View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_14 (Length: 432)
Name: NF10041_low_14
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 35 - 422
Target Start/End: Complemental strand, 47058270 - 47057883
Alignment:
| Q |
35 |
aattcatactgactattgagaaatgattaagatgtgtggtaaaacgaagcagacatgaaaagtttagatatggctctaaaatatgtgttcactttctctg |
134 |
Q |
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| T |
47058270 |
aattcatactgactattgagaaatgattaagatttgtggtaaaacgaagcagacatgaaaagtttagatatggctctaaaatatgtgttcactttctctg |
47058171 |
T |
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| Q |
135 |
ggcaatcaaattagataattattgtgatggtgaaatttatacttgaaaacctaaagcttgaatgtgtcatgtcacttcttgcagacactaaaactgcaag |
234 |
Q |
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| T |
47058170 |
ggcaatcaaattagataattattgtgatggtgaaatttatacttgaaaacctaaagcttgaatgtgtcatgtcacttcttgcagacactaaaactgcaag |
47058071 |
T |
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| Q |
235 |
atcaagatttcattggagaggccagttgcaatttatcagagatcagcatcaattgataaccatgttaaattgnnnnnnnncccaaatatttctcattatt |
334 |
Q |
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| T |
47058070 |
atcaagatttcattggagaggccagttgcaatttatcagagatcagcatcaattgataaccatgttaaattgaaaaaaaacccaaatatttctcattatt |
47057971 |
T |
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| Q |
335 |
gcaatttctatgttggtatattgaataaataatctcatacggcatgcataattaagattatggactttgtgtgacatttgtgtctctg |
422 |
Q |
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| T |
47057970 |
gcaatttctatgttggtatattgaataaataatctcatacggcatgcataattaagattatggactttgtgtgacattagtgtctctg |
47057883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 47075564 - 47075527
Alignment:
| Q |
384 |
aattaagattatggactttgtgtgacatttgtgtctct |
421 |
Q |
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| T |
47075564 |
aattaagattatagactttgtgtgacattggtgtctct |
47075527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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