View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10041_low_1 (Length: 834)
Name: NF10041_low_1
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-132; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 337 - 615
Target Start/End: Complemental strand, 24198203 - 24197914
Alignment:
| Q |
337 |
atcgttgttgtttgatgtcttcatcgctg-----------ccaccactcaaaataaattagtttgttcttctcatcttttaaaataaattggtttcttct |
425 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
24198203 |
atcgttgttgtttgatgtcttcatcgctgtcaccgctgaaccaccactcaaaataaattagtttgttcttctcatcttttgaaataaattagtttcttct |
24198104 |
T |
|
| Q |
426 |
tctcaaccgcgactactgtttgatgtcttctcaaccgtagcaattgattttgacagtgatgaagaaaataacaatgttttgatgtgtttaagggaatatt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24198103 |
tctcaaccgcgactactgtttgatgtcttctcaaccgtagcaattgattttgacagtgatgaagaaaataacaatgttttgatgtgtttaagggaatatt |
24198004 |
T |
|
| Q |
526 |
catcaccaattacaaaaattgatgcgtgaatgatgaattaaacaagttgttccatgttttaaaattatcattgatgattaattgaaatta |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24198003 |
catcaccaattacaaaaattgatgcgtgaatgatgaattaaacaagctgttccatgttttaaaattatcattgatgattaattgaaatta |
24197914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 620 - 820
Target Start/End: Complemental strand, 24197885 - 24197685
Alignment:
| Q |
620 |
ctgtgtggtggtaggtggaggtggacggtgatgacaagagatgggagagtagtagaatatgtaacataagctgagggacattgatttgnnnnnnnattta |
719 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
24197885 |
ctgtgtggtggtaggtggaggtggacgatgatgacaagagatgggagagtagtagaatatgtaacataagctgagggacactaatttgtttttttattta |
24197786 |
T |
|
| Q |
720 |
ttaaagaaatctcagcccttaatctttgttttgccacatgtcttgcatctaaagtctaaatagactaaattgaactttaggtaaatggagcatacctgaa |
819 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24197785 |
ttaaagaaatctcagcccttaatctttgttttgccacatgtcttgcatccaaagtctaaatagactaaattgagctttaggtaaatggagcatacctgaa |
24197686 |
T |
|
| Q |
820 |
g |
820 |
Q |
| |
|
| |
|
|
| T |
24197685 |
g |
24197685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 103 - 338
Target Start/End: Complemental strand, 24200046 - 24199812
Alignment:
| Q |
103 |
taagtggcattcgagaggaaattgcaattcacactgtttctactgtttattcacttttctttatcaattctttgcnnnnnnnngttcaatcgttgtttgc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24200046 |
taagtggcattcgagaggaaattgcaattcacactacttctactgtttattcacttttctttatcaattctttgcttttttttgttcaatcgttgtttgc |
24199947 |
T |
|
| Q |
203 |
taatagtttatgcaaattagaaatatcttgatttttaaatgatattcaatggttctctcnnnnnnnnnnnnnnntgatattcgatggtttatgtaatgtt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |||||| |
|
|
| T |
24199946 |
taatagtttatgcaaattagaaatatcttgattttcaaatgatattcaatggttctctc-aaaaacaaaaaaaatgatattcaatggtttatgcaatgtt |
24199848 |
T |
|
| Q |
303 |
cttcaaaaacctcgatctttaataataatcattaat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24199847 |
cttcaaaaacctcgatctttaataataatcattaat |
24199812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 726 - 819
Target Start/End: Original strand, 24198339 - 24198432
Alignment:
| Q |
726 |
aaatctcagcccttaatctttgttttgccacatgtcttgcatctaaagtctaaatagactaaattgaactttaggtaaatggagcatacctgaa |
819 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||| | |||| ||| | ||||| |||||||| || | |||||||||| ||||||| ||||| |
|
|
| T |
24198339 |
aaatctcagcccttaaactttattttgccacatgtcctacatccaaaatataaatggactaaatggagcattaggtaaatagagcatatctgaa |
24198432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 366 - 615
Target Start/End: Complemental strand, 43449947 - 43449698
Alignment:
| Q |
366 |
ccaccactcaaaataaattagtttgttcttctcatcttttaaaataaattggtttcttcttctcaaccgcgactactgtttgatgtcttctcaaccgtag |
465 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43449947 |
ccaccgctcaaaataaattagtttgttcttctcatcttttgaaataaattagtttattcttctcaaccgcgactactgtttgatgtcttctcaaccgtag |
43449848 |
T |
|
| Q |
466 |
caattgattttgacagtgatgaagaaaataacaatgttttgatgtgtttaagggaatattcatcaccaattacaaaaattgatgcgtgaatgatgaatta |
565 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43449847 |
caattgattttgacaatgatgaagaaaataacaatgttttgatgtgtttaagggaatattcatcaccaattacaaaaattgatgcgtgaatgatgaatta |
43449748 |
T |
|
| Q |
566 |
aacaagttgttccatgttttaaaattatcattgatgattaattgaaatta |
615 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43449747 |
aacaagctgttccatgttttaaaattatcattgatgattaattgatatta |
43449698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 616 - 819
Target Start/End: Complemental strand, 43449673 - 43449470
Alignment:
| Q |
616 |
gtgactgtgtggtggtaggtggaggtggacggtgatgacaagagatgggagagtagtagaatatgtaacataagctgagggacattgatttgnnnnnnna |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43449673 |
gtgactgtgtggtggtaggtggaggtggacggtgatgataagagatgggagagtagtagaatatgtaacataagctgagggacactgatttgtttttttt |
43449574 |
T |
|
| Q |
716 |
tttattaaagaaatctcagcccttaatctttgttttgccacatgtcttgcatctaaagtctaaatagactaaattgaactttaggtaaatggagcatacc |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43449573 |
tttattaaagaaatctcagcccttaatctttgttttgccacatgtcttgcatccaaagcctaaatagactaaattgagctttaggtaaatggagcatacc |
43449474 |
T |
|
| Q |
816 |
tgaa |
819 |
Q |
| |
|
|||| |
|
|
| T |
43449473 |
tgaa |
43449470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 726 - 819
Target Start/End: Original strand, 43450123 - 43450216
Alignment:
| Q |
726 |
aaatctcagcccttaatctttgttttgccacatgtcttgcatctaaagtctaaatagactaaattgaactttaggtaaatggagcatacctgaa |
819 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||| | |||| ||| | ||||| |||||||| || | |||||||||||||||||||||||| |
|
|
| T |
43450123 |
aaatctcagcctttaaactttattttgccacatgtcctccatccaaaatataaatggactaaatggagcattaggtaaatggagcatacctgaa |
43450216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 4e-65; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 32 - 261
Target Start/End: Complemental strand, 47698861 - 47698632
Alignment:
| Q |
32 |
taaagacaccgttattaatgcacctgatatgannnnnnnnnactaagttatcctatggaaatatctatatataagtggcattcgagaggaaattgcaatt |
131 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
47698861 |
taaagacgccgttattaatgcgcctgatatgatttttttttactaagttaccctatggaaatatctatatataagtggcattcgagagaaaattgcaaat |
47698762 |
T |
|
| Q |
132 |
cacactgtttctactgtttattcacttttctttatcaattctttgcnnnnnnnngttcaatcgttgtttgctaatagtttatgcaaattagaaatatctt |
231 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
47698761 |
catactgcttctactgtttattcacttttctttatcaattctttgtttttttttgttcaatcgttgtttgctaatagtttatgcaaatgagacatatctt |
47698662 |
T |
|
| Q |
232 |
gatttttaaatgatattcaatggttctctc |
261 |
Q |
| |
|
||||| |||||||||||||| |||||||| |
|
|
| T |
47698661 |
aattttcaaatgatattcaatagttctctc |
47698632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 751 - 819
Target Start/End: Complemental strand, 35274512 - 35274444
Alignment:
| Q |
751 |
tgccacatgtcttgcatctaaagtctaaatagactaaattgaactttaggtaaatggagcatacctgaa |
819 |
Q |
| |
|
||||||||||||| |||| ||||| ||||| |||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
35274512 |
tgccacatgtcttccatccaaagtttaaatggactaaatggaacattacctaaatggagcatacctgaa |
35274444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 47698620 - 47698575
Alignment:
| Q |
277 |
tgatattcgatggtttatgtaatgttcttcaaaaacctcgatcttt |
322 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
47698620 |
tgatattcaatggtttatgcaatgtttttcaaaaacctcgatcttt |
47698575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 748 - 817
Target Start/End: Complemental strand, 10696570 - 10696500
Alignment:
| Q |
748 |
ttttgccacatgtcttgcatctaaagtc-taaatagactaaattgaactttaggtaaatggagcatacctg |
817 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||| ||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
10696570 |
ttttgccacatgtcttgcatccaaacccctaaatggactaaattgagcattacctaaatggagcatacctg |
10696500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 716 - 819
Target Start/End: Complemental strand, 32160417 - 32160314
Alignment:
| Q |
716 |
tttattaaagaaatctcagcccttaatctttgttttgccacatgtcttgcatctaaagtctaaatagactaaattgaactttaggtaaatggagcatacc |
815 |
Q |
| |
|
||||||||| |||||||| ||||||| || | |||||||||||||| ||||||||| |||||| |||||||| | || || |||||| |||||||| |
|
|
| T |
32160417 |
tttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggggctatacataaatgaagcatacc |
32160318 |
T |
|
| Q |
816 |
tgaa |
819 |
Q |
| |
|
|||| |
|
|
| T |
32160317 |
tgaa |
32160314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 749 - 815
Target Start/End: Original strand, 41403988 - 41404054
Alignment:
| Q |
749 |
tttgccacatgtcttgcatctaaagtctaaatagactaaattgaactttaggtaaatggagcatacc |
815 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
41403988 |
tttgtcacatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatggagcatacc |
41404054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 716 - 819
Target Start/End: Complemental strand, 17737084 - 17736981
Alignment:
| Q |
716 |
tttattaaagaaatctcagcccttaatctttgttttgccacatgtcttgcatctaaagtctaaatagactaaattgaactttaggtaaatggagcatacc |
815 |
Q |
| |
|
||||||||| |||||||| ||||||| | |||||||||||||||| |||||||| |||| |||||||| ||| ||| ||||||||||||||| |
|
|
| T |
17737084 |
tttattaaataaatctcaacccttaaattgaattttgccacatgtctttcatctaaaactaaaatggactaaatagaatattacctaaatggagcatacc |
17736985 |
T |
|
| Q |
816 |
tgaa |
819 |
Q |
| |
|
|||| |
|
|
| T |
17736984 |
tgaa |
17736981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University