View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_16 (Length: 388)
Name: NF10041_low_16
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 370
Target Start/End: Original strand, 3907405 - 3907755
Alignment:
| Q |
15 |
tgttgttcgaggggatatatgtttggcgtctttgttggtttttctggtggttatgtatgatttcagctcacttaccatgtggtactttgttagatgcaca |
114 |
Q |
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| T |
3907405 |
tgttgttcgaggggatatatgtttggcgtctttgttggtttttctggtggttatgtatgatgtcagctcacttaccatgtggtactttgttagatgcaca |
3907504 |
T |
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| Q |
115 |
aattacacttattgtaaatattttttatgcttgtatatttattttggtttgcaaaatggctgtaaattttagatagattcgcttatgtatatcaatttat |
214 |
Q |
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| T |
3907505 |
aattacacttattgtaaatattttttatgcttgtatatttattttggtttgtgaaatggctgtaaattttagatagattcgcttatgtatatcaatttat |
3907604 |
T |
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| Q |
215 |
ttgggttagttacttgggttttattttgggacgtcgaaacgtctcattttaatttatagtagtatcaagcaatctcattccnnnnnnnttttgctaaaca |
314 |
Q |
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| T |
3907605 |
ttgggttagttacttaggttttattttgggacgtcgaaacgtctcat-----tttatagtagtatcaagcaatctcattccaaattttttttgcttaaca |
3907699 |
T |
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| Q |
315 |
aaatacagcatacatgactaaaaagtcattgaatcagaacaactcaaatctgtagt |
370 |
Q |
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| T |
3907700 |
aaatatagcatacatgactaaaaagtcattgaagcagaacaactcaaatctgtagt |
3907755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 3904397 - 3904464
Alignment:
| Q |
171 |
tggctgtaaattttagatagattcgcttatgtatatcaatttatttgggttagttacttgggttttat |
238 |
Q |
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| T |
3904397 |
tggctgtaaatattagatacattcgcttatgtatatcaatttattttggttagttacttaggttttat |
3904464 |
T |
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