View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_high_41 (Length: 229)
Name: NF10041_high_41
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 6 - 184
Target Start/End: Original strand, 29907049 - 29907227
Alignment:
| Q |
6 |
agctagctctctaacttacagctatgtaccactttgtattgcacctcttatttatagtgaaatgcattagttatgctcctgtcnnnnnnngaagttgctt |
105 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29907049 |
agctagctctttaacttacagctatgtaccactttgtattgcacctcttatttatagtgaaatgcattagttatgctcctgtcaaaaacagaagttgctt |
29907148 |
T |
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| Q |
106 |
aaaaaattcaatcatcacagtaaaatgtggatgactggattaagtatgatatagcatataatgatttttccttctccaa |
184 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29907149 |
aaaaaattcaatcatcacagcaaaatgtggatgactggattaagtatgatatagcatataatgatttttccttctccaa |
29907227 |
T |
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