View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_high_4 (Length: 450)
Name: NF10041_high_4
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_high_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 38483906 - 38483457
Alignment:
| Q |
1 |
tcaccgcacgccaaggataagctctatcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483906 |
tcaccgcacgccaaggataagctctatcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaa |
38483807 |
T |
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| Q |
101 |
caaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatttccatcgaaaaaactactcccgatatcaataggccatttcaatttctca |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38483806 |
caaattccaaaacgacctccgttcaacaaaacccgtcttcccaacacgatttccatcgaaaaaactactcccaatatcaataggccatttcaatttctca |
38483707 |
T |
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| Q |
201 |
aaacacctcttactccaaaaatactcatttatatcatcataatttctccatctcgtatgtggttccgttccattaccactcctaatctcagcctcaaact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483706 |
aaacacctcttactccaaaaatactcatttatatcatcataatttctccatcttgtatgtggttccgttccattaccactcctaatctcagcctcaaact |
38483607 |
T |
|
| Q |
301 |
tccccattttatcaatcggcttcacaacatcgtttataaacccatattgcgaatgaaagaacggttcataatcataatgatcaatgtttttcttactccg |
400 |
Q |
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|| ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38483606 |
tcaccattttataaatcggcttcacaacatcgtttaaaaaaccatattgcgaatgaaagaacggttcataatcataatgatcattgtttttcttactccg |
38483507 |
T |
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| Q |
401 |
caagattttatttaaatcatttgccatatgctgacaaatatagccaatac |
450 |
Q |
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| T |
38483506 |
caagattttatttaaatcatttgtcatatgatgaaaaatatagcaaatac |
38483457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 3682910 - 3682860
Alignment:
| Q |
201 |
aaacacctcttactccaaaaatactcatttatatcatcataatttctccat |
251 |
Q |
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| T |
3682910 |
aaacacctcctactccaaaaatactcatttatatcatcataattcctccat |
3682860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 250
Target Start/End: Complemental strand, 30118257 - 30118047
Alignment:
| Q |
52 |
cttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatt |
151 |
Q |
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||||||||||||| | |||||| | ||||||||| |||||||||| ||||| |||||||||||| ||| | |||||||| || ||||| |||||| | || |
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| T |
30118257 |
cttgaagaaacaacaccaacataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaacatgttt |
30118158 |
T |
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| Q |
152 |
tccatcg------------aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatactcatttatatcatca |
239 |
Q |
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|| | |||||| ||||||| | |||| ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
30118157 |
ccccttaccaacagtagtaaaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaatactcattaatatcatca |
30118058 |
T |
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| Q |
240 |
taatttctcca |
250 |
Q |
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||||||||||| |
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| T |
30118057 |
taatttctcca |
30118047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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