttattataaatagaaccaaataattttttaaaaaaattttcttataaataggaccg 28165316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 39150189 - 39150324
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||||||||||||  || ||||||||||||||||   | |||||||||||| | ||||||||||||||||||| ||||||||||||| ||    
T  39150189 tttacaaatataccctcataaaag-ttgtgaagcattaaatacactcattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaagca 39150287  T
Q  109 ataactacatcttaaaaattgtgatattttcttataa 145  Q
    ||||||||| ||||||| | |||||||||||||||||    
T  39150288 ataactacaccttaaaagtagtgatattttcttataa 39150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 24547520 - 24547376
Alignment:
Q  56 actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaac-aataactacatcttaaaaattgtgatattttcttataaataggacca 154  Q
    ||||||||| |||||||||||||||||| | || ||||||||| ||||     |||||||||||||||||| |||||| |||||||||||||||||| ||    
T  24547520 actaatattgaaaagacaaacattaaatgaaggatataaaagtttttttttgtaataactacatcttaaaacttgtgacattttcttataaataggatca 24547421  T
Q  155 acaaattttttgaaaattttcttatatttaggaccgaagggagta 199  Q
    | ||| |||||||||||||||||||| | ||||||||||||||||    
T  24547420 aaaaaatttttgaaaattttcttataataaggaccgaagggagta 24547376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 42745683 - 42745492
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||||| ||| ||  || |||| ||||||||||||| ||||||||||||||| ||| | |||||| |||| || |||||| |||||||||    
T  42745683 tttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaaggcaatccttaaatgagggata-aaaagtattttaaaca 42745585  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtata 201  Q
    |||| || |  | ||||||||||| ||||||||||||||||||||||    |||||||||| |||||||| ||| |||| || ||||||||||    
T  42745584 ataattatacttcaaaaattgtgacattttcttataaataggaccaaatttttttttgaaatttttcttacattaaggatcggagggagtata 42745492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 11435679 - 11435520
Alignment:
Q  22 cctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatctt 121  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||||  | ||||||||| ||||||||||||| || | |||    
T  11435679 cctcataaaaaattgtgatgcattaaatacatccactaatattaaaaaaacaaacattaaataaatgatataaaagt-ttttaaacaataattatacctt 11435581  T
Q  122 aaaaattgtgatattttcttataaataggac--caacaaattttttgaaaattttcttata 180  Q
    | || |||||| |||||||||||||||| ||  |||||||    |||||||||||||||||    
T  11435580 ataagttgtgacattttcttataaatagtacaacaacaaaaaaattgaaaattttcttata 11435520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 27442380 - 27442550
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||| ||||||||||| || ||||| |||||||| | | | ||||||| ||| ||| |||||||||| |||| || ||||||||||||||||    
T  27442380 tttacaaatatatcctcataaaaatttgtgaagtattaaatatacccattaatattgaaa-gaccaacattaaatgagggttagaaaagtcttttaaaca 27442478  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttata 180  Q
     ||| || |  |||||| ||||||| |||||||||||||||||||||    |||||||||||||||||||||    
T  27442479 ctaaatatactttaaaagttgtgattttttcttataaataggaccaagtttttttttgaaaattttcttata 27442550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 31152581 - 31152431
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| ||||||||||||| ||||||||||  | |||| |||||||||| |  ||||||||||||| || ||||||||||| |||||||  |||||||    
T  31152581 tgaatatttttacaaatatacgctcataaaaa--tgtgaaacattaaatacgttcactaatattaaaa-gagaaacattaaatgaggggtagcaaagtct 31152485  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattt-tcttataaataggacc 153  Q
    ||||| ||||||| ||||||||||| ||||||||||| | ||||||||||||||    
T  31152484 tttaagcaataacgacatcttaaaagttgtgatatttcttttataaataggacc 31152431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 32715832 - 32715643
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||| ||||||||||| || ||||| |||||||| | | ||||||||| ||||||  |||||||||| |||| || ||||| ||||||||||    
T  32715832 tttacaaatatatcctcataaaaatttgtgaagtattaaatatacccactaatattgaaaagatcaacattaaatgagggctagaaaagacttttaaaca 32715733  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagta 199  Q
    |||| |  | ||||||| ||||||  |||||||||||||||||||||    |||||  |||||||| |||||| |||||||| ||||||||    
T  32715732 ataaat-gaccttaaaatttgtgactttttcttataaataggaccaaattttttttaaaaaattttgttatatataggaccggagggagta 32715643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 9851813 - 9852010
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||||| | |||||| | | |||| ||||||||| | | ||||||||| |||||| ||||||||||| |||| || ||| |||     
T  9851813 tgaatatttttacaaatatacctttataaaatactgtgaaacattaaatatacccactaatatttaaaagagaaacattaaat-agggataaaaaggtca 9851911  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtat 200  Q
    ||||| |||||||||||  |||||| |||||| |||||||||||||||||| ||| |||   ||| |||||||||||||||| | || || |||||||||    
T  9851912 tttaagcaataactacactttaaaagttgtgacattttcttataaatagga-caaaaaaaaatttaaaaattttcttatattaaagaacggagggagtat 9852010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 28470064 - 28469882
Alignment:
Q  18 ataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactaca 117  Q
    |||| ||||||||||||| |||| ||||||||||| | || |||||| |||||| ||||||||||||| || || ||||| | |||||  ||||||||||    
T  28470064 atactctcataaaaaattgtgaaacattaaatacacccacaaatatttaaaagagaaacattaaataa-ggatagaaaagacatttaagtaataactaca 28469966  T
Q  118 tcttaaaaattgtgatattttcttataaataggaccaacaaattttttg-aaaattttcttatatttaggaccgaagggagtat 200  Q
     ||||||| |||||| ||||| |||||||||||||  | |  ||||||| |||||||||||||||| || ||||||||| ||||    
T  28469965 ccttaaaatttgtgacatttttttataaataggacttaaattttttttgaaaaattttcttatattaagaaccgaagggtgtat 28469882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 17988348 - 17988434
Alignment:
Q  66 aaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggac 152  Q
    |||||| || |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||||||| ||||||    
T  17988348 aaaagagaagcattaaataaggggtaaaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttataagtaggac 17988434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 3574868 - 3574720
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgac--taatattaaaaagacaaacattaaataaggggtataaaagtcttttaaa 106  Q
    |||| |||||||| || |||||||||| ||||  |||||||||||  |   ||||||||||| || ||||||||||| ||||||| | || | |||||||    
T  3574868 tttataaatatactcttataaaaaattgtgaaatattaaatacattcaaattaatattaaaatgataaacattaaatgaggggtagacaaattttttaaa 3574769  T
Q  107 caataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    |||||||||||| | |||| |||||| ||||||||||||||||||||||    
T  3574768 caataactacatttgaaaagttgtgacattttcttataaataggaccaa 3574720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 31181051 - 31181199
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaataca-tcgactaatattaaaaagacaaa-cattaaataaggggtataaaagt 98  Q
    ||||||| ||||||| |||||||| ||| |||||| |||| ||||||||||| ||| ||||||||||||| | ||| |||||||| | | ||| ||||||    
T  31181051 tgaatatttttacaagtatacccttatagaaaattgtgaaacattaaatacactcg-ctaatattaaaaaaaaaaaacattaaatgaagtgtaaaaaagt 31181149  T
Q  99 cttttaaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    ||||||||||||||||| |  |||||| |||||| |||||||||||||||    
T  31181150 cttttaaacaataactataagttaaaagttgtgacattttcttataaata 31181199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 28723972 - 28724075
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||| ||||||||||||||||| || ||||| |||||||| | | |||||||||||||||| ||||||||| | |||| || |||||||||||||| |    
T  28723972 tttacagatataccctcataaaaatttgtgaagtattaaatataaccactaatattaaaaagataaacattaattgagggttagaaaagtcttttaaata 28724071  T
Q  109 ataa 112  Q
    ||||    
T  28724072 ataa 28724075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 25130099 - 25130026
Alignment:
Q  60 atattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgat 133  Q
    |||||||||||||| ||| |||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||    
T  25130099 atattaaaaagacagacaataaataagaggtaaaaaattcttttaaacaataactacgtcttaaaaattgtgat 25130026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 46443848 - 46443700
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| ||||||||||||||| |||||||| || |||| ||||| ||||||  ||||| |||||||||| ||  || |||| |||| || |||||| |    
T  46443848 tgaatatttttacaaatatacccacataaaaa-ttgtgaaacattatatacattcactaacattaaaaagagaactat-aaatgagggataaaaaagttt 46443751  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaatagga 151  Q
    |||||  ||||| |||| ||||||| ||||||  |||||||||||||||||    
T  46443750 tttaagtaataattacaccttaaaagttgtgacgttttcttataaatagga 46443700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 31003677 - 31003732
Alignment:
Q  98 tcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggacc 153  Q
    ||||||||||| |||||||| ||||||| |||||| ||||||||||||||||||||    
T  31003677 tcttttaaacagtaactacaccttaaaagttgtgacattttcttataaataggacc 31003732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 2619702 - 2619845
Alignment:
Q  17 tataccctcataaaaaa-ttatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataacta 115  Q
    ||||||||||||||||| || | ||||||||||| |||   ||||| || |||| ||||||||||||| ||||||| ||||   ||||||| ||||||||    
T  2619702 tataccctcataaaaaaattgtcaagcattaaatgcattctctaatgtttaaaaaacaaacattaaatgaggggtagaaaaaaattttaaataataacta 2619801  T
Q  116 catcttaaaaattgtgatattttcttataaataggaccaacaaatttttt 165  Q
    |      | | |||||||||||||||||||||| |||||| |||| ||||    
T  2619802 c------acagttgtgatattttcttataaataagaccaaaaaatatttt 2619845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 29657969 - 29658054
Alignment:
Q  56 actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttctta 142  Q
    |||||||||||||||||||| ||||||||| || |  |||||||||||| ||||||| | ||||||||||||| | | |||||||||    
T  29657969 actaatattaaaaagacaaa-attaaataaaggcttaaaaagtcttttacacaataaatgcatcttaaaaattataaaattttctta 29658054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 34702258 - 34702197
Alignment:
Q  93 aaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggacca 154  Q
    ||||||||||||| ||||||||||| ||||||| ||| |||||||||| ||||||| |||||    
T  34702258 aaaagtcttttaagcaataactacaacttaaaagttgagatattttctaataaatatgacca 34702197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 13603212 - 13603106
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaag---cattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaa 105  Q
    |||||||||||||||||||||||| || |||||    |||||||| | | ||||||||||||||||||||| || | | | || || ||||||||||| |    
T  13603212 tttacaaatataccctcataaaaatttgtgaagtattattaaatataaccactaatattaaaaagacaaacttttattgaaggttagaaaagtcttttga 13603113  T
Q  106 acaataa 112  Q
    |||||||    
T  13603112 acaataa 13603106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 948153 - 948285
Alignment:
Q  3 aatatgtttacaaatataccctcataaaaaattat-gaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtctt 101  Q
    ||||| ||| |||||||||||| ||||||||||   ||| ||||||||||||| |||||| |||||||         ||||| |||| || |||| ||||    
T  948153 aatattttttcaaatataccctgataaaaaatttgcgaaacattaaatacatccactaat-ttaaaaa---------taaatgagggatagaaaaatctt 948242  T
Q  102 ttaaacaataactacatcttaaaaattgtgatattttcttata 144  Q
    |||  | |||||||||||||||||||||| | |||||||||||    
T  948243 ttaggctataactacatcttaaaaattgtaacattttcttata 948285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 17988162 - 17988216
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatat 63  Q
    |||||||||||| |||||||| ||||| |||| |||||||||||||  |||||||    
T  17988162 tttacaaatatatcctcataataaattgtgaaacattaaatacatctgctaatat 17988216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 26976628 - 26976714
Alignment:
Q  58 taatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttata 144  Q
    |||||||||||||||||| ||||||| |||| ||  ||| |||||||||||||| ||  |  ||||||  ||||| |||||||||||    
T  26976628 taatattaaaaagacaaatattaaatgagggataacaaattcttttaaacaatagctggagtttaaaaggtgtgaaattttcttata 26976714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31003584 - 31003652
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaa 69  Q
    ||||||| |||||||||||||| | ||| |||||| | || ||||||||||||   |||||||||||||    
T  31003584 tgaatatttttacaaatatacctttatagaaaattgttaaacattaaatacattcgctaatattaaaaa 31003652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45691601 - 45691641
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaag 41  Q
    ||||||| |||||||||||||||||||||||| || |||||    
T  45691601 tgaatatttttacaaatataccctcataaaaatttgtgaag 45691641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 6688928 - 6688755
Alignment:
Q  10 ttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacat--taaataaggggtataaaagtcttttaaac 107  Q
    |||||||||||||||||||||||||| | ||||||||||||||   ||||||||   ||| ||||||||  |||||||||| || |||||||||||||||    
T  6688928 ttacaaatataccctcataaaaaattgtaaagcattaaatacacttactaatatattaaaaacaaacatattaaataagggatagaaaagtcttttaaac 6688829  T
Q  108 aataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatat 181  Q
    |||||||||| ||||||| ||||||||||||||||||  ||||||||  | |||||||||||||||||||||||    
T  6688828 aataactacaccttaaaagttgtgatattttcttatatttaggaccataatattttttgaaaattttcttatat 6688755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 18705147 - 18704967
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||| ||| ||||||| || |||||||||||||||| | | |||||||||||| | ||||||||||||| ||||| ||||||||    
T  18705147 tgaatatttttacaaatatatccttataaaaagttgtgaagcattaaatacacctattaatattaaaaacaaaaacattaaataaagggtaaaaaagtct 18705048  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatat 181  Q
    |||||  |||||||||| ||||||| || |||| ||||||||||| | |||||||  | ||||||||||||||||||||||    
T  18705047 tttaagtaataactacaccttaaaagttatgatgttttcttataatttggaccaaagatttttttgaaaattttcttatat 18704967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 3629217 - 3629410
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||| ||| ||| ||  || |||| ||||||||||||  |||||||||||||| |||  |||||||| |||| || |||||||||||||  |    
T  3629217 tttacaaatataaccttatagaatgttgtgaaacattaaatacattcactaatattaaaaatacagtcattaaattagggatacaaaagtcttttaagta 3629316  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtataa 202  Q
    ||||||||| ||||||| |||||| |||||||||||||| |||| || |  |||||| |||||||||||||||| | ||||| |||||||||||    
T  3629317 ataactacaccttaaaagttgtgacattttcttataaattggacaaaaactttttttaaaaattttcttatattaaagaccggagggagtataa 3629410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 11691059 - 11691236
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||| | |||||||||| ||||||||  ||||||||||   ||||| |||||||||| ||||||||||| ||||  ||| ||||||    
T  11691059 tgaatatttttacaaatacatcctcataaaatattatgaaatattaaatacactcactaagattaaaaagagaaacattaaatgaggg--atagaagtct 11691156  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttata 180  Q
    |||||  |||||||||| || |||||||| || ||||  ||||||||||||||||   ||||||||||||||||||||||    
T  11691157 tttaagaaataactacacctaaaaaattgcgacatttgtttataaataggaccaatttattttttgaaaattttcttata 11691236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 3257250 - 3257354
Alignment:
Q  42 cattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttctt 141  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||| | || |||||||||||||||||||  |||  ||||||| |||||||||||||||    
T  3257250 cattaaatatatccactaatattaaaaagacaaacattaaataagagatagaaaagtcttttaaacaatagttacgccttaaaagttgtgatattttctt 3257349  T
Q  142 ataaa 146  Q
    |||||    
T  3257350 ataaa 3257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 10705154 - 10705027
Alignment:
Q  18 ataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactaca 117  Q
    |||||||||||||||||||| |||||| || |||||  || ||| |||||||||||| |||||||| |||| || |||||||||||||| || |||||||    
T  10705154 ataccctcataaaaaattataaagcataaagtacattcacaaatgttaaaaagacaagcattaaattagggatagaaaagtcttttaaataa-aactaca 10705056  T
Q  118 tcttaaaaattgtgatattttcttataaa 146  Q
     |||||||||||||| |||||||||||||    
T  10705055 ccttaaaaattgtgacattttcttataaa 10705027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 2225726 - 2225586
Alignment:
Q  3 aatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttt 102  Q
    ||||| |||||||||||||| ||||||||| || |||| ||||||||||| | |||||||||||||| | |||||||||||||  |||| ||||||||||    
T  2225726 aatatttttacaaatataccttcataaaaagttgtgaaacattaaatacaaccactaatattaaaaacaaaaacattaaataaatggtagaaaagtcttt 2225627  T
Q  103 taaacaataactacatcttaaaaattgtgatattttcttat 143  Q
    |||||||| |   || ||||||  ||||||| |||||||||    
T  2225626 taaacaatcatgtcaccttaaatgttgtgatgttttcttat 2225586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 11983609 - 11983705
Alignment:
Q  29 aaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaa 125  Q
    ||||||| |||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||| |||| |||||||    
T  11983609 aaaaattgtgaaacattaaatacatccactaatattaaaaagagaaacattaaatgaggggtaaaaaaatcttttaaacaataattacaccttaaaa 11983705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 27193156 - 27193004
Alignment:
Q  4 atatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtctttt 103  Q
    |||| |||||||||||| | ||||||||||||||||| ||||||| | |   | | |||||||||||| |  |||||||| | || || |||||||||||    
T  27193156 atatttttacaaatatatcatcataaaaaattatgaaacattaaaaatactcagttatattaaaaagagatgcattaaatgaaggataaaaaagtctttt 27193057  T
Q  104 aaacaataactacatcttaaaaattgtgatattttcttataaataggaccaac 156  Q
    |||||||||||| ||||||||| |||||| |||| ||||||||||||| ||||    
T  27193056 aaacaataactatatcttaaaagttgtgacatttccttataaataggatcaac 27193004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 4449585 - 4449438
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacatt-aaataaggggtataaaagtc 99  Q
    ||||||| ||||||||||||||||||| | ||||| |||  ||||||||||| | | ||| |||||||||||||||||| |||| |||| || |||||||    
T  4449585 tgaatatttttacaaatataccctcatgagaaattgtga--cattaaatacaaccattaagattaaaaagacaaacattgaaatgaggg-taaaaaagtc 4449489  T
Q  100 ttttaaacaataactacat--cttaaaaattgtgatattttcttataaata 148  Q
    ||||||  ||||| ||||   |||||||||||||| |||||||||||||||    
T  4449488 ttttaagaaataaatacacaccttaaaaattgtgacattttcttataaata 4449438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 7735894 - 7735722
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||||| |||||||||| | || ||||||||||| |  ||||||||||||| | |||||||||||||  | || |||||| ||||||  |    
T  7735894 tttacaaatatacccttataaaaaattgtcaaacattaaatacacccgctaatattaaaaacaaaaacattaaataattgatagaaaagttttttaagta 7735795  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatat 181  Q
    |||||| ||  | |||| | | ||||||||||||||| || |||||| |  | ||||||||||||||| ||||    
T  7735794 ataactgcaattcaaaagtagcgatattttcttataattatgaccaaaatttcttttgaaaattttctcatat 7735722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 14417995 - 14417914
Alignment:
Q  10 ttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggta 91  Q
    |||||||| |||| |||||||||||| |||||||||||||||| | ||||||||| |||| ||||| |||||| ||||||||    
T  14417995 ttacaaatttaccttcataaaaaattgtgaagcattaaatacacccactaatatttaaaatacaaatattaaacaaggggta 14417914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 19296167 - 19296348
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||| ||||||||||||||||| || | ||  |||||| |||||  |||||||||||| || |||||||||||| ||  || ||||||||||||| ||    
T  19296167 tttacatatataccctcataaaaa-ttgtaaaatattaaacacatccgctaatattaaaatgagaaacattaaatatgga-tagaaaagtcttttaagca 19296264  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaa--caaattttttgaaaattttcttatatttaggaccg 190  Q
    |||||||||  |||||| |||||| ||||| |||||   ||||||||    | ||||||||||||||| ||||| | |||||||    
T  19296265 ataactacactttaaaagttgtgacatttttttatattgaggaccaattttatttttttgaaaattttattataataaggaccg 19296348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 29948070 - 29948192
Alignment:
Q  4 atatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaat-aaggggtataaaagtcttt 102  Q
    |||| ||||||||||||| || |||||||||||| || |||||||||||   | |||||||||||| | ||||||||||| |||| |||| |||   |||    
T  29948070 atatttttacaaatatactctaataaaaaattataaaacattaaatacactcattaatattaaaaatataaacattaaataaaggagtattaaaactttt 29948169  T
Q  103 taaacaataactacatcttaaaa 125  Q
    |||||||||| |||| |||||||    
T  29948170 taaacaataaatacaccttaaaa 29948192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 17693699 - 17693562
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtata-aaagtcttttaaac 107  Q
    ||||||||||||||||| |||||  |||||||| |    ||| ||| |||| |||||||| || ||||||| ||| |||  || | |||||||||||       
T  17693699 tttacaaatataccctcgtaaaattttatgaagta----atatatccactagtattaaaatgataaacattgaatgaggactaaagaaagtcttttatgt 17693604  T
Q  108 aataactacatcttaaaaattgtgatattttcttataaatag 149  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  17693603 aataaatacatcttaaaaattgtgacattttcttataaatag 17693562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 36482456 - 36482534
Alignment:
Q  37 tgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataacta 115  Q
    |||| ||||||||||||  ||||||| || ||| ||||  ||||||||||||||| ||||||||||||| |||||||||    
T  36482456 tgaaacattaaatacattcactaataatagaaatacaattattaaataaggggtagaaaagtcttttaagcaataacta 36482534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 10656502 - 10656555
Alignment:
Q  95 aagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    ||||||||||| ||||||||||||| ||||| || |||||||||||||||||||    
T  10656502 aagtcttttaagcaataactacatcataaaagttttgatattttcttataaata 10656555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 35931646 - 35931539
Alignment:
Q  46 aaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataa 145  Q
    ||||||||| | |||||||||||| |  | |||||||| | ||| | ||||||| |||||| ||||||||||  ||| || || ||| ||||||||||||    
T  35931646 aaatacatctattaatattaaaaata--atcattaaatgaaggggagaaaagtcatttaaaaaataactacactttagaagttatgaaattttcttataa 35931549  T
Q  146 ataggaccaa 155  Q
    ||||||||||    
T  35931548 ataggaccaa 35931539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 10561447 - 10561391
Alignment:
Q  93 aaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaatag 149  Q
    |||||||||||||||||||||||||| | ||||| ||||| | ||||||| ||||||    
T  10561447 aaaagtcttttaaacaataactacatttaaaaaagtgtgacaatttcttacaaatag 10561391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 14917863 - 14917820
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaataca 52  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||||    
T  14917863 tttacaaatataccctcgtaaaaaattgtgaagaattaaataca 14917820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 5712790 - 5712716
Alignment:
Q  56 actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgt 130  Q
    ||||||||||||| |||||||| |||||    |||| |||||||||| ||||||||| ||||| |||||| ||||    
T  5712790 actaatattaaaatgacaaacactaaatggatggtagaaaagtctttaaaacaataattacattttaaaagttgt 5712716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 73622 - 73570
Alignment:
Q  93 aaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataa 145  Q
    ||||||||||||| ||||||||||| ||||||  |||||||| ||| ||||||    
T  73622 aaaagtcttttaagcaataactacaccttaaaggttgtgataattttttataa 73570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 10656018 - 10656066
Alignment:
Q  38 gaagcattaaatacatcgactaatattaaaaagacaaacattaaataag 86  Q
    |||| |||||||||||| | ||||||||||| |||||| ||||||||||    
T  10656018 gaagaattaaatacatccaataatattaaaatgacaaatattaaataag 10656066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 43442145 - 43442042
Alignment:
Q  46 aaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataa 145  Q
    ||||||| | ||||| |||||||||| || |||||||| | || || |||  |||||||| ||||||||| | |||||| || || | ||||||||||||    
T  43442145 aaatacacccactaagattaaaaagaaaatcattaaatgaaggataaaaatatcttttaagcaataactataccttaaagat-gtaaaattttcttataa 43442047  T
Q  146 atagg 150  Q
    |||||    
T  43442046 atagg 43442042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 18838891 - 18838723
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||| || |||||||| | ||||| ||||||||||||||||    
T  18838891 tttacaaatataccctcataaaaaattgtgaaacattaaatacacccactaatattaaaaagataatcattaaatga-gggtagaaaagtcttttaaaca 18838793  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttctta 178  Q
    |||| || | ||||||| || ||| ||||||| |||||||| ||||| || |||||| ||||||||||||    
T  18838792 ataattataccttaaaagttatgacattttctcataaatagaaccaaaaagttttttaaaaattttctta 18838723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 31707352 - 31707480
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| |||||||||||||||||||||||| |||||||||||   ||||| | |||||||||||||||||||||||||||||||||||| ||||||||    
T  31707352 tgaatatttttacaaatataccctcataaaaatttatgaagcat---atacacccactaatattaaaaagacaaacattaaataaggggtagaaaagtct 31707448  T
Q  101 tttaaacaataactacatcttaaaaattgtga 132  Q
    | ||| ||||||||||| ||||||| ||||||    
T  31707449 tctaagcaataactacaccttaaaagttgtga 31707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 34319682 - 34319497
Alignment:
Q  18 ataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactaca 117  Q
    |||||||||||||||||| | || ||||||||| ||| |  ||||||||||||| ||||||||||||| ||||| |||||  ||||||||||||||  ||    
T  34319682 ataccctcataaaaaattgtaaaacattaaatatatccataaatattaaaaagaaaaacattaaataa-gggtagaaaagctttttaaacaataaccgca 34319584  T
Q  118 tcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtataata 204  Q
      ||||||||||||| ||||||||||||||||||||||    ||||||||||||||||||||| | ||||||| ||| |||| ||||    
T  34319583 ctttaaaaattgtgacattttcttataaataggaccaagtttttttttgaaaattttcttataataaggaccggaggaagtacaata 34319497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 42312401 - 42312585
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaa-------agacaaacattaaataaggggtata 93  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||  ||||||||||||       |||||||||| ||| || || || |    
T  42312401 tgaatatttttacaaatataccctcataaaaaattgtgaagcataaaatatatcctctaatattaaaaaaaaaaaagacaaacataaaacaaaggataga 42312500  T
Q  94 aaagtcttttaaacaataactacatcttaaaaattgtga-tattttcttataaataggaccaacaaattttttgaaaattttctt 177  Q
    |||||||||||| ||||||||| | ||||||| |||||| |||||| ||||||||| ||||||  ||||||||||| ||||||||    
T  42312501 aaagtcttttaagcaataactataccttaaaagttgtgattatttttttataaataagaccaaataattttttgaatattttctt 42312585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 25376852 - 25377044
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    ||||||||||||||||| |||||| || ||||| |||||||| |   || |||||| ||||||  |||||||||| |||| || ||||||||||||||||    
T  25376852 tttacaaatataccctcttaaaaatttgtgaagtattaaatatactcacaaatattgaaaagatcaacattaaatgagggttagaaaagtcttttaaaca 25376951  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtataat 203  Q
    |||| || | |||||||  |||||  ||||||| |||||| ||| || |  |||||| ||||||||||  |||||||||||||||||||||||||    
T  25376952 ataattataccttaaaatctgtgactttttcttgtaaataagacgaaaatttttttttaaaattttct--tatttaggaccgaagggagtataat 25377044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 33721619 - 33721768
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcga-ctaata---ttaaaaagacaaacattaaataaggggtataaaagtctttta 104  Q
    |||||||| |||| ||||||||||||| |||| ||||||||||| | | ||||||   |||||| || ||||||||||  || |||| ||||||||||||    
T  33721619 tttacaaacatactctcataaaaaattgtgaaacattaaatacaccaaactaatactattaaaaggataaacattaaacgagaggtagaaaagtctttta 33721718  T
Q  105 aacaataactacatcttaaaaattgtgatattttcttataaataggacca 154  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  33721719 aacaataactacacattaaaaattgtgacattttcttataaataggacca 33721768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 44884411 - 44884519
Alignment:
Q  61 tattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaa--ttgtgatattttcttataaataggaccaacaa 158  Q
    |||||||||| |||||||||||| |||| || ||||||||||||||||||||||||| ||||||||  |||||| ||||||||||| |||||||||| ||    
T  44884411 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaa 44884509  T
Q  159 attttttgaa 168  Q
     |||||||||    
T  44884510 cttttttgaa 44884519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 30615262 - 30615129
Alignment:
Q  3 aatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttt 102  Q
    ||||| |||||||||| ||| | ||||||||||||||| ||||||||||||| |||||||||||||||||||  ||||||| |  |  |||||| |||||    
T  30615262 aatatttttacaaatacacctttataaaaaattatgaaacattaaatacatctactaatattaaaaagacaactattaaatgaatg--ataaaaatcttt 30615165  T
Q  103 taaacaataactacatcttaaaaattgtgatattttc 139  Q
    |||  ||||| |||| ||||||| |||||||||||||    
T  30615164 taagtaataattaca-cttaaaagttgtgatattttc 30615129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 27032278 - 27032109
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||||| ||| ||| || ||||  |||||||||||  ||||||||||||||  ||| ||||| || || |||| | | ||||||||| ||    
T  27032278 tttacaaatatacccttatagaaagttgtgaaatattaaatacatttactaatattaaaaaagcaatcattacatgagaggtagacaggtcttttaagca 27032179  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttata 180  Q
    || |  ||| ||||| ||||||||||||||| ||||||||| ||||| |||  | |||||||||||||||||    
T  27032178 attatcacaccttaagaattgtgatattttcctataaatagaaccaaaaaa--tattgaaaattttcttata 27032109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 47231573 - 47231718
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| ||||||| |||||| ||||||||| || |||| |||||||||||     |||||||| |||||||| ||||||||||| |||| |||| |||    
T  47231573 tgaatatttttacaattatacc-tcataaaaagttgtgaatcattaaatacacttgttaatattataaagacaa-cattaaataagaggtaaaaaaatct 47231670  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    |||||||||||| || ||||||||| |  ||| |||||||||||||||    
T  47231671 tttaaacaataaatatatcttaaaagtattgacattttcttataaata 47231718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 16572389 - 16572251
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||| ||||||||| | ||| || ||| ||||  ||||||||||   |||||||||||||| |||  |||||||| |||| || |||| ||| |||| ||    
T  16572389 tttaaaaatataccattatagaatattgtgaaatattaaataca---actaatattaaaaatacagtcattaaatgagggataaaaaattctgttaagca 16572293  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaatagg 150  Q
    ||||||||| ||||||| |||||| |||||||||||||||||    
T  16572292 ataactacaccttaaaagttgtgacattttcttataaatagg 16572251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 42183366 - 42183299
Alignment:
Q  137 ttcttataaataggaccaacaaattttttgaaaattttcttatatttaggaccgaagggagtataata 204  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| ||| |||| ||||| |||||||    
T  42183366 ttcttataaataggaccaacaatttttttcaaaattttcttatatatagaaccggagggaatataata 42183299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 4960343 - 4960253
Alignment:
Q  62 attaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggac 152  Q
    ||||||| |||||||||||||| || |||||||||| ||||||| || |||| ||| |||||||||||| | | ||| |||||||||||||    
T  4960343 attaaaatgacaaacattaaatgagaggtataaaagacttttaagcattaacaacaccttaaaaattgtaacacttttttataaataggac 4960253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 54864017 - 54863874
Alignment:
Q  56 actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    ||||||||| ||||||  |||||||||| || | || ||||| |||||||||||||| |  | ||||||| ||||||  |||||||||||||||||||||    
T  54864017 actaatattgaaaagatcaacattaaatgagagttagaaaagccttttaaacaataaatgtaccttaaaagttgtgactttttcttataaataggaccaa 54863918  T
Q  156 --caaattttttgaaaattttcttatatttaggaccgaagggag 197  Q
          |||||||||||||||||||||  ||| |||| ||||||    
T  54863917 ttttttttttttgaaaattttcttataaatagaaccggagggag 54863874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 32599766 - 32599820
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatat 63  Q
    |||| ||||||||| |||||||||||| |||||||||||||||||| ||||||||    
T  32599766 tttataaatataccttcataaaaaattgtgaagcattaaatacatccactaatat 32599820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 56093682 - 56093596
Alignment:
Q  58 taatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttata 144  Q
    ||||||||||||||  ||||| |||||| || || |||||||||||||| ||||| |||| ||||||| || ||||||||| |||||    
T  56093682 taatattaaaaagattaacatcaaataatggataaaaaagtcttttaaataataattacaccttaaaagttatgatatttttttata 56093596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 25382490 - 25382395
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtctttta 104  Q
    |||||||||||||||| || |||| || ||||| |||||| | |   ||||||| ||||||||| ||||||||||||||| || ||||||| ||||    
T  25382490 tttacaaatatacccttatgaaaatttgtgaagtattaaaaatactcactaatactaaaaagactaacattaaataagggctacaaaagtcattta 25382395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 21128189 - 21128097
Alignment:
Q  56 actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaata 148  Q
    |||||||| ||||||| |||||| |||| |||| |  |||||||||||||| ||||| || |  |||||| || ||| |||||||||||||||    
T  21128189 actaatataaaaaagataaacataaaatgagggttggaaaagtcttttaaaaaataaatatacattaaaagttatgacattttcttataaata 21128097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 42183601 - 42183535
Alignment:
Q  9 tttacaaatataccctcataa-aaaattatgaagcattaaatacatcgactaatattaaaaagacaa 74  Q
    |||||||||||| |||||||| |||||| |||||||||||||| |   | |||||||||||||||||    
T  42183601 tttacaaatatatcctcataaaaaaattgtgaagcattaaataaacacattaatattaaaaagacaa 42183535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 40414163 - 40414200
Alignment:
Q  88 ggtataaaagtcttttaaacaataactacatcttaaaa 125  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  40414163 ggtagaaaagtcttttaaacaataactacaccttaaaa 40414200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 2632470 - 2632404
Alignment:
Q  60 atattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaatt 128  Q
    ||||||||||||||| ||||||| ||||  || |||| | |||||||||||||||||| ||||||||||    
T  2632470 atattaaaaagacaatcattaaaaaagga-taaaaaa-tattttaaacaataactacaccttaaaaatt 2632404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 37 - 199
Target Start/End: Complemental strand, 3134 - 2971
Alignment:
Q  37 tgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatatt 136  Q
    |||| ||||||||||||| |||||||||||||||| ||  ||| ||| |||| || ||||||||||||||||||||||||| ||||||| |||||| |||    
T  3134 tgaaacattaaatacatccactaatattaaaaagagaattattgaatgagggatagaaaagtcttttaaacaataactacaccttaaaagttgtgacatt 3035  T
Q  137 ttcttataaataggaccaacaa-attttttgaaaattttcttatatttaggaccgaagggagta 199  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||||||| || |||| ||||||||    
T  3034 ttcttataaataggaccaaaaactttttttgaaaattatcttatattgagaaccggagggagta 2971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 505 - 696
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    |||||||||||||||| ||| ||  || |||| ||||||||  ||| ||||||||||||| ||||| |||||||| |||| || ||||||||||||||||    
T  505 tttacaaatatacccttatagaatgttgtgaaacattaaatggatccactaatattaaaacgacaatcattaaatgagggataaaaaagtcttttaaaca 604  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaa-caaattttttgaaaattttcttatatttaggaccgaagggagta 199  Q
    ||||||||| ||||||  ||||||  ||||||||||| |||||||||     |||||||||||||| |||||||| ||||||| ||||||||    
T  605 ataactacaccttaaatgttgtgactttttcttataattaggaccaattgttttttttgaaaatttacttatattaaggaccggagggagta 696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 51421 - 51267
Alignment:
Q  1 tgaatatgtttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtct 100  Q
    ||||||| ||||||| |||||||||||||||| || |||| ||||||||||| | ||||| |||||||||| ||  ||||||| |||| || |||| |||    
T  51421 tgaatatttttacaattataccctcataaaaagttgtgaaacattaaatacaccaactaaaattaaaaagagaattattaaatgagggataaaaaaatct 51322  T
Q  101 tttaaacaataactacatcttaaaaattgtgatattttcttataaataggaccaa 155  Q
    ||||| |||||| |||| ||||||| |||||| |||| ||||||||||| |||||    
T  51321 tttaagcaataaatacaccttaaaagttgtgacatttacttataaatagaaccaa 51267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 38841 - 39010
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaagcattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaaca 108  Q
    ||||||||||||| |||||||||| ||  |||  |||||| | ||| ||||||||| | || || | |||| |||||||| || |||| | |||||||||    
T  38841 tttacaaatatactctcataaaaatttgggaactattaaacatatccactaatattgataaaacga-cattcaataagggctagaaaaatattttaaaca 38939  T
Q  109 ataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattttttgaaaattttcttata 180  Q
    |||| || ||||||||||||||||  |||||||||||||| |||||| |  |||||||| ||||||||||||    
T  38940 ataaatatatcttaaaaattgtgactttttcttataaataagaccaa-actttttttgagaattttcttata 39010  T

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Target: scaffold0026 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 68897 - 68798
Alignment:
Q  50 acatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaaacaataactacatcttaaaaattgtgatattttcttataaatag 149  Q
    ||||| ||||||||||||| |||||||||||||| |||  || |||||||||||||  |||||||||| |||||||| | || | |||||||||||||||    
T  68897 acatccactaatattaaaacgacaaacattaaatgaggaataaaaaagtcttttaa--aataactacaccttaaaaagt-tgcttttttcttataaatag 68801  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 131869 - 131763
Alignment:
Q  9 tttacaaatataccctcataaaaaattatgaag---cattaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaa 105  Q
    |||||||||||||||||||||||| || |||||    |||||||| | | ||||||||||||||||||||| || | | | || || ||||||||||| |    
T  131869 tttacaaatataccctcataaaaatttgtgaagtattattaaatataaccactaatattaaaaagacaaacttttattgaaggttagaaaagtcttttga 131770  T
Q  106 acaataa 112  Q
    |||||||    
T  131769 acaataa 131763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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