View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_high_38 (Length: 231)
Name: NF10041_high_38
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 35749267 - 35749156
Alignment:
| Q |
7 |
cgtttaagaggttgacatctcctaaaatatatttttccatacaacctcataacattgagctccgttaccgtctaagctttaatttctatacattgacaat |
106 |
Q |
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| T |
35749267 |
cgtttaagaggttgacatctcctaaaatatatttttccatacaacctcataacattaagctccgttaccgtctaagctttaatttctatacattgacaat |
35749168 |
T |
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| Q |
107 |
atatacaaatta |
118 |
Q |
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||||| |||||| |
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| T |
35749167 |
atatagaaatta |
35749156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 35749056 - 35748953
Alignment:
| Q |
128 |
aggctataaacatagcctcaacatacaaattggaaatgcaggattcatatttcacatttttcatatttgacttatcattattcagtttcacattgcacta |
227 |
Q |
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|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35749056 |
aggctataaacatagcatcaagatacaaattggaaatgaaggattcatatttcacatttttcatatttgacttatcattattcagtttcacattgcacta |
35748957 |
T |
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| Q |
228 |
acta |
231 |
Q |
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|||| |
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| T |
35748956 |
acta |
35748953 |
T |
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