View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_13 (Length: 435)
Name: NF10041_low_13
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 443469 - 443869
Alignment:
| Q |
19 |
cttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgt |
116 |
Q |
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| T |
443469 |
cttgtgactctgtgggagctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgt |
443568 |
T |
|
| Q |
117 |
ttggttacatgcatgttttaaaatcttaccttaggtagtttaagcctaattatgattatgtatttttatttcttaggatcaagacagaagctttatcttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
443569 |
ttggttacatgcatgttttaaaatcttaccttaggtagtttaagcctaattatgattatgtatttttatttcttaggatcaagacagaagctttatcttt |
443668 |
T |
|
| Q |
217 |
tctacttgagaacaagaagcagattatagaaattgatgattcagacagtgatgatgaaccaacagagtcacctcaggctatcatccttgataaggtgaga |
316 |
Q |
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| T |
443669 |
tctacttgagaacaagaagcagattatagaaattgatgattcagacagtgatgatgaaccaacagagtcacctcaggctatcatccttgataaggtgaga |
443768 |
T |
|
| Q |
317 |
ttgaataataaagctttgcatgaaagtcnnnnnnnnnnnnnnnnatttagacagtgatagcttcattcttggcatgcagtcggagaaactaagctcaacc |
416 |
Q |
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| T |
443769 |
ttgaataataaagctttgcatgaaagtc-------tttttttttatttagacagtgatagcttcattcttggcatgcagtcggagaaactaagctcaacc |
443861 |
T |
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| Q |
417 |
aatttcat |
424 |
Q |
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|||||||| |
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| T |
443862 |
aatttcat |
443869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 465452 - 465379
Alignment:
| Q |
19 |
cttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
90 |
Q |
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||||||| ||||||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
465452 |
cttgtgattctgtggaagctttacaagagggaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
465379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 444684 - 444754
Alignment:
| Q |
19 |
cttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcac |
87 |
Q |
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||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
444684 |
cttgtgattctgtggcggctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgctatttgcac |
444754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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