View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_high_42 (Length: 228)
Name: NF10041_high_42
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_high_42 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 103 - 228
Target Start/End: Original strand, 40923815 - 40923940
Alignment:
| Q |
103 |
gaatccctgactgttgaaggatgggttgattggtagaaatatacatccccaccatcatcctttgtttcttattaagttatcattttttgtcaattttata |
202 |
Q |
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| T |
40923815 |
gaatccctgactgttgaaggatgggttgatcggtagaaatctacatccccaccatcatcctttgtttcttattaagttatcattttttctcaattttata |
40923914 |
T |
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| Q |
203 |
gactcagtctaaacctttctcaactt |
228 |
Q |
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| T |
40923915 |
gactcagtctaaacctttctcaactt |
40923940 |
T |
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Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 1636405 - 1636308
Alignment:
| Q |
5 |
ttctctgcacctttgattaattgttttgccacgtgtcgctcattcgtcaaaagaacaggaaaactgaagcaagttggaactggagcagatctgaactc |
102 |
Q |
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| T |
1636405 |
ttctctgcacctttgattaattgttttgccacgtgtcgctcatccgtcaaaagaacaggaaaactggagtaagttggaactggagcagatctgaactc |
1636308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 1636947 - 1637032
Alignment:
| Q |
17 |
ttgattaattgttttgccacgtgtcgctcattcgtcaaaagaacaggaaaactgaagcaagttggaactggagcagatctgaactc |
102 |
Q |
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| T |
1636947 |
ttgattaattgttttgccacgtgtcgctcatccgtcaaaagaacaggaaaactggagcaagtttgaactagagcagatctgaactc |
1637032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 41827380 - 41827287
Alignment:
| Q |
8 |
tctgcacctttgattaattgttttgccacgtgtcgctcattcgtcaaaagaacaggaaaactgaagcaagttggaactggagcagatctgaactc |
102 |
Q |
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| T |
41827380 |
tctgaaccgttgatgaattgtttcgacacgtgtcgctcatctgtcaaa-gaacaggaaaactaaggcaagttggaaatggagcagatctgaactc |
41827287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 28007918 - 28007822
Alignment:
| Q |
5 |
ttctctgcacctttgattaattgttttgccacgtgtcgctcattcgtcaaaagaacaggaaaactgaagcaagttggaactggagcagatctgaact |
101 |
Q |
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| T |
28007918 |
ttctctgcacctttgattaattgttttgccacgtgtcgctcatccgtcaaaagaacatgaaaactggagcaagttggaactggagcagatctgaact |
28007822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 28008460 - 28008546
Alignment:
| Q |
17 |
ttgattaattgttttgccacgtgtcgctcattcgtcaaaagaacaggaaaactgaagcaagttggaactggagcagatctgaactcg |
103 |
Q |
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| T |
28008460 |
ttgattaattgttttgtcacgtgtcgctcatccgtcaaaagaacaggaaaactggagcaagttagaactggagcagatctgaactcg |
28008546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 12215819 - 12215916
Alignment:
| Q |
5 |
ttctctgcacctttgattaattgttttgccacgtgtcgctcattcgtcaaaagaacaggaaaactgaagcaagttggaactggagcagatctgaactc |
102 |
Q |
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| T |
12215819 |
ttctctgcacctttgattaatttttttgccacgtgtcgctcatccgtcaaaagaacaggaaaagtggagcaagttggaactggagcagatctgaactc |
12215916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 12215279 - 12215194
Alignment:
| Q |
17 |
ttgattaattgttttgccacgtgtcgctcattcgtcaaaagaacaggaaaactgaagcaagttggaactggagcagatctgaactc |
102 |
Q |
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| T |
12215279 |
ttgattaattgttttgccacgtgtcgctcatccgtcaaaagaacaggaaaactggagcaagttagaactggagcaaatctgaactc |
12215194 |
T |
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