View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10041_low_15 (Length: 400)
Name: NF10041_low_15
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_15 |
 | |
|
| [»] scaffold0642 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0642 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 394
Target Start/End: Complemental strand, 7222 - 6835
Alignment:
| Q |
21 |
tccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaatttta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7222 |
tccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaatttta |
7123 |
T |
|
| Q |
121 |
actaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattactttg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7122 |
actaagaaagggacaacaaacaattagatagccaaaatggtttcactaaagagatgtcggcataactaatattaccaaataatgctccttgattactttg |
7023 |
T |
|
| Q |
221 |
aatcttcaatcacgatccatggcatttta--------------ggatgcatttcagatannnnnnnccactaattttctatcagcaggaatccaagtgct |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7022 |
aatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaagtgct |
6923 |
T |
|
| Q |
307 |
tctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctctgctt |
394 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6922 |
tctgaagttttgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgctt |
6835 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 394
Target Start/End: Complemental strand, 17135 - 16748
Alignment:
| Q |
21 |
tccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaatttta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17135 |
tccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaatttta |
17036 |
T |
|
| Q |
121 |
actaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattactttg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17035 |
actaagaaagggacaacaaacaattagatagccaaaatggtttcactaaagagatgtcggcataactaatattaccaaataatgctccttgattactttg |
16936 |
T |
|
| Q |
221 |
aatcttcaatcacgatccatggcatttta--------------ggatgcatttcagatannnnnnnccactaattttctatcagcaggaatccaagtgct |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16935 |
aatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaagtgct |
16836 |
T |
|
| Q |
307 |
tctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctctgctt |
394 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16835 |
tctgaagttttgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgctt |
16748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 394
Target Start/End: Original strand, 21847 - 22234
Alignment:
| Q |
21 |
tccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaatttta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21847 |
tccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaatttta |
21946 |
T |
|
| Q |
121 |
actaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattactttg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21947 |
actaagaaagggacaacaaacaattagatagccaaaatggtttcactaaagagatgtcggcataactaatattaccaaataatgctccttgattactttg |
22046 |
T |
|
| Q |
221 |
aatcttcaatcacgatccatggcatttta--------------ggatgcatttcagatannnnnnnccactaattttctatcagcaggaatccaagtgct |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22047 |
aatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaagtgct |
22146 |
T |
|
| Q |
307 |
tctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctctgctt |
394 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22147 |
tctgaagttttgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgctt |
22234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 50727 - 51116
Alignment:
| Q |
19 |
aatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50727 |
aatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattt |
50826 |
T |
|
| Q |
119 |
taactaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattactt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
50827 |
taactaagaaagggacaacaaacaattagatagccaaaatggtttcactaaagagatgtcgacataactaatattaccaaataatgctccttgattactt |
50926 |
T |
|
| Q |
219 |
tgaatcttcaatcacgatccatggcatttta--------------ggatgcatttcagatannnnnnnccactaattttctatcagcaggaatccaagtg |
304 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50927 |
tgaatcttcaatcatgatccatggcattttaggaatctttgcggtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaagtg |
51026 |
T |
|
| Q |
305 |
cttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctctgctt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51027 |
cttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgctt |
51116 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 44498841 - 44498452
Alignment:
| Q |
19 |
aatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498841 |
aatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattt |
44498742 |
T |
|
| Q |
119 |
taactaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattactt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44498741 |
taactaagaaagggacaacaaacaattagatagccaaaatggtttcactaaagagatgtcgacataactaatattaccaaataatgctccttgattactt |
44498642 |
T |
|
| Q |
219 |
tgaatcttcaatcacgatccatggcatttta--------------ggatgcatttcagatannnnnnnccactaattttctatcagcaggaatccaagtg |
304 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44498641 |
tgaatcttcaatcatgatccatggcattttaggaatctttgcggtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaagtg |
44498542 |
T |
|
| Q |
305 |
cttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctctgctt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44498541 |
cttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgctt |
44498452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 3381430 - 3381054
Alignment:
| Q |
19 |
aatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3381430 |
aatccagcaaaaggtgcaaatacaaatttgtatctaaaatagttaacccagcccttacatatttcatacaaaatatgacaactccataaatggaaaattt |
3381331 |
T |
|
| Q |
119 |
taactaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattactt |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
3381330 |
taact----------caacaaacaattagatagccaaaatggtttcactaaagacatgtcggcataactaatattaccaaacaatgctccttgattactt |
3381241 |
T |
|
| Q |
219 |
tgaatcttcaatcacgatccatggcattttagga-----------tgcatttcagatannnnnnnccactaattttctatcagcaggaatccaagtgctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381240 |
tgaatcttcaatcacgatccatggcattttaggactcgaggtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaagtgctt |
3381141 |
T |
|
| Q |
308 |
ctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctctgctt |
394 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3381140 |
ctgaagttctgatatgtgtttggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgctt |
3381054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 273 - 394
Target Start/End: Complemental strand, 15709112 - 15708991
Alignment:
| Q |
273 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15709112 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttttgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgag |
15709013 |
T |
|
| Q |
373 |
tatgcacaatccttctctgctt |
394 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
15709012 |
tatgcacaatccttctttgctt |
15708991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 314 - 394
Target Start/End: Original strand, 26795723 - 26795803
Alignment:
| Q |
314 |
ttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctctgctt |
394 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26795723 |
ttctgatatgtgtatggcagttaaaacctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgctt |
26795803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 30111893 - 30112048
Alignment:
| Q |
19 |
aatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattt |
118 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
30111893 |
aatccagcaaaagttacaaatacaaatttgtatccaaaatagttaactcagcccttacattattcacacaaaatatgacaaat-cataaatggaaaattt |
30111991 |
T |
|
| Q |
119 |
taactaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacat |
175 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
30111992 |
caactacgaaagggtgaacaaaacattagatagccaaaatgatttcactaaagacat |
30112048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 30112132 - 30112170
Alignment:
| Q |
273 |
ccactaattttctatcagcaggaatccaagtgcttctga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30112132 |
ccactaattttctatcagcaggaatccaagtgcttctga |
30112170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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