View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10041_low_17 (Length: 373)

Name: NF10041_low_17
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10041_low_17
NF10041_low_17
[»] chr4 (35 HSPs)
chr4 (7-357)||(2825739-2826090)
chr4 (7-357)||(31050434-31050787)
chr4 (79-329)||(35341141-35341391)
chr4 (14-320)||(8254990-8255298)
chr4 (14-320)||(8268408-8268716)
chr4 (14-287)||(30964404-30964675)
chr4 (50-207)||(25753171-25753327)
chr4 (14-179)||(53823375-53823539)
chr4 (14-257)||(4305688-4305932)
chr4 (75-262)||(41117838-41118024)
chr4 (144-262)||(49528164-49528282)
chr4 (14-179)||(2061692-2061856)
chr4 (25-281)||(19815071-19815331)
chr4 (74-311)||(30167384-30167622)
chr4 (48-110)||(49747524-49747586)
chr4 (213-320)||(8705954-8706061)
chr4 (62-182)||(38637184-38637302)
chr4 (34-117)||(22811175-22811258)
chr4 (14-117)||(46698800-46698903)
chr4 (38-111)||(35800476-35800549)
chr4 (20-261)||(48098302-48098542)
chr4 (34-283)||(19673084-19673332)
chr4 (47-109)||(21387227-21387289)
chr4 (267-320)||(20464808-20464861)
chr4 (22-103)||(39421042-39421123)
chr4 (47-111)||(6599966-6600030)
chr4 (61-112)||(16501741-16501792)
chr4 (144-283)||(16832867-16833010)
chr4 (61-134)||(38929837-38929910)
chr4 (48-104)||(2165505-2165560)
chr4 (14-104)||(19311371-19311459)
chr4 (47-117)||(36962631-36962700)
chr4 (62-104)||(39041302-39041344)
chr4 (62-100)||(40813813-40813851)
chr4 (61-97)||(53756766-53756802)
[»] chr1 (29 HSPs)
chr1 (7-357)||(27031614-27031965)
chr1 (7-357)||(46814240-46814592)
chr1 (7-352)||(7857609-7857955)
chr1 (7-357)||(24658885-24659236)
chr1 (14-320)||(24449740-24450048)
chr1 (14-309)||(5389243-5389539)
chr1 (14-320)||(46692629-46692937)
chr1 (23-320)||(5459133-5459432)
chr1 (14-281)||(31585608-31585878)
chr1 (9-196)||(24684413-24684601)
chr1 (30-310)||(41920431-41920718)
chr1 (14-172)||(30685864-30686022)
chr1 (29-232)||(6583117-6583319)
chr1 (14-149)||(17033549-17033685)
chr1 (14-182)||(27102153-27102321)
chr1 (34-114)||(9313307-9313387)
chr1 (14-104)||(42374126-42374216)
chr1 (144-231)||(31290921-31291008)
chr1 (14-104)||(4651743-4651833)
chr1 (38-104)||(34774858-34774923)
chr1 (47-112)||(38544758-38544823)
chr1 (34-118)||(40933846-40933930)
chr1 (49-104)||(15840940-15840995)
chr1 (14-117)||(19598599-19598702)
chr1 (20-130)||(20113523-20113633)
chr1 (28-134)||(32864559-32864665)
chr1 (50-95)||(27905411-27905456)
chr1 (144-287)||(32882465-32882604)
chr1 (64-104)||(42374049-42374089)
[»] chr2 (31 HSPs)
chr2 (7-345)||(7874247-7874586)
chr2 (55-357)||(5254260-5254559)
chr2 (22-357)||(14106295-14106634)
chr2 (7-357)||(14405155-14405506)
chr2 (30-357)||(387152-387482)
chr2 (14-320)||(39338676-39338983)
chr2 (213-342)||(7460839-7460969)
chr2 (30-309)||(10524076-10524360)
chr2 (37-285)||(10173425-10173673)
chr2 (34-233)||(1269466-1269665)
chr2 (81-285)||(16952229-16952434)
chr2 (81-285)||(17022894-17023099)
chr2 (81-285)||(17060200-17060405)
chr2 (14-258)||(37770517-37770759)
chr2 (63-178)||(2062901-2063015)
chr2 (61-179)||(22885087-22885204)
chr2 (58-155)||(16959989-16960085)
chr2 (62-137)||(4471934-4472009)
chr2 (72-262)||(7695984-7696172)
chr2 (61-116)||(15126426-15126481)
chr2 (59-182)||(34230209-34230331)
chr2 (34-100)||(9560820-9560886)
chr2 (62-111)||(4162041-4162090)
chr2 (50-103)||(23650384-23650437)
chr2 (59-171)||(13337282-13337393)
chr2 (305-357)||(14437040-14437092)
chr2 (14-109)||(17105374-17105470)
chr2 (61-112)||(33788652-33788703)
chr2 (81-163)||(17079199-17079281)
chr2 (62-112)||(25504929-25504979)
chr2 (145-195)||(41086735-41086785)
[»] chr3 (32 HSPs)
chr3 (7-349)||(23328131-23328475)
chr3 (7-357)||(40023344-40023696)
chr3 (31-357)||(45398776-45399105)
chr3 (37-309)||(19176488-19176764)
chr3 (19-311)||(2392325-2392619)
chr3 (50-351)||(43012374-43012677)
chr3 (14-320)||(20611746-20612053)
chr3 (37-309)||(9583876-9584148)
chr3 (102-263)||(21342586-21342748)
chr3 (14-310)||(34475576-34475872)
chr3 (62-287)||(17550968-17551190)
chr3 (22-257)||(45163824-45164063)
chr3 (37-262)||(14879421-14879646)
chr3 (82-320)||(47235729-47235969)
chr3 (19-311)||(2394089-2394366)
chr3 (11-117)||(14193900-14194006)
chr3 (50-285)||(31482883-31483119)
chr3 (14-229)||(25647647-25647863)
chr3 (61-182)||(33143899-33144020)
chr3 (151-308)||(7104942-7105100)
chr3 (138-320)||(53247987-53248172)
chr3 (22-134)||(37123353-37123465)
chr3 (58-134)||(47945713-47945789)
chr3 (14-112)||(14755285-14755381)
chr3 (47-163)||(1652856-1652971)
chr3 (156-224)||(14194038-14194105)
chr3 (62-117)||(5556581-5556636)
chr3 (61-100)||(20710740-20710779)
chr3 (66-117)||(39021291-39021342)
chr3 (48-114)||(24099345-24099411)
chr3 (34-104)||(30127245-30127315)
chr3 (213-311)||(30352260-30352356)
[»] chr7 (38 HSPs)
chr7 (7-301)||(34389918-34390214)
chr7 (7-357)||(35745595-35745952)
chr7 (14-320)||(47325695-47326003)
chr7 (15-187)||(6584873-6585046)
chr7 (14-310)||(41089569-41089866)
chr7 (14-287)||(38306224-38306499)
chr7 (14-262)||(8745116-8745363)
chr7 (9-270)||(33435067-33435329)
chr7 (14-311)||(3867079-3867378)
chr7 (22-287)||(5860131-5860398)
chr7 (19-311)||(37794957-37795251)
chr7 (14-287)||(10244145-10244420)
chr7 (34-283)||(3478335-3478583)
chr7 (73-311)||(44353382-44353623)
chr7 (14-285)||(3419500-3419774)
chr7 (14-286)||(24324640-24324916)
chr7 (75-341)||(48161817-48162083)
chr7 (213-342)||(6585045-6585176)
chr7 (14-103)||(25160778-25160867)
chr7 (14-117)||(6716751-6716854)
chr7 (47-163)||(46133246-46133363)
chr7 (176-320)||(31971944-31972089)
chr7 (34-170)||(1320777-1320913)
chr7 (34-103)||(42533281-42533350)
chr7 (34-117)||(16954636-16954719)
chr7 (47-117)||(47457037-47457107)
chr7 (35-104)||(38485540-38485609)
chr7 (62-117)||(13311850-13311905)
chr7 (34-89)||(44755609-44755664)
chr7 (59-103)||(9349757-9349801)
chr7 (47-129)||(12480882-12480965)
chr7 (34-117)||(16828951-16829034)
chr7 (62-100)||(27993568-27993606)
chr7 (61-117)||(48058669-48058725)
chr7 (62-96)||(25153231-25153265)
chr7 (62-100)||(46262151-46262189)
chr7 (7-103)||(23983151-23983247)
chr7 (63-111)||(17802837-17802885)
[»] chr8 (27 HSPs)
chr8 (7-357)||(15821151-15821504)
chr8 (134-350)||(35816026-35816240)
chr8 (82-357)||(38577561-38577840)
chr8 (14-311)||(31207181-31207479)
chr8 (14-311)||(9519462-9519762)
chr8 (14-310)||(24995214-24995513)
chr8 (21-306)||(32066119-32066406)
chr8 (14-310)||(37986678-37986976)
chr8 (14-196)||(36630800-36630983)
chr8 (73-311)||(20138448-20138689)
chr8 (14-172)||(34388965-34389123)
chr8 (30-285)||(12898120-12898376)
chr8 (19-172)||(16457421-16457572)
chr8 (58-262)||(17656873-17657076)
chr8 (57-311)||(41893221-41893475)
chr8 (14-182)||(10248504-10248671)
chr8 (39-171)||(12198030-12198162)
chr8 (39-171)||(12442458-12442590)
chr8 (14-134)||(30236126-30236246)
chr8 (30-104)||(10552248-10552321)
chr8 (51-117)||(15906686-15906752)
chr8 (213-310)||(34388827-34388923)
chr8 (38-103)||(32945732-32945797)
chr8 (47-104)||(35062453-35062510)
chr8 (51-179)||(17720660-17720786)
chr8 (267-320)||(36631042-36631095)
chr8 (213-249)||(22773663-22773699)
[»] chr5 (23 HSPs)
chr5 (14-310)||(34378061-34378359)
chr5 (14-284)||(698324-698596)
chr5 (22-320)||(29087452-29087750)
chr5 (21-320)||(18593213-18593514)
chr5 (21-262)||(8297438-8297678)
chr5 (22-113)||(7392050-7392141)
chr5 (14-195)||(14302368-14302548)
chr5 (14-262)||(7195112-7195356)
chr5 (14-134)||(13954232-13954351)
chr5 (14-182)||(33258833-33259000)
chr5 (54-179)||(22675278-22675402)
chr5 (51-288)||(26045806-26046045)
chr5 (14-117)||(24072281-24072384)
chr5 (213-357)||(7161789-7161933)
chr5 (19-219)||(25991975-25992174)
chr5 (96-181)||(7162267-7162353)
chr5 (51-109)||(23426344-23426402)
chr5 (14-104)||(31721640-31721730)
chr5 (63-117)||(39184202-39184256)
chr5 (62-112)||(8730928-8730978)
chr5 (61-134)||(27713079-27713152)
chr5 (48-104)||(12046252-12046308)
chr5 (62-94)||(25341709-25341741)
[»] scaffold0068 (1 HSPs)
scaffold0068 (14-320)||(35585-35889)
[»] chr6 (17 HSPs)
chr6 (14-320)||(3117456-3117764)
chr6 (14-220)||(20701716-20701921)
chr6 (14-129)||(16510304-16510419)
chr6 (52-182)||(9224042-9224172)
chr6 (34-186)||(32935286-32935437)
chr6 (38-134)||(26216017-26216112)
chr6 (144-262)||(3880469-3880587)
chr6 (14-88)||(3880627-3880701)
chr6 (47-109)||(26534742-26534804)
chr6 (48-104)||(34105410-34105466)
chr6 (67-182)||(13423482-13423596)
chr6 (213-311)||(14663241-14663339)
chr6 (7-70)||(15132585-15132648)
chr6 (48-101)||(21266110-21266163)
chr6 (213-300)||(10541996-10542083)
chr6 (62-97)||(7546464-7546499)
chr6 (51-109)||(12794114-12794173)
[»] scaffold0050 (1 HSPs)
scaffold0050 (14-231)||(36670-36888)
[»] scaffold0200 (1 HSPs)
scaffold0200 (34-182)||(19366-19513)
[»] scaffold0119 (1 HSPs)
scaffold0119 (34-233)||(42037-42236)
[»] scaffold0343 (1 HSPs)
scaffold0343 (93-309)||(5747-5966)
[»] scaffold0063 (1 HSPs)
scaffold0063 (49-262)||(58125-58337)
[»] scaffold1613 (1 HSPs)
scaffold1613 (47-112)||(1037-1102)
[»] scaffold0620 (1 HSPs)
scaffold0620 (48-104)||(3827-3883)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 2825739 - 2826090
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||||||||| ||| ||    
T  2825739 tatggtgttctctggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtccggtgggccgatcatttttgattcgagatcgggaatcacct 2825838  T
Q  107 ctttggctcaatgtggtttttgggcttt-attttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctt 205  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  2825839 ctttggctcaatgtggtttttgggcttttattttgtactctttcggtggatcggaggtctagaggttgtggaagctgcatgttcattcggttaggagctt 2825938  T
Q  206 ttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctggggtgagtagtgacgatgggacgttgtggatactgtgt 305  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2825939 ttcgaaggtggttcagtttgggtgttgaagtttgggagttttattttgaggggtgttctctggggtgagtagtgacgatgggacgttgtggatactgcgt 2826038  T
Q  306 ttacagggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
    |||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  2826039 ttacagggtttgtttctgttaaggtgtttgtcttaggtgatgatgtgttttg 2826090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 31050787 - 31050434
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    ||||||||||| || ||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| || |    
T  31050787 tatggtgttctttgatgtaccgggggcgaggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcggaagttaggt 31050688  T
Q  107 ctttggctcaatgtggtttttgggcttta--ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagct 204  Q
    |||||| |  |  |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31050687 ctttggtttgagttggtttttgggcttttgtttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttaggagct 31050588  T
Q  205 tttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgtt-ctctggggtgagtagtgacgatgggacgttgtggatactgt 303  Q
    ||||||  |||||| || ||||||||||||||||||  |||||||||||||||||||| ||  ||||||||||||||||||||    | ||||||  |||    
T  31050587 tttcgattgtggctaagcttgggtgttgaagtctggctgttttattttgaggggtgttccttgggggtgagtagtgacgatggatgatggtggatgttgt 31050488  T
Q  304 gtttacagggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
    |||||||| ||||| ||||||| ||| ||  |||||||||| ||||||| ||||    
T  31050487 gtttacagtgtttgcttctgttgaggtgttcgtcttaggtggtgatgtgttttg 31050434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 79 - 329
Target Start/End: Complemental strand, 35341391 - 35341141
Alignment:
Q  79 acttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggcttta-ttttgtgctctttcagtggatcggaggtcgagaggttgtgga 177  Q
    |||||||||  |||||||| |||||||||||||||||||  |||||||||| ||||  |||||||||||||| ||||||||||| |||||||||||||||    
T  35341391 acttttgatccgagatcggaagtcagctctttggctcaagttggtttttggccttttgttttgtgctctttcggtggatcggagttcgagaggttgtgga 35341292  T
Q  178 agctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctggggtgagtag 277  Q
    |||||||||||||||| ||||  ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35341291 agctgcatgttcattcagttatgagcttttcgaatgtggctcagtttgg-tgttgaagtttgggagttttattttgaggggtgttctctggggtgagtag 35341193  T
Q  278 tgacgatgggacgttgtggatactgtgtttacagggtttgtttctgttaagg 329  Q
    ||||||||||  |||| ||||||||||||||||| |||||||| ||||||||    
T  35341192 tgacgatgggtggttgcggatactgtgtttacagtgtttgtttttgttaagg 35341141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 8254990 - 8255298
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||  |||||| | |||||| |||||| |    
T  8254990 ttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttctttgac 8255089  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    ||||  ||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||||  |||||| || ||  || |||||  ||| |||| ||    
T  8255090 tcaagttggtttttgggctttgttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaa 8255189  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     ||||||||| |||||||||   ||||| |||||||||||||| ||||||||| || ||||||||||||||||||||| || ||||||||||||||||||    
T  8255190 tgtggctcagcttgggtgttagggtctgtgagttttattttga-gggtgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttaca 8255288  T
Q  311 gggtttgttt 320  Q
    | | ||||||    
T  8255289 gtgcttgttt 8255298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 8268408 - 8268716
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||  |||||| | |||||| |||||| |    
T  8268408 ttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttctttgac 8268507  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    ||||  ||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||||  |||||| || ||  || |||||  ||| |||| ||    
T  8268508 tcaagttggtttttgggctttgttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaa 8268607  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     ||||||||| |||||||||   ||||| |||||||||||||| ||||||||| || ||||||||||||||||||||| || ||||||||||||||||||    
T  8268608 tgtggctcagcttgggtgttagggtctgtgagttttattttga-gggtgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttaca 8268706  T
Q  311 gggtttgttt 320  Q
    | | ||||||    
T  8268707 gtgcttgttt 8268716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 30964404 - 30964675
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||||||||||||||||| ||||| ||||||| ||| | |||| ||| |||||||||||||||| | ||||||||||| | |||||| |    
T  30964404 ttctctggtgtaccgagggcgaggggtgccctgctaatttggtactataatctgatgggccgatcacttttgattcgtgatcgggagtccgttctttgac 30964503  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    ||||  ||||||||||| ||| | |||||||||||  |||| |||||||||| |||| |||||  ||||||||| ||||||||||||  ||| |||| ||    
T  30964504 tcaagttggtttttgggttttgtgttgtgctcttttggtggttcggaggtcgcgaggtttgtgatagctgcatgatcattcggttaggtgctcttcgaaa 30964603  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatggg 287  Q
     ||||| | | ||||||| |     |||||||||||||||||| ||||||||| || ||||||||||||| ||||||    
T  30964604 tgtggccctgcttgggtggt----actgggagttttattttga-gggtgttctttgtgggtgagtagtgatgatggg 30964675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 50 - 207
Target Start/End: Original strand, 25753171 - 25753327
Alignment:
Q  50 atttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttc 149  Q
    ||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||||  | | ||||||||||| | ||||  ||||||    
T  25753171 atttggtcctaaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttgattttgggctttttattgt-ttctttc 25753269  T
Q  150 agtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctttt 207  Q
     |||||||||||||||| |||  |||||||||| ||| || |||||  ||||||||||    
T  25753270 ggtggatcggaggtcgataggcagtggaagctgaatgatctttcggagagaagctttt 25753327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 53823539 - 53823375
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||||||||  || ||||||||| || ||||||||||  |||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  53823539 ttctctggtgtaccggaggtgaggggtgcccttctgatttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggc 53823440  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaag 179  Q
    ||||  | | ||||||| ||| || ||   |||||| || ||||| |||||||||||| |||||||    
T  53823439 tcaagtttggttttggg-ttttttatggtttctttcggttgatcgaaggtcgagaggtggtggaag 53823375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 4305688 - 4305932
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| |||| || ||||| ||||| ||||||| ||| ||||||||||  ||||||||||||||| |||||||||||| || |||||| |    
T  4305688 ttctctggtgtaccgggggcaagcggtgccctgctaatttggtactatagtctggtggggcgatcacttttgattcgagatcgggagttagttctttgtc 4305787  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcgaag 212  Q
    ||||  |||||||| |||||| | |||||||||||  ||||  | |||||||  ||| |||||  | ||||||| || |||||| ||  ||| ||||||     
T  4305788 tcaagttggtttttaggctttgtgttgtgctcttttggtggtccagaggtcgcaaggtttgtgataactgcatgatccttcggtgaggtgctcttcgaat 4305887  T
Q  213 gtggctcagtttgggtgttgaagtctgggagttttattttgaggg 257  Q
    ||||||||  |||||| ||   || ||||||||||||||| ||||    
T  4305888 gtggctcaacttgggtatttgggtttgggagttttattttcaggg 4305932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 262
Target Start/End: Complemental strand, 41118024 - 41117838
Alignment:
Q  75 gatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgt 174  Q
    |||||||||||||| |||||||| ||| || ||||||||||||  | | ||||||||||| | | ||  ||||||  |||||| ||||||||||||| ||    
T  41118024 gatcacttttgattcgagatcggaagtaagttctttggctcaaattaggttttgggctttttatggtt-tctttcgatggatcagaggtcgagaggtggt 41117926  T
Q  175 ggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgtt 262  Q
    |||||||| ||| || ||||  ||| |||||| || ||||||||||| || |||||| | |   |||||||||||| |||||||||||    
T  41117925 ggaagctgaatgatctttcgaataggagctttgcggaggtggctcaggtttggtgttcatgatcgggagttttattctgaggggtgtt 41117838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 49528164 - 49528282
Alignment:
Q  144 tctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggag 243  Q
    |||||| ||||||||||||||| ||||| ||||||| || ||| || ||||| |||||||||| || | |||| |||| || |||||| ||| ||| |||    
T  49528164 tctttcggtggatcggaggtcgggaggtggtggaagatgaatgatctttcggatagaagctttgcggatgtggttcagctttggtgttcaagactgagag 49528263  T
Q  244 ttttattttgaggggtgtt 262  Q
    |||||||||||||||||||    
T  49528264 ttttattttgaggggtgtt 49528282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 2061856 - 2061692
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||||| ||| || ||||||||| ||  ||||||| | |||||||||||||| | |||||||||||||| ||||| | ||||||| |||||||     
T  2061856 ttctctggtgtatcgaaggtgaggggtgccctcttgatttgatcctaaagtctggtgggctgatcacttttgattcgagattgagagtcagttctttgga 2061757  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaag 179  Q
    ||| | | | ||||||||||| |  ||   |||||| ||||||||||||||||||||| |||||||    
T  2061756 tcagttttgattttgggcttt-tgatgatttctttcggtggatcggaggtcgagaggtggtggaag 2061692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 281
Target Start/End: Complemental strand, 19815331 - 19815071
Alignment:
Q  25 accgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa-tgtggt 123  Q
    |||| ||| ||||||||| || ||| |||||| |||||||||||||||||||| |||||| ||| |||||| |||||||| |||||||||||| | |  |    
T  19815331 accgggggtgaggggtgcccttctgttttggtcctaaagtctggtggaccgattactttttattcgagatcaggagtcagttctttggctcaagtttaat 19815232  T
Q  124 t--tttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcag 221  Q
    |  ||| || |||  || ||| |||||| ||||| ||||||||||||| | |||||||||  ||| || ||||| ||| | ||||||  | |||||| |     
T  19815231 tagttttgggtttgattggtgttctttcggtggaccggaggtcgagagatggtggaagctaaatgatctttcggataggaacttttccgatgtggctaaa 19815132  T
Q  222 tttgggtgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtgac 281  Q
     || |||||||| | ||| |||||| || |||||  ||||||| | |||||||||||||||    
T  19815131 ctttggtgttgaggactgagagtttaatcttgagaagtgttctttgggggtgagtagtgac 19815071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 74 - 311
Target Start/End: Complemental strand, 30167622 - 30167384
Alignment:
Q  74 cgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-tt 172  Q
    ||||||||||||||| ||||||||||||| | |||||| |||||  || |||||||| ||| | |||||||||||| ||||  ||||||||| |||| ||    
T  30167622 cgatcacttttgattcgagatcgggagtcggttctttgactcaagttgatttttggggtttgtgttgtgctctttcggtggtccggaggtcgcgaggttt 30167523  T
Q  173 gtggaagctgcatgttcattcggttagaagcttttcg-aaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-ggg 270  Q
     ||  |||||||||  | ||||||||   ||| |||| || ||||| ||  ||||||||||  || ||||||||||||||||| ||||||||| || |||    
T  30167522 atgatagctgcatgacccttcggttaagcgctcttcgaaatgtggcccaacttgggtgttggggtatgggagttttattttga-gggtgttctttgtggg 30167424  T
Q  271 tgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
    ||||| |||||| | ||  || |||||||| ||||||||||    
T  30167423 tgagtggtgacg-ttggcggtggtggataccgtgtttacag 30167384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 49747524 - 49747586
Alignment:
Q  48 tgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctcttt 110  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| ||||||| |||||    
T  49747524 tgatttggttctaaagtctggtgagccgatcacttttgatttgagatcgagagtcagttcttt 49747586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 320
Target Start/End: Complemental strand, 8706061 - 8705954
Alignment:
Q  213 gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
    ||||||||| ||||||||||  ||||  ||||||||||||||||| |||||| || ||||| ||||||||||||||  || |||||||||||||||||||    
T  8706061 gtggctcagcttgggtgttggggtctaagagttttattttgaggg-tgttctttgtgggtgggtagtgacgatgggcagtggtggatactgtgtttacag 8705963  T
Q  312 ggtttgttt 320  Q
     | ||||||    
T  8705962 tgcttgttt 8705954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 182
Target Start/End: Complemental strand, 38637302 - 38637184
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggag 161  Q
    ||||||| || |||||||||||||||| ||||||||||||||  ||||||||| || || | ||||||||||| || ||   |||||  |||||||||||    
T  38637302 agtctggcgggccgatcacttttgattcgagatcgggagtcaattctttggcttaa-gtaggttttgggcttt-ttatggtttcttttggtggatcggag 38637205  T
Q  162 gtcgagaggttgtggaagctg 182  Q
    |||||||||| ||||||||||    
T  38637204 gtcgagaggtggtggaagctg 38637184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 22811258 - 22811175
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa 117  Q
    |||| |||| || ||||||||||  ||||||||||||| ||||||| |||| ||| ||||||||||||||| ||||||||||||    
T  22811258 gaggagtgcccttctgatttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagttctttggctcaa 22811175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 46698903 - 46698800
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||| |||||||| | ||||||| || |||||||||| ||  |||||||||| |||||  ||||||||| ||||||||||||||| |||||||     
T  46698903 ttctttggtggaccgagggtgtggggtgcccttctgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagttctttggt 46698804  T
Q  114 tcaa 117  Q
    ||||    
T  46698803 tcaa 46698800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 35800476 - 35800549
Alignment:
Q  38 ggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttg 111  Q
    ||||| || ||||||||||||| |||||||||| ||||||| ||||||||| |||||||| |||||| ||||||    
T  35800476 ggtgcccttctgatttggttctgaagtctggtgaaccgatcgcttttgattcgagatcggaagtcagttctttg 35800549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 48098302 - 48098542
Alignment:
Q  20 ggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatg 119  Q
    ||||||||||||| ||| ||||| || ||||||||||  ||||| | | ||| || |||||||||| || ||||||||||||||| |  |||| | ||      
T  48098302 ggtgtaccgagggtgagaggtgcccttctgatttggtcataaagcccgatgggcctatcacttttgtttcgagatcgggagtcagtttgttggattaagt 48098401  T
Q  120 tggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctc 219  Q
    | | ||||||||||| | | ||  ||||||  ||||||| |||||||||||| ||||||| || | | || ||| | ||| ||||||||| | |||||||    
T  48098402 ttggttttgggctttttatagt-ttctttcgatggatcgaaggtcgagaggtggtggaagatgaacgatctttcagataggagcttttcggatgtggctc 48098500  T
Q  220 agtttgggtgttgaagtctgggagttttattttgaggggtgt 261  Q
    |  || |||||| ||| ||||||||||  |||| ||||||||    
T  48098501 aactttggtgtttaagactgggagtttattttttaggggtgt 48098542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 283
Target Start/End: Original strand, 19673084 - 19673332
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctt 133  Q
    ||||||||| || ||| |||||| |||||||||||||||||  || ||||| ||| |||||| |||||||| ||||||||||||  |   ||||||| ||    
T  19673084 gaggggtgcccttctgttttggtcctaaagtctggtggaccattccctttt-attcgagatcaggagtcagttctttggctcaagtttagttttggg-tt 19673181  T
Q  134 tattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttga 233  Q
    |  || ||| |||||| ||||||||  |||||| || | |||||||||  ||| |  || || ||  | ||||||| | |||||| |  || ||||||||    
T  19673182 ttgttggtgttctttcggtggatcgacggtcgatagatggtggaagctaaatgatattttggatatgaacttttcggatgtggctaaactttggtgttga 19673281  T
Q  234 agtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacga 283  Q
     | ||| |||||| ||||||||| ||||||| | |||||||||||||||||    
T  19673282 ggactgagagtttaattttgaggagtgttctttgggggtgagtagtgacga 19673332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 21387289 - 21387227
Alignment:
Q  47 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctt 109  Q
    |||||||||| ||  ||||||||||||||||||||||||||| |||||||| |||||| ||||    
T  21387289 ctgatttggtgctggagtctggtggaccgatcacttttgattcgagatcggaagtcagttctt 21387227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 20464808 - 20464861
Alignment:
Q  267 ggggtgagtagtgacgatgggacgttgtggatactgtgtttacagggtttgttt 320  Q
    |||||||||||||||||||||  || |||||||| |||||||||||||||||||    
T  20464808 ggggtgagtagtgacgatgggcggtggtggataccgtgtttacagggtttgttt 20464861  T

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Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 39421123 - 39421042
Alignment:
Q  22 tgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtca 103  Q
    ||||| ||||| ||||||||| || ||||| ||||  || || ||||||| |||||||||||||||| ||||||||||||||    
T  39421123 tgtactgagggtgaggggtgcccttctgatatggtcttatagcctggtgggccgatcacttttgattcgagatcgggagtca 39421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 6600030 - 6599966
Alignment:
Q  47 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttg 111  Q
    ||||||||| |||| |||||||||| |||||| ||||||||| ||||||||||||| | ||||||    
T  6600030 ctgatttggctctagagtctggtgggccgatcgcttttgattagagatcgggagtcggttctttg 6599966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 16501741 - 16501792
Alignment:
Q  61 aagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttgg 112  Q
    |||| |||||| |||||| ||||||||| |||||||||||||||||||||||    
T  16501741 aagtttggtgggccgatcgcttttgattcgagatcgggagtcagctctttgg 16501792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 283
Target Start/End: Complemental strand, 16833010 - 16832867
Alignment:
Q  144 tctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggag 243  Q
    ||||||||||| ||||| ||| ||||||  | ||||||| ||| || || || ||  ||||||||| | ||||||||  || |||||| ||| ||| |||    
T  16833010 tctttcagtggttcggaagtcaagaggtgattgaagctgaatgatctttgggatatgagcttttcggatgtggctcaactttggtgttcaagactgtgag 16832911  T
Q  244 ttttattttgaggggtg----ttctctggggtgagtagtgacga 283  Q
    ||| |||||||||||||    |||| ||||||||||||||||||    
T  16832910 tttaattttgaggggtgttttttctttggggtgagtagtgacga 16832867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 38929837 - 38929910
Alignment:
Q  61 aagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggcttt 134  Q
    ||||||| ||| |||||||||||||||| ||||||  ||||||| ||||||||||||  | | |||||||||||    
T  38929837 aagtctgctgggccgatcacttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggcttt 38929910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 2165505 - 2165560
Alignment:
Q  48 tgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    ||||||| ||||| ||| |||||| |||||| |||||||||||||||||||||||||    
T  2165505 tgatttgtttctagagtttggtgg-ccgatcgcttttgatttgagatcgggagtcag 2165560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 19311459 - 19311371
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    ||||||| |||| || ||| ||||||||  || ||||||||||| ||| |||||||||  ||||||||||||||| |||| ||||||||||    
T  19311459 ttctatgatgtaacgggggtgaggggtgtccttctgatttggttttaa-gtctggtgggtcgatcacttttgattcgaga-cgggagtcag 19311371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 36962700 - 36962631
Alignment:
Q  47 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa 117  Q
    ||||||||||| |  |||||||||| ||||| |||||||||| |||||| |||||||| |||||| |||||    
T  36962700 ctgatttggttttggagtctggtgggccgattacttttgattcgagatcaggagtcag-tctttgactcaa 36962631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 39041344 - 39041302
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    |||||||||| |||||||||||||||| |||||| ||||||||    
T  39041344 agtctggtgggccgatcacttttgattcgagatcaggagtcag 39041302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 40813851 - 40813813
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgggag 100  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  40813851 agtctggtgggccgatcacttttgattcgagatcgggag 40813813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 53756766 - 53756802
Alignment:
Q  61 aagtctggtggaccgatcacttttgatttgagatcgg 97  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  53756766 aagtctggtgggccgatcacttttgattcgagatcgg 53756802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 27031965 - 27031614
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    ||||||||||| |||||||||| |||  |||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||||    
T  27031965 tatggtgttctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagct 27031866  T
Q  107 ctttggctcaatgtggtttttgggcttta-ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctt 205  Q
    |||||||||||  ||||||| ||| |||  |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||    
T  27031865 ctttggctcaagttggttttagggattttgttttgtgctctttcggtggatcggaggttgagaggttgtggaagctgcatgttcattcggttaagagctt 27031766  T
Q  206 ttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctggggtgagtagtgacgatgggacgttgtggatactgtgt 305  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||    
T  27031765 ttcgaatgtggctcagtttggatgttgaagtctgggagttttattttgaggggtgttctctggggtgagtagtgacgataggccgttatggatactgtgt 27031666  T
Q  306 ttacagggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||| ||||    
T  27031665 ttacagggtttgtttctgttaaggtgtccgtcttaggtggtgatgtgttttg 27031614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 46814592 - 46814240
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    ||||||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  46814592 tatggtgttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagct 46814493  T
Q  107 ctttggctcaatgtggtttttgggc-tttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctt 205  Q
     ||||||||||  |||||||| ||| ||| |||||||||||||| |||||||||| ||||||||||||  ||||||||| ||||||||| |||| |||||    
T  46814492 ttttggctcaagttggttttttggcttttgttttgtgctctttcggtggatcggatgtcgagaggttgcagaagctgcaagttcattcgattaggagctt 46814393  T
Q  206 ttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctgg-ggtgagtagtgacgatgggacgttgtggatactgtg 304  Q
    |||||| ||||||| |  ||||||||||||| |||||||||||||| |||||||||| | ||| ||||||||||||||||||   |||||||||||||||    
T  46814392 ttcgaatgtggctcggcgtgggtgttgaagtatgggagttttatttcgaggggtgttatttggaggtgagtagtgacgatggacggttgtggatactgtg 46814293  T
Q  305 tttacagggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||| ||||    
T  46814292 tttacagggtttgtttctgttaaggtgtctgtcttaggtggtgatgtgttttg 46814240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 352
Target Start/End: Original strand, 7857609 - 7857955
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    |||| |||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||    
T  7857609 tatgttgttctctggtgtactgggggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcaact 7857708  T
Q  107 ctttggctcaatgtggtttttgggcttta-ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctt 205  Q
    |||| ||| ||  |||||||||| ||||  |||||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||    
T  7857709 cttttgctgaagttggtttttggccttttgttttgtgctctttcggtggatcggtggtcgagaggttgtggaagctgcttgtccattcggttaggagctt 7857808  T
Q  206 ttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggacgttgtggatactgtg 304  Q
    ||  || |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||  |||||||  || |||    
T  7857809 ttgaaatgtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctatgggggtgagtagtggcgatgggtggttgtgg--accgtg 7857906  T
Q  305 tttacag-ggtttgtttctgttaaggcgtctgtcttaggtgatgatgtg 352  Q
    ||||||| | |||||||||||||||| ||| ||||||||||||||||||    
T  7857907 tttacagtgttttgtttctgttaaggtgtccgtcttaggtgatgatgtg 7857955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 24658885 - 24659236
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    ||||||||||| ||||||| || |||| |||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||    
T  24658885 tatggtgttctctggtgtatcgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtcagct 24658984  T
Q  107 ctttggctcaatgtggtttttgggcttt-attttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctt 205  Q
    |||||||| ||  |||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  24658985 ctttggctgaagttggtttttgggctttggttttgtgctctttcggtggatcggaggtcgagaggttgtggaagcatcatgttcattcggttagaagctt 24659084  T
Q  206 ttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggacgttgtggatactgtg 304  Q
    |||||| |||||||||  |||| ||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||||  ||| ||| |||||||    
T  24659085 ttcgaatgtggctcagcctgggagtt-aagtctgggagttttattttgaggggtgttatttgggggtgagtagtgacgatgggtggttatggttactgtg 24659183  T
Q  305 tttacagggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
    ||||||  |||||||||| |||||| |||  ||||||||| | ||||| ||||    
T  24659184 tttacaatgtttgtttcttttaaggtgtccatcttaggtggttatgtgttttg 24659236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 24450048 - 24449740
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||||||||||||| |||||  |||||| ||| ||| |||||| ||||||||||||||||||||||||| |||||| |||||| |    
T  24450048 ttctctggtgtaccgggggcgaggggtgccctgctattttggtactatagtttggtgggccgatcacttttgatttgagatcggaagtcagttctttgtc 24449949  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    | ||  ||||||||||| ||| | |||||||||||  ||||||||||||||| |||| |||||  || |||||| || |||||||||  ||| |||| ||    
T  24449948 ttaagttggtttttgggatttgtgttgtgctcttttggtggatcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctcttcgaaa 24449849  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     | ||||||| ||||||||||  |||| ||||||||||||||| ||||||| | || ||||||||||||||||||||  || |||||||| |||||||||    
T  24449848 tgcggctcagcttgggtgttggggtctaggagttttattttga-gggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttaca 24449750  T
Q  311 gggtttgttt 320  Q
    | | ||||||    
T  24449749 gtgcttgttt 24449740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 5389539 - 5389243
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||||||||||||| | ||| ||||||| ||| ||||||  || |||||||||||||||| ||||||||||||||| |||||| |    
T  5389539 ttctctggtgtaccgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcgggagtcagttctttgac 5389440  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggtt-gtggaagctgcatgttcattcggttagaagcttttcga-a 211  Q
    ||||  | ||||||||||||| | |||||||||||| |||| |||||||||| |||||| |||  |||| |||| || ||||||||   ||| ||||| |    
T  5389439 tcaagtttgtttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgata 5389340  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctggggtgagtagtgacgatgggacgttgtggatactgtgtttac 309  Q
     ||||||||| ||||||||||  ||||||||||||||||||||||| ||||||     ||||||||||||||||||  || |||||||| ||||||||    
T  5389339 tgtggctcagcttgggtgttggggtctgggagttttattttgaggg-tgttcttgtaagtgagtagtgacgatgggcggtggtggataccgtgtttac 5389243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 46692937 - 46692629
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||||||| ||||| ||||| |||||||  || |||||||||| |||||||||||||||| |||||||||||| || ||||||||    
T  46692937 ttctctggtgtaccgggggcgagaggtgccctgctaatttggtgatatagtctggtgggccgatcacttttgattcgagatcgggagttagttctttggc 46692838  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    ||||  ||||||||||||||| | |||||||||||| |||| |||||||||| |||| |||||  ||||||||  || | ||||||   ||| |||| ||    
T  46692837 tcaagttggtttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcattatcctccggttaagtgctcttcgaaa 46692738  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     ||||||||| ||||||||||  |||||| |||||||||| || ||||||||| || ||||||||||||||||||||  || || ||||  |||||||||    
T  46692737 tgtggctcagcttgggtgttggggtctggaagttttatttgga-gggtgttctttgtgggtgagtagtgacgatgggcggtggttgatatcgtgtttaca 46692639  T
Q  311 gggtttgttt 320  Q
    | | ||||||    
T  46692638 gtgcttgttt 46692629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 320
Target Start/End: Original strand, 5459133 - 5459432
Alignment:
Q  23 gtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtgg 122  Q
    |||||| ||||||||||| | ||||| ||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||  | ||||  ||||  ||     
T  5459133 gtaccgggggcgaggggtaccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaattatttgattcaagttga 5459232  T
Q  123 tttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagct-tttcgaaggtggctca 220  Q
    |||||||||||| | ||||||||||||||||| |||||||| | |||| |||||  ||||||||| || ||| |||||  ||| |||  || ||||||||    
T  5459233 tttttgggctttgtgttgtgctctttcagtggttcggaggttgcgaggtttgtgatagctgcatgatccttcagttaggtgctctttgaaatgtggctca 5459332  T
Q  221 gtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttacagggtttgtt 319  Q
    | ||||||||||  |||||| |||||||||||||  |||||||| || ||||||||||||||||||||  || |||||||| |||||||||| | |||||    
T  5459333 gcttgggtgttggggtctggaagttttattttga-tggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgattgtt 5459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 31585878 - 31585608
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||| ||||| ||||||||| ||||| ||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||| |||||| |    
T  31585878 ttctctggtgtactgagggtgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgac 31585779  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    ||||  ||||||||||||||| | ||||||| |||| |||| |||||||||| |||| |||||  ||||| ||| || || ||||||  ||| |||| ||    
T  31585778 tcaagttggtttttgggctttgtgttgtgctatttcggtgggtcggaggtcgcgaggtttgtgatagctgtatgatcctttggttaggtgctcttcgaaa 31585679  T
Q  212 ggtggctcagtttgggtgtt-gaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgac 281  Q
     |||||| || ||||||||| |  ||||| |||||||||||||| ||||||||| || ||||||||||||||    
T  31585678 tgtggctaagcttgggtgttgggggtctgagagttttattttga-gggtgttctttgtgggtgagtagtgac 31585608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 24684601 - 24684413
Alignment:
Q  9 tggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctct 108  Q
    |||| |||| |||||||||| ||||||||||||| || || ||||| |||||||||||||||| |||||||||||| ||| ||||||||  ||||| |||    
T  24684601 tggttttctctggtgtaccgggggcgaggggtgccctactaatttgattctaaagtctggtgggccgatcacttttaattcgagatcggatgtcagttct 24684502  T
Q  109 ttggctcaatgtggtttttgggc-tttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggt 196  Q
    ||| ||| |  |||||||||||| ||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||| || ||||||    
T  24684501 ttgactctagttggtttttgggcttttgttttgtgctctttcggtggatcggaggtcgcgaggttgtggaagatgcatgatccttcggt 24684413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 41920431 - 41920718
Alignment:
Q  30 gggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgg 129  Q
    ||||||||||||| ||||| ||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||  ||| ||||||    
T  41920431 gggcgaggggtgccctgctaatttggtactacagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggattttgg 41920530  T
Q  130 gctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgtt-----cattcggttagaagcttttc-gaaggtggctcagt 222  Q
    ||||| | |||||||||||| ||||||||||||||| |||| |||||  ||||||||| |     | ||| |||||  ||| |||   | |||||||||     
T  41920531 gctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatcctaaccttcagttaggtgctcttcatcatgtggctcagc 41920630  T
Q  223 ttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
    ||||||||||  |||| ||||||||||||||| ||||||| | || ||||||||||||||||| ||  || ||| |||| |||||||||    
T  41920631 ttgggtgttggggtcttggagttttattttga-gggtgttttttgtgggtgagtagtgacgataggcggtggtgaataccgtgtttaca 41920718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 30686022 - 30685864
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||  ||||||||||||| ||||| ||||||| ||| ||||| |||| |||||||||||||||||||||||||||||||| |||||| |    
T  30686022 ttctctggtgtacctggggcgaggggtgccctgctaatttggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcagttctttgac 30685923  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggtt 172  Q
    ||||  ||| ||||||||||| | |||||||||||| |||| |||||||||| ||||||    
T  30685922 tcaagttggcttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtt 30685864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 6583319 - 6583117
Alignment:
Q  29 agggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttg 128  Q
    |||| |||||||||  | |||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||  ||||||| ||| | | | ||||     
T  6583319 agggtgaggggtgcctttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcggcagtcaattctttggatcagttttggttttt 6583220  T
Q  129 ggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggt 228  Q
     ||||| || ||   |||||| ||| ||||||||||||||||| ||||||||||  || || ||| | ||| ||||||||| | | ||||||| || |||    
T  6583219 tgcttt-ttatggtttctttcggtgaatcggaggtcgagaggtggtggaagctgattgatctttcagataggagcttttcggatgcggctcagctttggt 6583121  T
Q  229 gttg 232  Q
    ||||    
T  6583120 gttg 6583117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 17033549 - 17033685
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||||||||| |||||| |   ||||||| || |||||||||| ||| |||||||||| |||||||||||||| | ||||||||||||||| |||||||     
T  17033549 ttctatggtgaaccgagagtagggggtgcccttctgatttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggt 17033648  T
Q  114 tcaa-tgtggtttttgggctttattttgtgctctttc 149  Q
    |||| | | | ||||||||||| ||||||| ||||||    
T  17033649 tcaagttttggttttgggcttttttttgtgttctttc 17033685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 27102153 - 27102321
Alignment:
Q  14 ttctatggtgtaccgagggcgagggg-tgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttgg 112  Q
    |||| |||||||||||||| |||||| ||| || ||| ||||||   |||||||   || |||||||||||||||| ||||||||||||||| |||||||    
T  27102153 ttctctggtgtaccgagggtgagggggtgcccttctgttttggtctcaaagtctaacgggccgatcacttttgattcgagatcgggagtcagttctttgg 27102252  T
Q  113 ctcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctg 182  Q
     ||||  | | ||||||||||| ||  |   |||||| ||||||||||||||||||||| ||||||||||    
T  27102253 atcaagtttggttttgggcttt-ttacggtttctttcggtggatcggaggtcgagaggtggtggaagctg 27102321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 9313387 - 9313307
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggct 114  Q
    ||||||||| || |||||||||| ||||||||| |||| | |||||||||||||| ||||||||||||||| |||||||||    
T  9313387 gaggggtgcccttctgatttggtcctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagttctttggct 9313307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 42374126 - 42374216
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    |||| ||||||||||||||   ||||||| || ||||||||||  |   |||||||||||||||| |||||||||||||||||||||||||    
T  42374126 ttctttggtgtaccgagggtttggggtgcccttctgatttggtcatgttgtctggtggaccgatcgcttttgatttgagatcgggagtcag 42374216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 31291008 - 31290921
Alignment:
Q  144 tctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgtt 231  Q
    |||||| ||||||||||||||||||||| ||||||| ||| || || ||||| ||| ||||||||| | ||||||||| || ||||||    
T  31291008 tctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 31290921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 4651743 - 4651833
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    |||| |||||||||| |||  |||||||| || |||| || ||||  |||||||| || |||||||||||||||| |||||||||||||||    
T  4651743 ttctctggtgtaccgggggtaaggggtgcccttctgaatttgttccgaagtctggggggccgatcacttttgattcgagatcgggagtcag 4651833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 34774858 - 34774923
Alignment:
Q  38 ggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    ||||| || |||||||||| |||| |||||||||||||||||||||||| | |||||||||||||||    
T  34774858 ggtgcccttctgatttggtcctaacgtctggtggaccgatcacttttga-tcgagatcgggagtcag 34774923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 38544823 - 38544758
Alignment:
Q  47 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttgg 112  Q
    ||||||||||  | ||||||||||| |||||| ||||||||| ||||||||||||||| |||||||    
T  38544823 ctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgg 38544758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 40933846 - 40933930
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaat 118  Q
    ||||||||  || ||| |||||||| ||||| ||||| ||||||| |||||||||||||||||| |||||| | ||||| |||||    
T  40933846 gaggggtgtcctcctgttttggttcgaaagtttggtgaaccgatcgcttttgatttgagatcggaagtcagttatttggttcaat 40933930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 15840995 - 15840940
Alignment:
Q  49 gatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    |||||| ||||| |||||||||| | |||||||||||||| |||||||||||||||    
T  15840995 gatttgtttctagagtctggtgggctgatcacttttgattcgagatcgggagtcag 15840940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 19598599 - 19598702
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||| ||||||||  |||||||| |  ||| || ||| || ||||||||||| |||||| ||||||||| ||||||| ||||||| |||||| |    
T  19598599 ttctctggtggaccgagggtaaggggtgcccgtctggttgggtcctgaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttgac 19598698  T
Q  114 tcaa 117  Q
    ||||    
T  19598699 tcaa 19598702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 20113633 - 20113523
Alignment:
Q  20 ggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatg 119  Q
    ||||||||| ||||||||||||| ||||| |||||||  || |||||| |||  |||||| ||||||||  ||||||||| |||| |||||  || ||      
T  20113633 ggtgtaccgggggcgaggggtgccctgctaatttggtattatagtctgctgggacgatcatttttgattcaagatcgggaatcagttctttaacttaagt 20113534  T
Q  120 tggtttttggg 130  Q
    |||||||||||    
T  20113533 tggtttttggg 20113523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 32864665 - 32864559
Alignment:
Q  28 gagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggttttt 127  Q
    ||||| ||||||||| || | |||||||| |||||| ||||||| || ||||||||| ||| |||||||| |||| | |||||| |||||  | | ||||    
T  32864665 gagggtgaggggtgcccttccgatttggtcctaaaggctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagtttggtttt 32864566  T
Q  128 gggcttt 134  Q
    |||||||    
T  32864565 gggcttt 32864559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 27905411 - 27905456
Alignment:
Q  50 atttggttctaaagtctggtggaccgatcacttttgatttgagatc 95  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||    
T  27905411 atttgggtttaaagtctggtggaccgatcacttttgattcgagatc 27905456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 287
Target Start/End: Original strand, 32882465 - 32882604
Alignment:
Q  144 tctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggag 243  Q
    |||||| ||| ||||||| |||| |||| ||| |||||  ||| || |||||| || ||||||||||| ||||||||| || |||||||| | |||||      
T  32882465 tctttcggtgaatcggagatcgacaggtggtgaaagcttaatgatctttcggtcaggagcttttcgaatgtggctcagctttggtgttgaggactggg-- 32882562  T
Q  244 ttttattttgaggggtgttc--tctggggtgagtagtgacgatggg 287  Q
         |||||||||||||||  |  |||||||||||||||||||||    
T  32882563 ----gttttgaggggtgttcgttggggggtgagtagtgacgatggg 32882604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 42374049 - 42374089
Alignment:
Q  64 tctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    |||||||||||| | |||||||||| |||||||||||||||    
T  42374049 tctggtggaccggttacttttgattcgagatcgggagtcag 42374089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 345
Target Start/End: Original strand, 7874247 - 7874586
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    ||||||||||| | ||||||||||||||| |||||| ||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||    
T  7874247 tatggtgttctctagtgtaccgagggcgatgggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagtcagct 7874346  T
Q  107 ctttggctcaatgtggtttttgggcttta-ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctt 205  Q
    ||||| |||||  |||||||||||||||  |||||||||| ||| |||||||||||||||||||||||||||| || | |||||||| |||||| |||||    
T  7874347 ctttgactcaagttggtttttgggcttttgttttgtgctcattcggtggatcggaggtcgagaggttgtggaaactacttgttcatttggttaggagctt 7874446  T
Q  206 ttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctggggtgagtagtgacgatgggacgttgtggatactgtgt 305  Q
    |||||| ||||||||| |||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||    
T  7874447 ttcgaatgtggctcagcttgggtgttgaagtcttggagttttattttgagggatgttctttggggtgagtagtgacgatgggtggttgtggatactgtgt 7874546  T
Q  306 ttacagggtttgtttctgttaaggcgtctgtcttaggtga 345  Q
    |||||| |||||||||||| |||| ||| |||||||||||    
T  7874547 ttacagtgtttgtttctgtcaaggtgtccgtcttaggtga 7874586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 55 - 357
Target Start/End: Original strand, 5254260 - 5254559
Alignment:
Q  55 gttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggcttta-ttttgtgctctttcagtg 153  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||| ||||  ||||||| |||||||  ||||||||| |||| |||    
T  5254260 gttctaaagtctagtgggccgatcacttttaatttgagatcgggagtctgctctttggttcaagttggttttcgggcttttgttttgtgctttttcggtg 5254359  T
Q  154 gatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttg 253  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||   |||||    
T  5254360 gatcggaggtcgagaggttgtggaagctgcatgttcattcggtttggagcttttcgaatgtggctcagtttgggtgttgaagtctgagagtt---ttttg 5254456  T
Q  254 aggggtgttctctggggtgagtagtgacgatgggacgttgtggatactgtgtttacagggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgc 353  Q
    ||||||||||| | ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||     
T  5254457 aggggtgttct-ttgggtgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttgtttctgttaaggtgtccgtcttaggtggtgatgtgt 5254555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 357
Target Start/End: Complemental strand, 14106634 - 14106295
Alignment:
Q  22 tgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgt- 120  Q
    |||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||  |||||||||||||||||||| | ||| | |     
T  14106634 tgtacccagggcgaggggtgccctgctgatttggtcctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagctctttagatcagtttt 14106535  T
Q  121 ggtttttgggcttta--ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggct 218  Q
    |||||||||| |||   |||||||||||||| ||||||| ||||||||||||||||||||| || ||| |||||||||||  |||||| |||| ||||||    
T  14106534 ggtttttgggtttttgtttttgtgctctttcggtggatcagaggtcgagaggttgtggaagttgtatgatcattcggttaagagctttacgaatgtggct 14106435  T
Q  219 cagtttgggtgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggacgttgtggatactgtgtttacagggtttg 317  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| |  |||||||||||||||||||||  |||||    
T  14106434 cagcttgggtgttgaagtctgagagttttattttgaggggtgttctttgggggtgagtagtgacgatgagtggttgtggatactgtgtttacaatgtttg 14106335  T
Q  318 tttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
    |||||||||||| ||| |||||||||| || |||| ||||    
T  14106334 tttctgttaaggtgtccgtcttaggtggtgttgtgttttg 14106295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 14405155 - 14405506
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    |||| |||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  14405155 tatgttgttctctggtgtaccgggggcgaggggtgct-tgatgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagct 14405253  T
Q  107 ctttggctcaatgtggtttttgggc-tttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctt 205  Q
    |||||||||||  |||||||||||| ||| |||||||||||||| ||||||| || |||||| |||||||||| ||||| ||||||| |||||| |||||    
T  14405254 ctttggctcaagttggtttttgggcttttgttttgtgctctttcggtggatcagaagtcgagtggttgtggaaactgcacgttcatttggttaggagctt 14405353  T
Q  206 ttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctct--ggggtgagtagtgacgatgggacgttgtggatactgt 303  Q
     ||| | |||||||   ||||||||||||||||||||||||||||||||||| |||||| |  ||||||||||||||| |||||   ||||||  |||||    
T  14405354 gtcgcatgtggctcgacttgggtgttgaagtctgggagttttattttgagggatgttcttttgggggtgagtagtgacaatgggtgattgtgg--actgt 14405451  T
Q  304 g-tttacagggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
    | |||| || |||| ||| |||||||| ||| |||||||||| ||||||| ||||    
T  14405452 gttttatagtgtttatttttgttaaggtgtccgtcttaggtggtgatgtgttttg 14405506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 30 - 357
Target Start/End: Original strand, 387152 - 387482
Alignment:
Q  30 gggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgg 129  Q
    ||||||||||||| ||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||||  |||||| |||||  |||||||||     
T  387152 gggcgaggggtgccctgctaatttggtactaaagtctggtgggctgatcacttttgatttgagatcgggagtcaattctttgactcaagttggtttttga 387251  T
Q  130 gcttt--attttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcga-aggtggctcagtttgg 226  Q
    |||||   |||||||||||||  ||||||||||||||  |||||| |||||||||||||||||||| || ||  ||| ||||| ||||||||||| ||||    
T  387252 gcttttgtttttgtgctcttttggtggatcggaggtcacgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgg 387351  T
Q  227 gtgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggacgttgtggatactgtgtttacagggtttgtttctgtt 325  Q
    ||||||  |||||||||||||||||||| ||||||||| | ||||||| |||||||||||||  || ||| ||  ||||||||||  | |||||| |||     
T  387352 gtgttggggtctgggagttttattttga-gggtgttctttgggggtgaatagtgacgatgggcggtggtgaattttgtgtttacaatgcttgtttttgtg 387450  T
Q  326 aaggcgtctgtcttaggtgatgatgtgctttg 357  Q
    |||| |||||| ||||||| ||||||| ||||    
T  387451 aaggagtctgttttaggtggtgatgtgttttg 387482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 39338983 - 39338676
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||||||||||||| ||||| ||||||| ||| |||||||||| |||||| ||||||||| ||||||||||||||| |||||| |    
T  39338983 ttctttggtgtaccgggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgac 39338884  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcgaa- 211  Q
    ||||  ||||||||||||||| | |||||||||||| ||||||||||||||| |||| |||||  ||||| ||| || |||||||||  ||| ||||||     
T  39338883 tcaagttggtttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaat 39338784  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     ||| ||||| ||||||||||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||||   | ||||||||| ||||||||    
T  39338783 tgtgactcagcttgggtgttgaggtctgggagttttattttga-gggtgttctttgtgggtgagtagtgacgatgggcgatggtggatact-tgtttaca 39338686  T
Q  311 gggtttgttt 320  Q
    | | ||||||    
T  39338685 gtgcttgttt 39338676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 213 - 342
Target Start/End: Original strand, 7460839 - 7460969
Alignment:
Q  213 gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctgggg-tgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |  |||||||||| |||||||||||    
T  7460839 gtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggatattgtgtttacag 7460938  T
Q  312 ggtttgtttctgttaaggcgtctgtcttagg 342  Q
     ||||||||||||||||| ||| ||||||||    
T  7460939 tgtttgtttctgttaaggtgtccgtcttagg 7460969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 30 - 309
Target Start/End: Original strand, 10524076 - 10524360
Alignment:
Q  30 gggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagc----tctttggctcaatgtggttt 125  Q
    ||||||| ||||| ||||  ||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||      |||||| |||||  ||||||    
T  10524076 gggcgagaggtgccctgccaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaatatattctttgactcaagttggttt 10524175  T
Q  126 ttgggctttattttgtgctctttcagtggatcggaggtcgagaggtt-gtggaagctgcatgttcattcggttagaagcttttcga-aggtggctcagtt 223  Q
    ||||||||| | |||||||||||| |||  |||||||||| |||||| |||  ||||||||| || |||||||||  ||| ||||| | ||||||||| |    
T  10524176 ttgggctttgtgttgtgctctttcggtgt-tcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgatatgtggctcagct 10524274  T
Q  224 tgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttac 309  Q
    |||||||||  || |||||||||||||| ||||| |||||| || ||||||||||||||||||||  || |||||||| ||||||||    
T  10524275 tgggtgttggggtttgggagttttatttggaggg-tgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttac 10524360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 37 - 285
Target Start/End: Complemental strand, 10173673 - 10173425
Alignment:
Q  37 gggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttat 136  Q
    |||||||||  || |||||| ||||||||| |||| |||||||||||||||| |||||||| ||| || | ||||||||||  | | |||||||||||      
T  10173673 gggtgctcttttgttttggtcctaaagtctagtgggccgatcacttttgattcgagatcggaagtaagttatttggctcaagtttggttttgggcttttg 10173574  T
Q  137 tttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagt 236  Q
    || ||| |||||| ||| ||||||||||||||||| ||||||| || ||| || || |  ||  ||||||||| | ||||||||| || |||||||| |     
T  10173573 ttggtgttctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagcttttcggatgtggctcagctttggtgttgagga 10173474  T
Q  237 ctgggagttttattttgaggggtgttctctggggtgagtagtgacgatg 285  Q
    ||| |||||| ||||||||| || |||| ||||||||||||||||||||    
T  10173473 ctgagagtttaattttgaggagtattctttggggtgagtagtgacgatg 10173425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 34 - 233
Target Start/End: Original strand, 1269466 - 1269665
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctt 133  Q
    ||||||||| || ||||||| || |||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||  | | ||||||| ||    
T  1269466 gaggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggatt 1269565  T
Q  134 tattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttc-attcggttagaagcttttcgaaggtggctcagtttgggtgttg 232  Q
    | || ||   |||||||||||||||||||||||||| | |||||||||| ||  ||  ||||| ||| ||||||||||| ||||||| | || |||||||    
T  1269566 t-ttatggtttctttcagtggatcggaggtcgagagttggtggaagctgaataatcttttcggataggagcttttcgaatgtggctctgctttggtgttg 1269664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 81 - 285
Target Start/End: Complemental strand, 16952434 - 16952229
Alignment:
Q  81 ttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagc 180  Q
    |||||||| ||||||||||| ||| ||||||||||||  | | |||||| | || ||| ||| |||||| ||||||||||||| ||||||| ||||||||    
T  16952434 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtggaagc 16952335  T
Q  181 tgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtg 279  Q
    |  | | || ||||| ||| ||||||||| | |||| |||  || |||||||| | |||||||||| |||| |||||||||||| | |||||||||||||    
T  16952334 taaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtg 16952235  T
Q  280 acgatg 285  Q
    ||||||    
T  16952234 acgatg 16952229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 81 - 285
Target Start/End: Complemental strand, 17023099 - 17022894
Alignment:
Q  81 ttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagc 180  Q
    |||||||| ||||||||||| ||| ||||||||||||  | | |||||| | || ||| ||| |||||| ||||||||||||| ||||||| ||||||||    
T  17023099 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtggaagc 17023000  T
Q  181 tgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtg 279  Q
    |  | | || ||||| ||| ||||||||| | |||| |||  || |||||||| | |||||||||| |||| |||||||||||| | |||||||||||||    
T  17022999 taaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtg 17022900  T
Q  280 acgatg 285  Q
    ||||||    
T  17022899 acgatg 17022894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 81 - 285
Target Start/End: Complemental strand, 17060405 - 17060200
Alignment:
Q  81 ttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagc 180  Q
    |||||||| ||||||||||| ||| ||||||||||||  | | |||||| | || ||| ||| |||||| ||||||||||||| ||||||| ||||||||    
T  17060405 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtggaagc 17060306  T
Q  181 tgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtg 279  Q
    |  | | || ||||| ||| ||||||||| | |||| |||  || |||||||| | |||||||||| |||| |||||||||||| | |||||||||||||    
T  17060305 taaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtg 17060206  T
Q  280 acgatg 285  Q
    ||||||    
T  17060205 acgatg 17060200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 37770759 - 37770517
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||||||| ||||||||| |  |||||||||| |||| || |||||| ||||||||||||||||   |||| |||||||  ||||| |     
T  37770759 ttctctggtgtaccgagggtgaggggtgcccatctgatttggtcctaaggtttggtgggccgatcacttttgattctggatcaggagtcaattctttaga 37770660  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaagg 213  Q
    ||||| | | ||||||||||  || ||   |||||| ||| |||||||||||||||||  ||||||||| ||| || ||| | ||  ||||||||  |||    
T  37770659 tcaattttggttttgggctt--ttatggtttctttcggtgaatcggaggtcgagaggtgttggaagctgaatgatctttcagatatgagcttttctgagg 37770562  T
Q  214 tggctcagtttgggtgttgaagtctgggagttttattttgagggg 258  Q
    |||||| | || |||||| | ||||| |||||| |||||||||||    
T  37770561 tggctcggctttggtgttcaggtctgtgagtttaattttgagggg 37770517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 2062901 - 2063015
Alignment:
Q  63 gtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggagg 162  Q
    ||||||||| |||||  ||||||||| ||||||||||||||||||||||||||||  | | ||||||||||| ||| ||| |||||| ||| | | ||||    
T  2062901 gtctggtgggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtgtaccagagg 2062999  T
Q  163 tcgagaggttgtggaa 178  Q
    | | ||||||||||||    
T  2063000 ttgtgaggttgtggaa 2063015  T

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Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 22885204 - 22885087
Alignment:
Q  61 aagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcgga 160  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||  | | ||||||| ||  ||| ||| |||||| ||||| | ||    
T  22885204 aagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtttggttttggg-ttgttttggtgttctttcggtggaccaga 22885106  T
Q  161 ggtcgagaggttgtggaag 179  Q
    ||| ||||||| |||||||    
T  22885105 ggttgagaggtggtggaag 22885087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 16959989 - 16960085
Alignment:
Q  58 ctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtgga 155  Q
    |||||||||||||| |||||| ||||||||| ||||||| ||||||| ||||||||||||  | | |||||||| |||||| ||| |||||| |||||    
T  16959989 ctaaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagtttggttttgggc-ttatttggtgttctttcggtgga 16960085  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 4471934 - 4472009
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttatt 137  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| ||||||  ||||  | ||||||||||||||||    
T  4471934 agtctggtgggccgatcgcctttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggctttatt 4472009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 262
Target Start/End: Original strand, 7695984 - 7696172
Alignment:
Q  72 accgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggt 171  Q
    ||||||||||||||||| || | |||||||||| ||||||||||||  | | ||||||||||  ||  |   |||||| |||||||| |||||| |||||    
T  7695984 accgatcacttttgattcgataccgggagtcagttctttggctcaagttaggttttgggctt--ttacggtttctttcggtggatcgaaggtcgggaggt 7696081  T
Q  172 tgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgtt 262  Q
     |||||||||| ||| || ||||| ||| || |||  | | ||||||||  || |||||| | | |  ||||||||||||| |||||||||    
T  7696082 ggtggaagctgaatgatctttcggataggagatttgaggatgtggctcaactttggtgttcaggaccaggagttttatttttaggggtgtt 7696172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 15126481 - 15126426
Alignment:
Q  61 aagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctca 116  Q
    ||||||||||| ||||||| |||||||| ||||||||||||| | |||||||||||    
T  15126481 aagtctggtgggccgatcatttttgattcgagatcgggagtcggttctttggctca 15126426  T

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Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 34230209 - 34230331
Alignment:
Q  59 taaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcg 158  Q
    |||||| || ||| ||||||| |||| ||| |||||| |||||||| ||||||| ||||  | | ||||||||||| | | ||  |||||| ||||||||    
T  34230209 taaagtttgatgggccgatcattttttattcgagatcaggagtcagttctttggatcaagtttgattttgggctttttgtggtt-tctttcggtggatcg 34230307  T
Q  159 gaggtcgagaggttgtggaagctg 182  Q
    ||||| ||||||| ||||||||||    
T  34230308 gaggttgagaggtggtggaagctg 34230331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 9560886 - 9560820
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggag 100  Q
    |||||||||  || |||||||  || ||||| ||||||||||||||||||||||| |||||||||||    
T  9560886 gaggggtgccttgatgatttgtgtcgaaagtttggtggaccgatcacttttgattcgagatcgggag 9560820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 4162090 - 4162041
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgggagtcagctctttg 111  Q
    |||||||||| |||||||||||||||| ||||||||||| ||||| ||||    
T  4162090 agtctggtgggccgatcacttttgattcgagatcgggagccagctttttg 4162041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 23650384 - 23650437
Alignment:
Q  50 atttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtca 103  Q
    ||||||||||| |||||||||| | |||| ||||||||| ||||||||||||||    
T  23650384 atttggttctagagtctggtgggctgatcgcttttgattcgagatcgggagtca 23650437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 171
Target Start/End: Original strand, 13337282 - 13337393
Alignment:
Q  59 taaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcg 158  Q
    ||||||||| ||| |||||||||||||||| || ||||| |||||| |||||| |||||  | | |||||| |||| || ||   |||||| |||||| |    
T  13337282 taaagtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagttaggttttggacttt-ttatggtttctttcggtggatag 13337380  T
Q  159 gaggtcgagaggt 171  Q
    |||||||||||||    
T  13337381 gaggtcgagaggt 13337393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 14437092 - 14437040
Alignment:
Q  305 tttacagggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
    ||||||| ||||||||||||||||| ||  |||||||||||||||||| ||||    
T  14437092 tttacagtgtttgtttctgttaaggtgttcgtcttaggtgatgatgtgatttg 14437040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 17105374 - 17105470
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcac-ttttgatttgagatcgggagtcagctctt 109  Q
    |||| |||||||||  ||| ||||||||| || |||||||||| || ||||||| ||| |||||||| |||||||| ||||||| || |||| ||||    
T  17105374 ttctttggtgtaccaggggtgaggggtgccctactgatttggtactgaagtctgatgggccgatcactttttgattcgagatcgagaatcagatctt 17105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 33788703 - 33788652
Alignment:
Q  61 aagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttgg 112  Q
    ||||||||||| |||||| ||||||||| ||||| ||||||||| |||||||    
T  33788703 aagtctggtgggccgatcgcttttgattcgagattgggagtcagttctttgg 33788652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 17079199 - 17079281
Alignment:
Q  81 ttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggt 163  Q
    |||||||| ||||||||||| ||| ||||||||||||  | | |||||| | || ||| ||| |||||| |||||||||||||    
T  17079199 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggt 17079281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 25504979 - 25504929
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgggagtcagctctttgg 112  Q
    ||||||||||||| ||| ||||| ||| ||||||||||||||| |||||||    
T  25504979 agtctggtggacctatcgcttttaattcgagatcgggagtcagttctttgg 25504929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 41086785 - 41086735
Alignment:
Q  145 ctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcgg 195  Q
    ||||| ||||||||||||||||||||| |||||||||| ||| || |||||    
T  41086785 ctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcgg 41086735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 349
Target Start/End: Complemental strand, 23328475 - 23328131
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    ||||||||||| |||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  23328475 tatggtgttctctggtgtaccgggggcgaggggtgccctgttgatttggttctaaagtttggtggaccgatcacttttgattcgagatcgggagttagct 23328376  T
Q  107 ctttggctcaatgtggtttttgggcttta-ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctt 205  Q
     ||||||||||  ||||||||| |||||  |||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||    
T  23328375 ttttggctcaagttggtttttgagcttttgttttgtgctctttcggtggatcggaggtcgagaggttgtggaagctccttgttcattcggttaggagctt 23328276  T
Q  206 ttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggacgttgtggatactgtg 304  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||  |||||||||| ||||    
T  23328275 ttcgaatgtggctcagcttgggtgttgaagtctgggagttttattttgagtggtgttctttgggggtgagtagtgacgatgggtggttgtggatattgtg 23328176  T
Q  305 tttacagggtttgtttctgttaaggcgtctgtcttaggtgatgat 349  Q
     |||||| ||||||||||||||||  ||| |||||||||| ||||    
T  23328175 cttacagtgtttgtttctgttaagaggtccgtcttaggtggtgat 23328131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 40023696 - 40023344
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    ||||||||||| | |||||||| ||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||   |    
T  40023696 tatggtgttctctagtgtaccgggggcgaggg-tgccctgctgattttgttttaaagtctggtggaccgatcacttttgattcgagatcgggagtcgatt 40023598  T
Q  107 ctttggctcaatgtggtttttgggcttta-ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctt 205  Q
    |||||||| ||  |||||||||||||||  |||||||||||||| ||||||| |||| || ||||||||||||||||||||||||||||||||| |||||    
T  40023597 ctttggcttaagttggtttttgggcttttgttttgtgctctttcggtggatcagaggacgggaggttgtggaagctgcatgttcattcggttaggagctt 40023498  T
Q  206 ttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttc-tctggggtgagtagtgacgatgggacgttgtggatactgtg 304  Q
    |||||| ||||||||| | |||||||| ||||||||||||||||||||||||| |||| | |||| ||||||||||||||||   ||||||||||| |||    
T  40023497 ttcgaatgtggctcagctagggtgttgtagtctgggagttttattttgaggggcgttcttttgggatgagtagtgacgatggatggttgtggataccgtg 40023398  T
Q  305 tttacag-ggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
    ||||||| | |||||||||||||||| |||||||||||||| ||||||| ||||    
T  40023397 tttacagtgttttgtttctgttaaggtgtctgtcttaggtggtgatgtgttttg 40023344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 31 - 357
Target Start/End: Original strand, 45398776 - 45399105
Alignment:
Q  31 ggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttggg 130  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||  | ||  |||||||||||    
T  45398776 ggcgaggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtcagctctttgatttaagttggtttttggg 45398875  T
Q  131 cttta-ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtg 229  Q
    ||||  |||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||  || ||||    
T  45398876 cttttgttttatgctctttcgatggatcggaggtcgagaggttgtggaagctgcatgttcattcggttatgagcttttcgaatgtggcgcaacttaggtg 45398975  T
Q  230 ttgaagtctgggagttttattttgaggggtgttc-tctggggtgagtagtgacgatgggacgttgtggatactgtgtttacag-ggtttgtttctgttaa 327  Q
    ||||||| |||||||| ||||||| ||||||||| |  ||||||||||||||||||||    ||||||||| ||||||||||| | ||||||||||||||    
T  45398976 ttgaagtttgggagttctattttgtggggtgttcgttgggggtgagtagtgacgatggatgattgtggatattgtgtttacagtgttttgtttctgttaa 45399075  T
Q  328 ggcgtctgtcttaggtgatgatgtgctttg 357  Q
    || ||| |||||||||| ||||||| ||||    
T  45399076 ggtgtccgtcttaggtggtgatgtgttttg 45399105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 37 - 309
Target Start/End: Original strand, 19176488 - 19176764
Alignment:
Q  37 gggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggc-ttta 135  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||  |||||||||||| |||     
T  19176488 gggtgccctgctaatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttttg 19176587  T
Q  136 ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttc--attcggttagaagcttttcg-aaggtggctcagtttgggtgttg 232  Q
     ||||||||||||  |||||||||||||||  ||||||||||||||||||| ||   |||||| ||  ||| |||| || ||||||||| |||||||| |    
T  19176588 atttgtgctcttttggtggatcggaggtcgcaaggttgtggaagctgcatgatccttttcggtcaggtgctcttcgtaatgtggctcagcttgggtgtcg 19176687  T
Q  233 aagtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggacgttgtggatactgtgtttac 309  Q
      ||||||| |||||||||||| ||||||||| | ||||||||||||||||||||   || |||||||||||||||||    
T  19176688 gggtctgggtgttttattttga-gggtgttctttaggggtgagtagtgacgatggatggtggtggatactgtgtttac 19176764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 2392619 - 2392325
Alignment:
Q  19 tggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaat 118  Q
    |||||||||| ||||||||||||| ||||| ||||||| ||| || |||||||||||||||||||||||| ||||| || |||||| |||||| || ||     
T  2392619 tggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagttctttgtcttaag 2392520  T
Q  119 gtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttc-gaaggtgg 216  Q
     ||||||||||||||| | |||||||||||| ||||||||||||||| |||| |||||  ||||||||| || ||||||||| | || |||  || ||||    
T  2392519 ttggtttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtgg 2392420  T
Q  217 ctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
    ||||| ||||||||||  |||| ||||||||||||||   |||||| | || ||||||||||||||||||||  || |||||||| ||||||||||    
T  2392419 ctcagcttgggtgttggggtctaggagttttattttg-taggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacag 2392325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 50 - 351
Target Start/End: Original strand, 43012374 - 43012677
Alignment:
Q  50 atttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggc-tttattttgtgctcttt 148  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||  ||||||||| || ||| |||||||||||||    
T  43012374 atttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgagcttttgttttgtgctcttt 43012473  T
Q  149 cagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcg-aaggtggctcagtttgggtgttgaagtctgggagtttt 247  Q
    | ||| ||| ||||||| ||||||||||||| |||||| || |||||| ||  ||| |||| || ||||||||| ||||||||||  |||| ||||||||    
T  43012474 cggtgaatcagaggtcgcgaggttgtggaagttgcatgatcgttcggtcaggtgctcttcgaaatgtggctcagcttgggtgttggggtctaggagtttt 43012573  T
Q  248 attttgaggggtgttctctgg-ggtgagtagtgacgatgggacgttgtggatactgtgtttacagggtttgtttctgttaaggcgtctgtcttaggtgat 346  Q
    | ||||| ||||||||| ||| ||||||||||| ||||||   |  |||||||| |||||||||  | |||||| ||| |||| |||||| |||| || |    
T  43012574 aatttga-gggtgttctttggaggtgagtagtggcgatggacgggggtggataccgtgtttacaatgcttgtttttgtgaaggagtctgttttagatggt 43012672  T
Q  347 gatgt 351  Q
    |||||    
T  43012673 gatgt 43012677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 20611746 - 20612053
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||||||||||||| ||||| |||| || ||| ||| || ||| ||||||| |||||||| ||||||||||||||| |||||| |    
T  20611746 ttctctggtgtaccgggggcgaggggtgccctgctaatttcgtactatagtttgttgggccgatcatttttgattcgagatcgggagtcagttctttgac 20611845  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    | ||  |||||||||||||||   |||||||||||| ||||||||||||||| |||| |||||  ||||| ||| || |||||||||  ||| |||| ||    
T  20611846 ttaagttggtttttgggctttgcgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaa 20611945  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     ||| ||||| ||||||||||  |||| ||||||||||| ||| ||||||||| || ||||||||||||||||||||   | ||||||||||||||||||    
T  20611946 tgtgactcagcttgggtgttg-ggtctaggagttttattctga-gggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttaca 20612043  T
Q  311 gggtttgttt 320  Q
    | | ||||||    
T  20612044 gtgcttgttt 20612053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 309
Target Start/End: Complemental strand, 9584148 - 9583876
Alignment:
Q  37 gggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggc-ttta 135  Q
    |||||| ||||| ||||| | ||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||  |||||||||||| |||     
T  9584148 gggtgccctgctaatttgatactaaagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttgtctcaagatggtttttgggcttttg 9584049  T
Q  136 ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaa-ggtggctcagtttgggtgttgaa 234  Q
    ||||||| |||||| ||||||||||||| | |||||||| ||||  ||| | || |||||| ||  ||| ||||||  ||||||| | |||||| |||      
T  9584048 ttttgtgatctttcggtggatcggaggttgcgaggttgt-gaagtcgcacgatccttcggtcaggcgctcttcgaattgtggctctgcttgggttttggg 9583950  T
Q  235 gtctgggagttttattttgaggggtgttctctggggtgagtagtgacgatgggacgttgtggatactgtgtttac 309  Q
    |||||||||||||||||||| || |||||| || |||||||||||||||| ||  || |||||||  ||||||||    
T  9583949 gtctgggagttttattttga-ggatgttctttgcggtgagtagtgacgataggcggtggtggatatcgtgtttac 9583876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 102 - 263
Target Start/End: Original strand, 21342586 - 21342748
Alignment:
Q  102 cagctctttggctcaatgtggtttttgggcttta-ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttaga 200  Q
    ||||||||| || |||  |||||||| ||||||  ||||||||||||||  |||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  21342586 cagctctttagcccaacttggtttttaggcttttgttttgtgctctttcgatggatcagaggtcgagaggttgtggaagctgcttgttcattcggttaga 21342685  T
Q  201 agcttttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttc 263  Q
    ||||||||||| |||||||   ||||||||||||||||| ||||||||||   ||||||||||    
T  21342686 agcttttcgaatgtggctcgacttgggtgttgaagtctgagagttttattccaaggggtgttc 21342748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 34475872 - 34475576
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||||||||||||| ||||| ||||| ||||| |||||||||| |||||||||||||||| ||||||||||||||  |||| |      
T  34475872 ttctctggtgtaccgggggcgaggggtgccctgctaatttgtttctatagtctggtgggccgatcacttttgattcgagatcgggagtcaaatcttggaa 34475773  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    | ||  || |||||||||||| | |||||||||||| |||||| |||||||| |||| |||||  ||||| ||| || |||||||||  ||| |||| ||    
T  34475772 ttaagttgatttttgggctttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagctgtatgatccttcggttaggtgctcttcgaaa 34475673  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     ||| ||||| || |||||||  || || |||||   |||| | ||||||||| || ||||||||||||||||||||  || |||||||| |||||||||    
T  34475672 tgtgactcagcttaggtgttggggtatgagagtt---tttttaagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttaca 34475576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 62 - 287
Target Start/End: Original strand, 17550968 - 17551190
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggag 161  Q
    |||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||  ||||||||||||||| | ||||||||||||  || |||||||    
T  17550968 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtgttgtgctctttcgatgcatcggag 17551067  T
Q  162 gtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggt 259  Q
    |||| |||| |||||  ||||||||| |     ||||||  ||| |||| || ||||||||||||||||||||  ||||| |||||||||||||| ||||    
T  17551068 gtcgcgaggtttgtgatagctgcatgat-----ggttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagttttattttga-gggt 17551161  T
Q  260 gttctctg-gggtgagtagtgacgatggg 287  Q
    ||||| ||  |||||||||||||||||||    
T  17551162 gttctttgtcggtgagtagtgacgatggg 17551190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 45163824 - 45164063
Alignment:
Q  22 tgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtg--gaccgatcacttttgatttgagatcgggagtcagctctttggctcaatg 119  Q
    ||||||||||||||||||||| ||||| ||||||| ||| ||||| |||  | |||||||||||||||| |||||| | |||||| | |||| || ||      
T  45163824 tgtaccgagggcgaggggtgccctgctaatttggtactatagtcttgtgtgggccgatcacttttgattcgagatcagaagtcagttttttgtcttaagt 45163923  T
Q  120 tggtttttgggctttattttgtgctctttcagtggatcggaggtcgag-aggttgtggaagctgcatgttcattcggttagaagcttttcg-aaggtggc 217  Q
    ||||||||||||||| | |||||||||||| ||||||||||||||  | || |||||  ||||||||| || |||||||||  ||| |||| || |||||    
T  45163924 tggtttttgggctttgtgttgtgctctttcggtggatcggaggtcacgaagtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggc 45164023  T
Q  218 tcagtttgggtgttgaagtctgggagttttattttgaggg 257  Q
    | || ||||||||||  |||| ||||||||||||||||||    
T  45164024 ttagcttgggtgttggggtctaggagttttattttgaggg 45164063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 37 - 262
Target Start/End: Original strand, 14879421 - 14879646
Alignment:
Q  37 gggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa-tgtggtttttgggcttta 135  Q
    |||||| || |||||| ||| |||||||||||||| |||||||||||||||| ||||||||||||| | || |||| |||| | | | |||||| ||||     
T  14879421 gggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtctgttcgttggatcaagttttggttttggactttt 14879520  T
Q  136 ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaag 235  Q
    | | ||  |||||| |||||| |||||||||||||| |||||||||  ||| || ||| | ||| ||||||||| | ||||||| | || |||||| |||    
T  14879521 tatggtt-tctttcggtggataggaggtcgagaggtggtggaagcttaatgatctttcagataggagcttttcggatgtggctcgggtttggtgttcaag 14879619  T
Q  236 tctgggagttttattttgaggggtgtt 262  Q
    ||||||||||| |||||||||||||||    
T  14879620 tctgggagtttaattttgaggggtgtt 14879646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 320
Target Start/End: Original strand, 47235729 - 47235969
Alignment:
Q  82 tttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagc 180  Q
    ||||||| ||||||| ||||| | |||||| || ||  ||||||||||||||| | || ||||||||| ||||||| ||||||| |||| |||||  |||    
T  47235729 tttgattcgagatcgagagtcggttctttgacttaagttggtttttgggctttgtgttttgctctttcggtggatcagaggtcgcgaggtttgtgatagc 47235828  T
Q  181 tgcatgttcattcggttagaagcttttcg-aaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagt 278  Q
    |||||| || |||||||||  ||| |||| || |||| |||| ||||||||||  ||||| |||||||||||||| ||||||||| || |||||||||||    
T  47235829 tgcatgatccttcggttaggtgctcttcgaaatgtggttcagcttgggtgttggggtctgcgagttttattttga-gggtgttctttgtgggtgagtagt 47235927  T
Q  279 gacgatgggacgttgtggatactgtgtttacagggtttgttt 320  Q
    ||||||||   || |||||||| |||||||||| | ||||||    
T  47235928 gacgatggacggtggtggataccgtgtttacagtgcttgttt 47235969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 2394366 - 2394089
Alignment:
Q  19 tggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaat 118  Q
    |||||||||| ||||||||||||| ||||| ||||||| ||| || |||||||||||||||||||||||| ||||| || |||||| |||||| || ||     
T  2394366 tggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagttctttgtcttaag 2394267  T
Q  119 gtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttc-gaaggtgg 216  Q
     |||||||||||                 || ||||||||||||||| |||| |||||  ||||||||| || ||||||||| | || |||  || ||||    
T  2394266 ttggtttttggg-----------------tcggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtgg 2394184  T
Q  217 ctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
    ||||| ||||||||||  |||| ||||||||||||||   |||||| | || ||||||||||||||||||||  || |||||||| ||||||||||    
T  2394183 ctcagcttgggtgttggggtctaggagttttattttg-taggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacag 2394089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 14193900 - 14194006
Alignment:
Q  11 gtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctcttt 110  Q
    ||||||| |||||||||| | | ||||||||| || |||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||| | |||||    
T  14193900 gtgttctttggtgtaccgggagtgaggggtgcccttctgatttggtcctaaagtctggcggaccgatcacttttgattcgagattgggagtcggttcttt 14193999  T
Q  111 ggctcaa 117  Q
    |||||||    
T  14194000 ggctcaa 14194006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 285
Target Start/End: Original strand, 31482883 - 31483119
Alignment:
Q  50 atttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttc 149  Q
    ||||||||||| ||||||| || | |||||||||||||| |||||||||| |||  ||||    | ||  || |||||||||||| | ||||||||||||    
T  31482883 atttggttctatagtctggcgggcggatcacttttgattcgagatcgggaatcaaatcttaaaattaagttgatttttgggctttgtgttgtgctctttc 31482982  T
Q  150 agtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aaggtggctcagtttgggtgttgaagtctgggagtttt 247  Q
     |||||| |||||||| |||| |||||  ||||||||| || |||||||||  ||| |||| || ||||||||| || |||||||  || || ||||||     
T  31482983 ggtggattggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttaggtgttggggtttgagagttt- 31483081  T
Q  248 attttgaggggtgttctctg-gggtgagtagtgacgatg 285  Q
     |||| | ||||||||| || |||| |||||||||||||    
T  31483082 -tttttaagggtgttctttgtgggttagtagtgacgatg 31483119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 25647647 - 25647863
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| | | || |||||| || |||||||||| ||||||||||  || || ||||||||||||| ||||||||||||  | ||||||||    
T  25647647 ttctctggtgtaccgggagtgaagggtgcccttctgatttggtcctaaagtctgacgggcctatcacttttgattcgagatcgggagttggttctttggc 25647746  T
Q  114 tcaa--tgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaa 211  Q
    | ||  | | | |||| |||||| || ||   |||||  ||||||||||||||||||||| ||| ||| || ||| || ||||||||  ||||||||| |    
T  25647747 ttaagtttttggttttaggcttt-ttatggtttcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttcggttatgagcttttcgga 25647845  T
Q  212 ggtggctcagtttgggtg 229  Q
     |||||||||||| ||||    
T  25647846 cgtggctcagttttggtg 25647863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 33144020 - 33143899
Alignment:
Q  61 aagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa-tgtggtttttgggctttattttgtgctctttcagtggatcgg 159  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||   | ||||||||||||| || ||   |||||| ||||||| |    
T  33144020 aagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtttttgggcttt-ttatggtttctttcggtggatcag 33143922  T
Q  160 aggtcgagaggttgtggaagctg 182  Q
    |||||| ||||| ||||||||||    
T  33143921 aggtcgcgaggtggtggaagctg 33143899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 151 - 308
Target Start/End: Original strand, 7104942 - 7105100
Alignment:
Q  151 gtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttggg-tgttgaagtctgggagttttat 249  Q
    |||||||| |||| ||||||| |||||||||| ||| |  |||| |||  |||||||||||  |||||||||||  | ||||   | |||||||||||||    
T  7104942 gtggatcgaaggttgagaggtggtggaagctgtatgatgcttcg-ttatgagcttttcgaatatggctcagtttttgatgttagggactgggagttttat 7105040  T
Q  250 tttgaggggtgtt-ctctggggtgagtagtgacgatgggacgttgtggatactgtgttta 308  Q
    ||| ||||||||| || ||||||||||||||||||||||  || ||||||||||| ||||    
T  7105041 tttaaggggtgtttctttggggtgagtagtgacgatgggtggtggtggatactgttttta 7105100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 320
Target Start/End: Original strand, 53247987 - 53248172
Alignment:
Q  138 ttgtgctctttcagtggatcggaggtcgagaggtt-gtggaagctgcatgttcattcggttagaagcttttcgaag-gtggctcagtttgggtgttgaag 235  Q
    |||||||||||| |||||| |||||||| |||||| |||  || || ||| || ||||||||   ||| ||||||  ||||||||||||||||||||  |    
T  53247987 ttgtgctctttcggtggattggaggtcgcgaggtttgtgatagttgtatgatccttcggttatgtgctcttcgaaatgtggctcagtttgggtgttgggg 53248086  T
Q  236 tctgggagtttt-attttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttacagggtttgttt 320  Q
    |||| ||||||| |||||||| | |||||| || ||||||||||||||||||||  || |||| ||| |||||||||| | ||||||    
T  53248087 tctgagagtttttattttgagag-tgttctttgtgggtgagtagtgacgatgggcggtggtggttaccgtgtttacagtgcttgttt 53248172  T

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Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 37123353 - 37123465
Alignment:
Q  22 tgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtg 121  Q
    |||||||| || ||||||||| ||  || |||||| ||||| | |||||| |||||||||||||||| ||||| ||||||||| ||||||| ||||  |     
T  37123353 tgtaccgaaggagaggggtgcccttatgttttggtcctaaattttggtgggccgatcacttttgattcgagattgggagtcagttctttggatcaaattt 37123452  T
Q  122 gtttttgggcttt 134  Q
    | |||||||||||    
T  37123453 ggttttgggcttt 37123465  T

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Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 47945713 - 47945789
Alignment:
Q  58 ctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggcttt 134  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||| | ||||||||||  | | |||||||||||    
T  47945713 ctaaagtccggtgggccgatcacttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggcttt 47945789  T

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Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 14755381 - 14755285
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttgg 112  Q
    |||| ||||||||||| || ||||||||| ||  |  ||| || |||||||||||||| ||||||||||||||||  |||||||||||||| |||||||    
T  14755381 ttctctggtgtaccgaaggtgaggggtgccctttt--ttttgtgctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagttctttgg 14755285  T

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Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 1652971 - 1652856
Alignment:
Q  47 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctct 146  Q
    |||||||||| || || ||| |||| |||||||||||||||| |||||| ||||| || ||||||| ||||  | | ||||||||||| ||| ||| |||    
T  1652971 ctgatttggtcctgaactcttgtgggccgatcacttttgattcgagatcaggagttagttctttggttcaagtttggttttgggcttt-tttggtgttct 1652873  T
Q  147 ttcagtggatcggaggt 163  Q
    ||| ||||| |||||||    
T  1652872 ttcggtggaccggaggt 1652856  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 14194038 - 14194105
Alignment:
Q  156 tcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagttt 224  Q
    |||||||||||||||| |||||||||| ||  || ||||||||| ||||||||| | ||||||||||||    
T  14194038 tcggaggtcgagaggt-gtggaagctgaattgtctttcggttaggagcttttcggacgtggctcagttt 14194105  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 5556581 - 5556636
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa 117  Q
    ||||||||||  ||||| ||||||||| ||||||||||||||| ||||||| ||||    
T  5556581 agtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaa 5556636  T

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Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 20710779 - 20710740
Alignment:
Q  61 aagtctggtggaccgatcacttttgatttgagatcgggag 100  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  20710779 aagtctggtgggccgatcacttttgattcgagatcgggag 20710740  T

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Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 39021342 - 39021291
Alignment:
Q  66 tggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa 117  Q
    |||||| |||||||||||||||| ||| ||||||||||| ||||||| ||||    
T  39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagttctttggatcaa 39021291  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 24099411 - 24099345
Alignment:
Q  48 tgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggct 114  Q
    ||||||| || || |||||||||| |||||||||||||||| || ||||||| |||| | |||||||    
T  24099411 tgatttgtttatagagtctggtgggccgatcacttttgattcgatatcgggaatcagttttttggct 24099345  T

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Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 30127245 - 30127315
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    ||||||||||||  ||||||| |||   |||||||||  |||||| ||||||||| |||||||||||||||    
T  30127245 gaggggtgctctattgatttgtttcgggagtctggtgagccgatcgcttttgattcgagatcgggagtcag 30127315  T

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Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 30352356 - 30352260
Alignment:
Q  213 gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctgggg-tgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
    ||||||||| ||||||||||  |||| |||||||| ||| |   |||||||| || || |||||||||||||||||  || |||||||| ||||||||||    
T  30352356 gtggctcagcttgggtgttggggtctcggagttttttttag---ggtgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgtttacag 30352260  T

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Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 34389918 - 34390214
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    ||||||||||| |||||||| | ||| |||| |||| |||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||    
T  34389918 tatggtgttctctggtgtactgggggtgaggagtgccctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagtcagct 34390017  T
Q  107 ctttggctcaatgtggtttttgggcttt-attttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctt 205  Q
    |||||||| ||  ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  34390018 ctttggcttaagttggtttttgggcttttattttgtgctctttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcgattaggagctt 34390117  T
Q  206 ttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctgggg-tgagtagtgacgatgggacgttgtggatact 301  Q
    ||| || ||||||||  |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||  |||| |||||||    
T  34390118 ttcaaatgtggctcaacttgggtgttgtagtctgggagttttattttgaggggtgttctttggggatgagtagtgacgatgggtggttgcggatact 34390214  T

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Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 35745952 - 35745595
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    ||||||||||| || ||||||| ||||||||||||| || || |||| ||||||||||||| ||| | |||||||||||||| |||||||| ||||| ||    
T  35745952 tatggtgttctctgatgtaccgggggcgaggggtgccctactaattttgttctaaagtctgatgggctgatcacttttgattcgagatcggaagtcatct 35745853  T
Q  107 ctttggctcaatgtggtttttgggcttt--attttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagct 204  Q
    |||||||||||  |||||||||||||||   |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| ||||    
T  35745852 ctttggctcaagttggtttttgggcttttgtttttgtgctctttcggtggattggaggtggagaggttgtggaagctgcatgttcattcggttaggagct 35745753  T
Q  205 tttcg----aaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggacgttgtggata 299  Q
    |||||    |  ||||||||| |||||||||||||||||   ||||||||||||| |||||||| | |||||||||||||||||||||  |  ||||||     
T  35745752 tttcgatatatagtggctcagcttgggtgttgaagtctgactgttttattttgagaggtgttctttgggggtgagtagtgacgatgggtgggggtggatg 35745653  T
Q  300 ctgtgtttacagggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
     ||||||||  | ||||||||||||||||| |||||||||||||| ||||||| ||||    
T  35745652 ttgtgtttagtgtgtttgtttctgttaaggtgtctgtcttaggtggtgatgtgttttg 35745595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 47326003 - 47325695
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| |||||||||||||  |||| ||||||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||| |    
T  47326003 ttctctggtgtaccgggggcgaggggtgccttgctaatttggtactatagtctggtgggccgatcgcttttgatttgagatcgggagtcagctctttgac 47325904  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    ||||  ||||||||||||||| |  |||||||||||  |||||||||||||| |||| |||||  ||||| ||| || |||||||||  ||| |||| ||    
T  47325903 tcaagttggtttttgggctttgtgctgtgctctttcgatggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaa 47325804  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttg-tggatactgtgtttac 309  Q
     ||||||||| ||||||||||  |||||||||||||||||||| ||||||||| || |||||||||||||||||||| || || ||||||||||||||||    
T  47325803 tgtggctcagcttgggtgttggggtctgggagttttattttga-gggtgttctttgtgggtgagtagtgacgatggg-cgatgatggatactgtgtttac 47325706  T
Q  310 agggtttgttt 320  Q
    || | ||||||    
T  47325705 agtgcttgttt 47325695  T

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Target: chr7; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 6584873 - 6585046
Alignment:
Q  15 tctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggct 114  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  6584873 tctatggtgtaccggaggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggct 6584972  T
Q  115 caatgtggtttttgggc-tttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgt 187  Q
     ||  |||||||||||| ||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  6584973 taagttggtttttgggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 6585046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 41089866 - 41089569
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |    
T  41089866 ttctctggtgtatcgggggcgaggggtgctctgctaatttggtactaaagtctggtggaccgatcacttttgattcgagattgggagtcagctctttgac 41089767  T
Q  114 tcaatgtggtttttgggc-tttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaag 212  Q
    ||||  ||||||||| || ||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||| |  |||| | ||  ||| |||||||    
T  41089766 tcaagttggtttttgagcttttgttttgtgatctttcggtggatcggaggtcgcgaggttgtggaagctgcatgattcttcgttgaggtgctcttcgaag 41089667  T
Q  213 -gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctggggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     || |||||   ||||||||   |||||||||||||||||||| ||||||||| || ||  | ||||||| |||||  || || |||||||||||||||    
T  41089666 tgtagctcaagatgggtgttagggtctgggagttttattttga-gggtgttctttgcgggtaatagtgacaatgggcggtggtagatactgtgtttaca 41089569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 38306224 - 38306499
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||| | ||||||||||||| ||||| ||||||| ||| |||||||||| |||||||||||||||| ||||| ||||||||| |||||| |    
T  38306224 ttctctggtgtacagggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagattgggagtcagttctttgac 38306323  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcga-a 211  Q
    ||||  ||||||||||||||| | ||||||||||||  ||| |||||||||| |||| |||||  ||||||||| || ||||||||   ||| ||||| |    
T  38306324 tcaagttggtttttgggctttgtgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaagtgctcttcgata 38306423  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatggg 287  Q
     ||||||||| ||||||||||  ||||| |||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  38306424 tgtggctcagcttgggtgttggggtctgtgagttttattttga-gggtgttctttgtaggtgagtagtgacgatggg 38306499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 8745116 - 8745363
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||| |||||||| ||||||||  || |||||||||| ||||| |||||||| |||||||||||||||| |||||||||| |||| || ||||     
T  8745116 ttctctggtgcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcgggattcagttcgttgga 8745215  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaagg 213  Q
    ||||  | | ||||||||||| | | ||  |||||| |||||||||||||||||||||||||||||||||||| || ||| | ||| ||||||||| | |    
T  8745216 tcaagtttggttttgggctttttatggtt-tctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatg 8745314  T
Q  214 tggctcagtttgggtgttgaagtctgggagttttattttgaggggtgtt 262  Q
    |||||||| || |||||| ||| |||||||||| |||||||||||||||    
T  8745315 tggctcagctttggtgttcaagactgggagtttaattttgaggggtgtt 8745363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 33435067 - 33435329
Alignment:
Q  9 tggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctct 108  Q
    |||| |||| |||||||||| ||||||||||||| ||| | ||||||| |||||||||||||   ||||||||||||||| ||||||||||||||| |||    
T  33435067 tggttttctctggtgtaccgggggcgaggggtgccctgttaatttggtactaaagtctggtgagacgatcacttttgattcgagatcgggagtcagttct 33435166  T
Q  109 ttggctcaatgtggtttttgggc-tttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctttt 207  Q
    ||| |||||  | |||| ||||| ||| |||||||||||||| ||||||||||||||| ||||||||| ||||| |||| || |||||| ||  ||| ||    
T  33435167 ttgtctcaagttcgtttgtgggcatttgttttgtgctctttcggtggatcggaggtcgcgaggttgtgaaagctacatgatccttcggtcaggtgctctt 33435266  T
Q  208 cgaa-ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctgggg 270  Q
    ||||  ||||||||| |||| |||||| ||||| ||||||| |||||| ||||||||| |||||    
T  33435267 cgaattgtggctcagcttggttgttgaggtctgagagttttcttttga-gggtgttctttgggg 33435329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 3867079 - 3867378
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||||||||||||||| |||||  ||||| ||||||| ||||| | |||||| | |||||||||||||| |||| |||||||||| |||||| |    
T  3867079 ttctctggtgtaccgagggcgaagggtggcctgctaatttggtactaaaatatggtgggctgatcacttttgattcgagaccgggagtcagttctttgac 3867178  T
Q  114 tcaatgtggtttttgggc-tttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcga-a 211  Q
    ||||  |||||||||||| |||  ||||||||||| | ||||||| ||||||| |||||| ||||| ||||||| || || ||| ||  ||| ||||| |    
T  3867179 tcaagttggtttttgggcttttgctttgtgctcttgcggtggatcagaggtcgcgaggttatggaaactgcatgatcctttggtcaggtgctcttcgata 3867278  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     ||||||||| |||||||||| ||| ||| ||||||||||||| ||||||||| | ||||||||||||||||||||   || |||||||  |||||||||    
T  3867279 tgtggctcagcttgggtgttggagtatggaagttttattttga-gggtgttctttgggggtgagtagtgacgatggacggtggtggatatcgtgtttaca 3867377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 287
Target Start/End: Complemental strand, 5860398 - 5860131
Alignment:
Q  22 tgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtg 121  Q
    ||||||| ||||||||||||| ||||| ||||||| ||| |||| ||||| || ||| ||||||||| ||||||||||||||  |||||| | |||  ||    
T  5860398 tgtaccgggggcgaggggtgccctgctaatttggtactatagtccggtgggcctatcgcttttgattcgagatcgggagtcaattctttgacgcaagttg 5860299  T
Q  122 gtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aaggtggctc 219  Q
    ||||||||||||| | |||||||||||| |||| |||||||||| |||| |||||  ||||||||| || ||| |||||  ||| |||| || |||||||    
T  5860298 gtttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcagttaggtgctcttcgaaatgtggctc 5860199  T
Q  220 agtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatggg 287  Q
    || ||||||||||  |||||||||||||||||| | ||||||||| || || |||||||||||||||||    
T  5860198 agcttgggtgttggggtctgggagttttattttca-gggtgttctttgtggatgagtagtgacgatggg 5860131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 37794957 - 37795251
Alignment:
Q  19 tggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaat 118  Q
    |||||||||| ||||||||||||| ||||| |||||||  || ||| |||||| ||| ||| |||||||| ||||||||||||||| ||||||  ||||     
T  37794957 tggtgtaccgggggcgaggggtgccctgctaatttggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttctttgagtcaag 37795056  T
Q  119 gtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcgaa-ggtgg 216  Q
     ||||||||||||||| | |||||||||||| |||| |||||||||| |||| |||||  ||||||||| || |||||||||  ||| ||||||  ||||    
T  37795057 ttggtttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaactgtgg 37795156  T
Q  217 ctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
    ||||| ||||||||||  || || |||||||||||||| ||||||||| || || | |||||| | ||||||  || |||||||| ||||||||||    
T  37795157 ctcagcttgggtgttggggtttgagagttttattttga-gggtgttctttgtggttaagtagtaatgatgggcggtggtggataccgtgtttacag 37795251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 10244145 - 10244420
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||| ||||||||| ||||| ||||||| ||| | |||||||| |||||||||||||||| ||||||||||||||| |||||| |    
T  10244145 ttctctggtgtaccgggggagaggggtgccctgctaatttggtgctataatctggtgggccgatcacttttgattcgagatcgggagtcagttctttgac 10244244  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcgaa- 211  Q
    ||||  | |||||||| |||| | ||||||||||||||||| |||||||||| |||| |||||  || |||||| || |||||||||  ||| || |||     
T  10244245 tcaagttagtttttggcctttgtgttgtgctctttcagtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctctttgaat 10244344  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatggg 287  Q
     ||||||||| |||||||||   |||||||| ||||| || || ||||| ||| || ||||||||||||||||||||    
T  10244345 tgtggctcagcttgggtgtttgggtctgggatttttagttgga-gggtggtctttgtgggtgagtagtgacgatggg 10244420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 283
Target Start/End: Original strand, 3478335 - 3478583
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctt 133  Q
    ||||||||| || ||| |||||| ||||||| |||||| |||||||||||||||| |||||||||||| || ||||||||||||  |   ||||||||||    
T  3478335 gaggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagattagttttgggctt 3478434  T
Q  134 tattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttga 233  Q
    |  || ||| |||||| ||||||||||| ||||||||| | |||||||| ||| || ||||| |   | ||||||  || ||||| || || ||||||||    
T  3478435 t-gttggtgttctttcggtggatcggagatcgagaggtggcggaagctgaatgatctttcggatgtgaacttttctgagttggctaagctttggtgttga 3478533  T
Q  234 agtctgggagttttattttgaggggtgttctctggggtgagtagtgacga 283  Q
     | |||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  3478534 ggactgggagtttaattttgaggagtgttctttggggtgagtagtgacga 3478583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 73 - 311
Target Start/End: Complemental strand, 44353623 - 44353382
Alignment:
Q  73 ccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-t 171  Q
    |||||||||||||||||||||||||||||||| |||||| || |   ||||||||||||||| | |||||||||||| ||||||||||||||| |||| |    
T  44353623 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtt 44353524  T
Q  172 tgtggaagctgcatgttcattcggttagaagcttttcg-aaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gg 269  Q
    ||||  ||||||||| || |||||||||  ||| |||| || ||| | | | ||||||||||  ||||||||||||||||||   ||||||||| ||  |    
T  44353523 tgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttatttttgagggtgttctttgtag 44353424  T
Q  270 gtgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
    |||||||||||||||||   || |||||||| ||||||||||    
T  44353423 gtgagtagtgacgatggacggtggtggataccgtgtttacag 44353382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 3419774 - 3419500
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||| ||||| ||||||||||||| ||| | ||||||| ||||||| |||||| | |||||||||||||| |||||||||||||||||||||| |    
T  3419774 ttctctggtataccgggggcgaggggtgccctgttaatttggtactaaagtgtggtgggctgatcacttttgattcgagatcgggagtcagctctttgac 3419675  T
Q  114 tcaatgtggtttttgggctttattt-tgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcgaa 211  Q
    ||||  ||||||||||||||| ||| ||||||||||| ||||||| ||||||   ||| |||||  |||||| || || |||||||||  ||  ||||||    
T  3419674 tcaagttggtttttgggctttgtttctgtgctctttcggtggatcagaggtcacaaggtttgtgatagctgcttgatccttcggttaggtgcgcttcgaa 3419575  T
Q  212 -ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatg 285  Q
      |||||| |  ||||||||||  || ||||||||||||||| | ||||||||| || | ||||||||||||||||    
T  3419574 ttgtggcttaacttgggtgttggggtttgggagttttatttt-aagggtgttctttgtgagtgagtagtgacgatg 3419500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 24324916 - 24324640
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||   |||||||| || ||||||||||  |||||| |||||| ||||||| |||||||| ||||||||||||||  ||||||||    
T  24324916 ttctttggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgggccgatcaattttgattcgagatcgggagtcaattctttggc 24324817  T
Q  114 tcaa-tgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaag 212  Q
    |||| | | | ||||||||||| | | ||  |||||  ||||||||||||||||| ||| |||||||||| ||| || ||||||||| |||||||||       
T  24324816 tcaagttttggttttgggctttttatggtt-tctttaggtggatcggaggtcgaggggtggtggaagctgaatgatctttcggttaggagcttttcggct 24324718  T
Q  213 gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtg-ttctct---ggggtgagtagtgacgatgg 286  Q
    ||||||||| || |||||| | | | | |||||||||||||||||||| || |||   ||||||||||||||||||||    
T  24324717 gtggctcagctttggtgttcaggacggagagttttattttgaggggtgtttttctttaggggtgagtagtgacgatgg 24324640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 75 - 341
Target Start/End: Complemental strand, 48162083 - 48161817
Alignment:
Q  75 gatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggcttta--ttttgtgctctttcagtggatcggaggtcgagaggtt 172  Q
    ||||| |||||||| |||||||| | |||| ||||||||||||  || ||||||| ||||   |||||||||||||  ||||||| ||||||||||||||    
T  48162083 gatcatttttgattcgagatcggaaatcagttctttggctcaaattgatttttggacttttgtttttgtgctcttttggtggatcagaggtcgagaggtt 48161984  T
Q  173 gtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttc--tctgggg 270  Q
    ||||||| ||| |||||||| |||||| ||||||||||| ||||||| |  | || ||||||||||| |||||||||| |||| |||||||  |  ||||    
T  48161983 gtggaagttgcttgttcattgggttag-agcttttcgaatgtggctc-gacttggcgttgaagtctgagagttttattctgagaggtgttcgtttggggg 48161886  T
Q  271 tgagtagtgacgatgggacgttgtggatactgtgtttacagggtttgtttctgttaaggcgtctgtcttag 341  Q
    ||| | |||||||| ||  |||||||  ||||| |||  || |||||||||| |||||| |||||||||||    
T  48161885 tgaattgtgacgataggtggttgtgg--actgtatttctagtgtttgtttctattaaggtgtctgtcttag 48161817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 213 - 342
Target Start/End: Original strand, 6585045 - 6585176
Alignment:
Q  213 gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctgg-ggtgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||| |  |||||||||||||||||| |||    
T  6585045 gtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgctatttggaggtgagtagtgacgatgagtggttgtggatactgtgttttcag 6585144  T
Q  312 -ggtttgtttctgttaaggcgtctgtcttagg 342  Q
     | |||||||||||||||| ||| ||||||||    
T  6585145 tgttttgtttctgttaaggtgtccgtcttagg 6585176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 25160778 - 25160867
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtca 103  Q
    |||| |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||| |||||||| |||||    
T  25160778 ttctctggtgtaccgagggcgaggggtgccctgctaatttggttctatagtctggtggaccgattacttttgattcgagatcggaagtca 25160867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 6716854 - 6716751
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||||| | ||||||||| || |||||||  |  ||||||||||| | |||||||||||||||| ||||||||||||||| ||||||||    
T  6716854 ttctctggtgtaccgagagtgaggggtgcccttctgatttaatcataaagtctggttggccgatcacttttgattcgagatcgggagtcagttctttggc 6716755  T
Q  114 tcaa 117  Q
    ||||    
T  6716754 tcaa 6716751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 46133363 - 46133246
Alignment:
Q  47 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa-tgtggtttttgggctttattttgtgctc 145  Q
    |||||||||| || ||||||||||  |||||| ||||||||||||||||||||||||| ||| ||| |||| | ||||||||||||||| ||| ||| ||    
T  46133363 ctgatttggtgctgaagtctggtgagccgatcgcttttgatttgagatcgggagtcagttctctggttcaagtttggtttttgggctttttttggtgttc 46133264  T
Q  146 tttcagtggatcggaggt 163  Q
     ||| ||||| |||||||    
T  46133263 cttcggtggaccggaggt 46133246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 320
Target Start/End: Complemental strand, 31972089 - 31971944
Alignment:
Q  176 gaagctgcatgttcattcggttagaagcttttcgaag-gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtga 273  Q
    |||| |||||| || |||||||||  ||| ||||||  ||||||||| ||||||||||  ||||||||||||||||| || ||||||||| || ||||||    
T  31972089 gaaggtgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttatttgga-gggtgttctttgtgggtga 31971991  T
Q  274 gtagtgacgatgggacgttgtggatactgtgtttacagggtttgttt 320  Q
    ||||||||||||||  || || ||||| |||||||||| | ||||||    
T  31971990 gtagtgacgatgggcggtggttgataccgtgtttacagtgcttgttt 31971944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 170
Target Start/End: Original strand, 1320777 - 1320913
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa-tgtggtttttgggct 132  Q
    ||||||||| ||  |||||||||  ||||||||||||| ||||||||||||||||  | ||||| |||||| |||||||||||| | | | |||||||||    
T  1320777 gaggggtgcccttttgatttggtcataaagtctggtgggccgatcacttttgattcaaaatcggaagtcagttctttggctcaagttttggttttgggct 1320876  T
Q  133 ttattttgtgctctttcagtggatcggaggtcgagagg 170  Q
    || || ||   |||||| ||||||||||||||||||||    
T  1320877 tt-ttatggtttctttcggtggatcggaggtcgagagg 1320913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 42533350 - 42533281
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtca 103  Q
    ||||||||| || |||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||    
T  42533350 gaggggtgccctcctgatttggtcctaaagtctggtgggctgatcacttttgattcgagatcgggagtca 42533281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 16954636 - 16954719
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa 117  Q
    ||||||||| || |||||||||| |||||||||||| ||||||||||||||| || |||||||  |||||| |||||| |||||    
T  16954636 gaggggtgcccttctgatttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttgactcaa 16954719  T

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Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 47457107 - 47457037
Alignment:
Q  47 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa 117  Q
    |||||| ||| || ||||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  47457107 ctgattaggtcctgaagtctgatggaccgatcgcttttgatttgagattgggagtcagttctttggctcaa 47457037  T

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Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 38485540 - 38485609
Alignment:
Q  35 aggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    |||||||| || |||| || ||||| ||||||||||| |||||||||||||||| |||||||||||||||    
T  38485540 aggggtgcccttctgaatttgttctgaagtctggtgggccgatcacttttgattcgagatcgggagtcag 38485609  T

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Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 13311850 - 13311905
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa 117  Q
    |||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||    
T  13311850 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaa 13311905  T

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Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 44755609 - 44755664
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgattt 89  Q
    ||||||||| || |||||||||| |||||||||||||| |||||||||||||||||    
T  44755609 gaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattt 44755664  T

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Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 9349757 - 9349801
Alignment:
Q  59 taaagtctggtggaccgatcacttttgatttgagatcgggagtca 103  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||    
T  9349757 taaagtctggtgggccgatcacttttgattcgagatcgggagtca 9349801  T

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Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 12480882 - 12480965
Alignment:
Q  47 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa-tgtggtttttgg 129  Q
    ||||||| || || |||| |||||| |||||| ||||||||| ||||||||||||||| ||||||| |||| | ||||||||||    
T  12480882 ctgattttgtcctgaagtttggtgggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttgg 12480965  T

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Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 16829034 - 16828951
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa 117  Q
    ||||||||| || |||||||||| |||||||||||| | | ||||||||||| || |||||||  |||||| |||||| |||||    
T  16829034 gaggggtgcccttctgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtcagttctttgactcaa 16828951  T

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Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 27993606 - 27993568
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgggag 100  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  27993606 agtctggtggaccgatcacttttgattcgagatcgggag 27993568  T

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Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 48058725 - 48058669
Alignment:
Q  61 aagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa 117  Q
    |||||||||||  ||||| |||||||||||||||||| |||||| | ||||||||||    
T  48058725 aagtctggtgggtcgatcgcttttgatttgagatcggaagtcagttttttggctcaa 48058669  T

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Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 25153231 - 25153265
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcg 96  Q
    ||||||||||||||||||||||||||| |||||||    
T  25153231 agtctggtggaccgatcacttttgattcgagatcg 25153265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 46262189 - 46262151
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgggag 100  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  46262189 agtctggtgggccgatcacttttgattcgagatcgggag 46262151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 23983151 - 23983247
Alignment:
Q  7 tatggtgttcta-tggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtca 103  Q
    |||||||||||  ||||| |||||||| ||||||||| || || |||||||  | |||||||||||  |||||  |||||||| ||||||||||||||    
T  23983151 tatggtgttcttctggtggaccgagggtgaggggtgc-cttctaatttggtcttgaagtctggtgggtcgatcgtttttgattcgagatcgggagtca 23983247  T

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Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 17802885 - 17802837
Alignment:
Q  63 gtctggtggaccgatcacttttgatttgagatcgggagtcagctctttg 111  Q
    ||||||||| |||||||||||||||| |||||||| || ||||| ||||    
T  17802885 gtctggtgggccgatcacttttgattcgagatcggaagccagctttttg 17802837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 15821504 - 15821151
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagct 106  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  15821504 tatggtgttctctggtgtaccgagggcgaggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtcagct 15821405  T
Q  107 ctttggctcaatgtggtttttgggc-tttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagctt 205  Q
    ||||| || |   |||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| |  | |||||||| |||||| |||||    
T  15821404 ctttgacttatgttggtttttgggcttttgttttgtgctctttcagtggatcagaggtcgagaggttgtggaaacaacttgttcatttggttaggagctt 15821305  T
Q  206 ttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttc-tctggggtgagtagtgacgatgggacgttgtggatactgtg 304  Q
    |||||| ||||||||| | || ||||||||||||||||||||||||||||| |||||| | ||| |||||||||| ||||| |  |||||||||  ||||    
T  15821304 ttcgaatgtggctcagctcggatgttgaagtctgggagttttattttgaggagtgttcttttggagtgagtagtggcgatgagtggttgtggattttgtg 15821205  T
Q  305 ttta-cagggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
    |||| |  | |||||||||||||||| |||||||||||||| ||||||| ||||    
T  15821204 tttaccttgttttgtttctgttaaggtgtctgtcttaggtggtgatgtgttttg 15821151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 134 - 350
Target Start/End: Complemental strand, 35816240 - 35816026
Alignment:
Q  134 tattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttga 233  Q
    |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||  || |||||||| |||||||||||||| ||||||    
T  35816240 tattttgtgctcttttggtggatcggaggttgagagattgtggaagctgcatgttcattcggttaagagtttttcgaatgtggctcagtttggatgttga 35816141  T
Q  234 agtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggacgttgtggatactgtgtttacagggtttgtttctgttaaggcgt 332  Q
    |||| | |||||   |||||||||||||||| | |||||||||||||| ||||||  |||||||||||||||||||||  ||||||||||||||||| ||    
T  35816140 agtcagagagtt---ttttgaggggtgttctttgggggtgagtagtgatgatgggtggttgtggatactgtgtttacaatgtttgtttctgttaaggtgt 35816044  T
Q  333 ctgtcttaggtgatgatg 350  Q
    |||||||| ||| |||||    
T  35816043 ctgtcttaagtggtgatg 35816026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 82 - 357
Target Start/End: Complemental strand, 38577840 - 38577561
Alignment:
Q  82 tttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggcttta-ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagc 180  Q
    ||||||| |||||||||||| || ||||||| | ||  |||||||||| ||||  |||||||||||||| ||||||| ||||||||||| ||||||||||    
T  38577840 tttgattcgagatcgggagttagttctttggtttaagttggtttttggacttttgttttgtgctctttcggtggatcagaggtcgagagtttgtggaagc 38577741  T
Q  181 tgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtct-gggagttttattttgaggggtgttctctgggg-tgagtagt 278  Q
    ||||||||||||||||| | |||||||||||  |||| ||  |||||||||||||||| ||||||||||||||| || ||||||| ||||| ||||||||    
T  38577740 tgcatgttcattcggtttggagcttttcgaatatggcgcaacttgggtgttgaagtctggggagttttattttgtggagtgttctttggggatgagtagt 38577641  T
Q  279 gacgatgggacgttgtggatactgtgtttacag-ggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
    ||||||||    ||||||||||||||||||||| | ||||||| | || ||| ||| |||||||||| ||||||| ||||    
T  38577640 gacgatggatgattgtggatactgtgtttacagtgttttgtttatatttaggtgtccgtcttaggtggtgatgtgttttg 38577561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 31207479 - 31207181
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||  ||||||||| ||| ||||| ||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||| |||||| |    
T  31207479 ttctctggtgtaccaggggcgaggg-tgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgac 31207381  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    ||||  ||| ||||||| ||| | ||||||| |||| ||||||||||||||| |||| |||||  ||||| |||  | |||||||||  ||| |||| ||    
T  31207380 tcaagttggattttgggatttgtgttgtgctttttcggtggatcggaggtcgcgaggtttgtgatagctgaatgacccttcggttaggtgctcttcgaaa 31207281  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     ||||||||| |||||||||| ||| ||||||||||||||||| ||||||||| || ||||||||||||||||||||   | ||||||||||||||||||    
T  31207280 tgtggctcagcttgggtgttggagtatgggagttttattttga-gggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttaca 31207182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 9519462 - 9519762
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||| ||||||||| ||||| ||||||| ||| ||||| |||| ||||||| |||||||| ||||||||||||||| |||||| |    
T  9519462 ttctctggtgtaccgggggtgaggggtgccctgctaatttggtactatagtctagtgggccgatcagttttgattcgagatcgggagtcagttctttgac 9519561  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgag-aggttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    ||||  ||||||||||||||| | |||||||||||| |||| |||||||| | | || |||||  ||||||||| ||||||||||||  ||| |||| ||    
T  9519562 tcaagttggtttttgggctttgtgttgtgctctttcggtgggtcggaggttgcgaagtttgtgatagctgcatgatcattcggttaggtgctcttcgaaa 9519661  T
Q  212 ggtggctcagtttgggtgtt-gaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttac 309  Q
      |||||||| ||||||||| |  ||||| |||||||||||||| ||||||||| || ||||||||||||||||||||  || |||||||| ||||||||    
T  9519662 tatggctcagcttgggtgttgggggtctgagagttttattttga-gggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttac 9519760  T
Q  310 ag 311  Q
    ||    
T  9519761 ag 9519762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 24995513 - 24995214
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||| | ||||||||||||   |||| ||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||| |||||| |    
T  24995513 ttctctggtgtactgggggcgaggggtgtcttgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgac 24995414  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    ||||  ||||||||||||||| | ||||||||||||||||| || ||||||| |||| |||||  ||||||||| || |||||||||  ||| |||| ||    
T  24995413 tcaagttggtttttgggctttgtgttgtgctctttcagtgggtcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaa 24995314  T
Q  212 ggtggctcagtttgggtgtt-gaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttac 309  Q
      |||||||| ||||||||| |  |||| ||||||||||||||| ||||||||| || | ||||||||||||||||||  || |||||||| ||||||||    
T  24995313 tatggctcagcttgggtgttgggggtctaggagttttattttga-gggtgttctttgtgcgtgagtagtgacgatgggcggtggtggataccgtgtttac 24995215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 306
Target Start/End: Complemental strand, 32066406 - 32066119
Alignment:
Q  21 gtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgt 120  Q
    |||||||| ||||||||||||| ||||| ||||||| ||| |||||||||| |||||||||||||||| || ||||||||||||||||||| ||| |  |    
T  32066406 gtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgaaatcgggagtcagctctttgactccagtt 32066307  T
Q  121 ggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagct-tttcgaaggtggct 218  Q
    |||||||||||||| | |||||||||||| |||| || ||||| | |||| |||||  ||||||||| ||||||||||||| ||| |||  || |||| |    
T  32066306 ggtttttgggctttgtgttgtgctctttcggtggttcagaggttgcgaggtttgtgatagctgcatgatcattcggttagatgctctttgaaatgtggtt 32066207  T
Q  219 cagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtt 306  Q
    ||| ||||||||||  ||||| ||||||||||| || ||||||||| || | ||||||||||||||||||  || |||||||| |||||    
T  32066206 cagcttgggtgttggggtctgagagttttatttgga-gggtgttctttgtgagtgagtagtgacgatgggcggtggtggatacagtgtt 32066119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 37986976 - 37986678
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||||||||||||| ||||| |||||||  || |||||||||| || |||| |||||||| ||||||||||||||| |||||| |    
T  37986976 ttctctggtgtaccgggggcgaggggtgccctgctaatttggtgttatagtctggtgggccaatcatttttgattcgagatcgggagtcagttctttgac 37986877  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    ||||  ||||||||| ||||| | |||||||||||| |||| |||||||||| |||| |||||  |||||| || || |||||||||  ||| |||| ||    
T  37986876 tcaagttggtttttgtgctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcctgatccttcggttaggtgctcttcgaaa 37986777  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     ||||||||| |||||||||   ||||||||||||||||| || ||||||||| || ||||||||| ||||||||||  || || ||||| |||||||||    
T  37986776 tgtggctcagcttgggtgtttcggtctgggagttttatttgga-gggtgttctttgtgggtgagtaatgacgatgggtggtggtagataccgtgtttaca 37986678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 36630800 - 36630983
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| ||| ||||||||| ||||| |||||| |    
T  36630800 ttctttggtgtaccgggggcgaggggtgccctgctaatttggttctaaagtctggtgggccgatcacttttaattcgagatcgggtgtcagttctttgac 36630899  T
Q  114 tcaatgtggtttttgggc-tttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggt 196  Q
    || |  | |||||||||| ||| ||||||||||||||  |||||||||||||| |||||||||| ||||||||| || ||||||    
T  36630900 tctagtttgtttttgggcttttgttttgtgctctttcgatggatcggaggtcgcgaggttgtgggagctgcatgatccttcggt 36630983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 73 - 311
Target Start/End: Original strand, 20138448 - 20138689
Alignment:
Q  73 ccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-t 171  Q
    |||||||||||||||||||||||||||||||| |||||| || |   ||||||||||||||| | |||||||||||| ||||||||||||||| |||| |    
T  20138448 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtt 20138547  T
Q  172 tgtggaagctgcatgttcattcggttagaagcttttcg-aaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gg 269  Q
    ||||  ||||||||| || |||||||||  ||| |||| || ||| | | | ||||||||||  ||||||||||||||||||   ||||||||| ||  |    
T  20138548 tgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttatttttgagggtgttctttgtag 20138647  T
Q  270 gtgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
    |||||||||||||||||   || |||||||| ||||||||||    
T  20138648 gtgagtagtgacgatggacggtggtggataccgtgtttacag 20138689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 34389123 - 34388965
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||  ||||||||||||| ||||| ||||||| ||| |||||||||| |||||||||||||||| ||||||  ||||||| |||||| |    
T  34389123 ttctctggtgtaccaggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcaagagtcagttctttgac 34389024  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggtt 172  Q
    ||||  ||||||||||||||| | ||||||| |||| |||||||| |||||| ||||||    
T  34389023 tcaagttggtttttgggctttgtgttgtgctatttcggtggatcgtaggtcgtgaggtt 34388965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 285
Target Start/End: Complemental strand, 12898376 - 12898120
Alignment:
Q  30 gggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgg 129  Q
    ||||||||||||| ||  | |||||||  || |||||||||  |||||||||||||||| |||||| |||||||| | | |  |||||  ||||||| ||    
T  12898376 gggcgaggggtgccctattaatttggtaatatagtctggtgacccgatcacttttgattcgagatccggagtcagttatctaactcaagttggttttggg 12898277  T
Q  130 gctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aaggtggctcagtttggg 227  Q
    ||||| | ||||||||||||  ||| |||||||||| |||| |||||  |||||| || || |||||||||  ||| |||| || ||||||||| |||||    
T  12898276 gctttgtgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgc-tgatccttcggttaggtgctcttcgaaatgtggctcagcttggg 12898178  T
Q  228 tgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatg 285  Q
    |||||  ||||  |||||||||||||| ||||||||| || ||||||||||||||||||    
T  12898177 tgttggggtcttagagttttattttga-gggtgttctttgtgggtgagtagtgacgatg 12898120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 16457572 - 16457421
Alignment:
Q  19 tggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaat 118  Q
    ||||||||| |||||||||||||  ||||| ||||| | ||| ||| |||||| |||||||||||||||| ||||||||||||||| |||||| |||||     
T  16457572 tggtgtacc-agggcgaggggtgtcctgctaatttgatactatagtttggtgg-ccgatcacttttgattcgagatcgggagtcagttctttgactcaag 16457475  T
Q  119 gtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggtt 172  Q
     |||||||| |||||| | |||||||||||| |||| ||||| |||| ||||||    
T  16457474 ttggtttttaggctttgtgttgtgctctttcggtggttcggatgtcgtgaggtt 16457421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 58 - 262
Target Start/End: Complemental strand, 17657076 - 17656873
Alignment:
Q  58 ctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatc 157  Q
    ||||||| ||||||  ||||||||||||||| ||||||||||||||| ||||||||||||  | | |||||| |||| || ||   |||||| |||||||    
T  17657076 ctaaagtatggtgggtcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttggacttt-ttatggtttctttcggtggatc 17656978  T
Q  158 ggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggagttttattttgaggg 257  Q
    ||||||||| |||| |||||||||| ||| || |||   ||| ||||||||  ||||||||||  || |||||| | |  ||||||||| ||||||||||    
T  17656977 ggaggtcgataggtggtggaagctgaatgatctttcatataggagcttttcagaggtggctcaactttggtgttcatgattgggagtttaattttgaggg 17656878  T
Q  258 gtgtt 262  Q
    |||||    
T  17656877 gtgtt 17656873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 311
Target Start/End: Complemental strand, 41893475 - 41893221
Alignment:
Q  57 tctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggat 156  Q
    |||| |||||||||| || | ||||||||||| ||||||||||||||| |||||| ||||| || ||||||||||||| | |||||||||||  |||| |    
T  41893475 tctatagtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaa-gttgtttttgggctttgtgttgtgctcttttggtggtt 41893377  T
Q  157 cggaggtcgagaggtt-gtggaagctgcatgttcattcggttagaagcttttcgaag-gtggctcagtttgggtgttgaagtctgggagttttattttga 254  Q
      |||||||  ||||| |||  ||||||||| || |||  |  | | || ||||||  ||||||||| ||||||||||| ||||||||||| |||||| |    
T  41893376 aagaggtcgcaaggtttgtgatagctgcatgatccttctataggta-ctcttcgaaatgtggctcagcttgggtgttgaggtctgggagttctattttca 41893278  T
Q  255 ggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
     ||||||||| || |||||||||||||||||||   || |||||||| ||||||||||    
T  41893277 -gggtgttctttgtgggtgagtagtgacgatggtcggtggtggataccgtgtttacag 41893221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 10248671 - 10248504
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||| ||||||||  || || |||| || ||||| | |||||||||||||||||||||||  |||||||||||||| ||||||||    
T  10248671 ttctctggtgtaccgggggtgaggggtgtccttctaattttgtcctaaaatttggtggaccgatcacttttgattcaagatcgggagtcagttctttggc 10248572  T
Q  114 tcaa-tgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctg 182  Q
    |||| | ||||||||  ||||||| | ||  |||||  |||||||||||| || ||||| ||||||||||    
T  10248571 tcaagtttggttttt-tgctttatatggt-ttcttttggtggatcggaggccgcgaggtggtggaagctg 10248504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 12198162 - 12198030
Alignment:
Q  39 gtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattt 138  Q
    ||||||| || |||||||  | |||||||||||||||||||||||| |||  | || ||||||||| ||||||||||||  | | ||||| ||||| |||    
T  12198162 gtgctcttctaatttggtcatgaagtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtttggttttgagcttttttt 12198063  T
Q  139 tgtgctctttcagtggatcggaggtcgagaggt 171  Q
      || ||||||| ||||||||||||||||||||    
T  12198062 gatgttctttcaatggatcggaggtcgagaggt 12198030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 12442590 - 12442458
Alignment:
Q  39 gtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattt 138  Q
    ||||||| || |||||||  | |||||||||||||||||||||||| |||  | || ||||||||| ||||||||||||  | | ||||| ||||| |||    
T  12442590 gtgctcttctaatttggtcatgaagtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtttggttttgagcttttttt 12442491  T
Q  139 tgtgctctttcagtggatcggaggtcgagaggt 171  Q
      || ||||||| ||||||||||||||||||||    
T  12442490 gatgttctttcaatggatcggaggtcgagaggt 12442458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 30236246 - 30236126
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||| |||| |||  |||||||| || ||||||||||| | |||||||||||  ||||| ||||||||| ||||||||||||||| |||||||     
T  30236246 ttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtcagttctttggt 30236147  T
Q  114 tcaatgtggtttttgggcttt 134  Q
    ||||  | | |||||||||||    
T  30236146 tcaagtttggttttgggcttt 30236126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 10552248 - 10552321
Alignment:
Q  30 gggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    |||| |||||||| || ||||||||||||| ||||||||||| |||||| |||||||||  ||||||||||||||    
T  10552248 gggcaaggggtgccct-ctgatttggttctgaagtctggtgggccgatcgcttttgattctagatcgggagtcag 10552321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 15906686 - 15906752
Alignment:
Q  51 tttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa 117  Q
    |||||| || ||||||||||| |||||||| ||||||| ||||||||||||||| ||||||| ||||    
T  15906686 tttggtcctgaagtctggtgggccgatcacatttgattcgagatcgggagtcagttctttggttcaa 15906752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 310
Target Start/End: Complemental strand, 34388923 - 34388827
Alignment:
Q  213 gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
    ||||||||| ||||||||||  || || |||||||||||||| ||||||||| || ||||||||||||||||| ||  || |||||||| |||||||||    
T  34388923 gtggctcagcttgggtgttggggtatgagagttttattttga-gggtgttctttgtgggtgagtagtgacgataggcggtggtggatac-gtgtttaca 34388827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 32945797 - 32945732
Alignment:
Q  38 ggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtca 103  Q
    |||||||| |||||||| |||| |||| | |||| | |||||||||||||| ||||||||||||||    
T  32945797 ggtgctcttctgatttgattctgaagtatagtgggctgatcacttttgattcgagatcgggagtca 32945732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 35062453 - 35062510
Alignment:
Q  47 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    ||||||||||||| ||||||||||| ||||||  |||||||| ||||||| |||||||    
T  35062453 ctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgagagtcag 35062510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 179
Target Start/End: Complemental strand, 17720786 - 17720660
Alignment:
Q  51 tttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttca 150  Q
    |||||| ||||||| |||||| | |||| ||||||||| | ||||||||||||| ||||||| ||||| | | ||||||||| | ||| ||| ||||||     
T  17720786 tttggtcctaaagtatggtgggctgatcgcttttgattcg-gatcgggagtcagttctttggttcaatttaggttttgggctgt-tttggtgttctttcg 17720689  T
Q  151 gtggatcggaggtcgagaggttgtggaag 179  Q
    |||||   ||||| ||||||| |||||||    
T  17720688 gtggacttgaggttgagaggtggtggaag 17720660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 36631042 - 36631095
Alignment:
Q  267 ggggtgagtagtgacgatgggacgttgtggatactgtgtttacagggtttgttt 320  Q
    |||||||||||| ||||||||  || |||||||| |||||||||| ||||||||    
T  36631042 ggggtgagtagttacgatgggcggtggtggataccgtgtttacagtgtttgttt 36631095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 22773663 - 22773699
Alignment:
Q  213 gtggctcagtttgggtgttgaagtctgggagttttat 249  Q
    ||||||||||||||||||||  |||||||||||||||    
T  22773663 gtggctcagtttgggtgttggggtctgggagttttat 22773699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 34378061 - 34378359
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| |||| ||| |||| ||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| |||||| |    
T  34378061 ttctctggtgtaccgggggcaaggagtgccctgctaatttggtactaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgac 34378160  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggtt-gtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
     |||  ||||||||||||||| |||||||||||||| ||||| ||||||||| |||||| |||  || ||  || || |||||||||| ||| |||| ||    
T  34378161 acaagttggtttttgggctttgttttgtgctctttcggtggaccggaggtcgcgaggtttgtgatagttgtttgatccttcggttagatgctcttcgtaa 34378260  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     ||||||||| ||||||||||  || || |||||||||||||| ||||||||| || |||||||||||||||||||   || |||||||| |||||||||    
T  34378261 tgtggctcagcttgggtgttggggtttgagagttttattttga-gggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttaca 34378359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 698324 - 698596
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||||||||||||| ||||| ||||||| ||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||| |    
T  698324 ttctctggtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagatcgggagtcaactctttgac 698423  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagct-tttcgaa 211  Q
    ||||  ||||||||||||||| | |||| ||||||| |||| || ||||| | |||| |||||  ||||||||  || |||||||||  ||| |||  ||    
T  698424 tcaagttggtttttgggctttgtgttgtactctttctgtggttcagaggttgcgaggtttgtgatagctgcataatccttcggttaggtgctctttgaaa 698523  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgat 284  Q
     ||||||||| ||||||||||  ||||| ||||||||||| || ||||||||| || |||||||||||||||||    
T  698524 tgtggctcagcttgggtgttggggtctgagagttttatttgga-gggtgttctttgtgggtgagtagtgacgat 698596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 320
Target Start/End: Original strand, 29087452 - 29087750
Alignment:
Q  22 tgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtg 121  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||||||||| |||| ||||||||| |||||| |||||||| ||||||  ||||  ||    
T  29087452 tgtaccgggggcgaggggtgctctgctattttggttctaaagtctggtggactgatcccttttgattcgagatcaggagtcagttctttgaatcaaattg 29087551  T
Q  122 gtttttgggcttta-ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctca 220  Q
    |||| ||||||||  |||||||||||||| ||||||||||||||| |||||| ||| |||| |||| || || ||| ||  ||| |||| | ||||||||    
T  29087552 gtttctgggcttttgttttgtgctctttcggtggatcggaggtcgcgaggttatggtagctccatgatcctttggtcaggtgctcttcgtatgtggctca 29087651  T
Q  221 gtttgggtgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggacgttgtggatactgtgtttacagggtttgtt 319  Q
      || | |||||  ||||||||| ||||||||||||| |  ||| | |||||||||||||||||||||  || ||| |||| |||||||||| | |||||    
T  29087652 acttagatgttggggtctgggagctttattttgagggtt--tctttaggggtgagtagtgacgatgggcggtggtgaataccgtgtttacagtgcttgtt 29087749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 320
Target Start/End: Original strand, 18593213 - 18593514
Alignment:
Q  21 gtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgt 120  Q
    |||||||| ||||||||| ||| ||||| ||||||| ||| ||| | |||| | |||||||||||||| |||||||||||| || |||||| |||||  |    
T  18593213 gtgtaccgggggcgagggatgccctgctaatttggtgctatagtttagtgggcagatcacttttgattcgagatcgggagttagttctttgactcaagtt 18593312  T
Q  121 ggtttttgggctttattttgtgctctttcagtggatcggaggtcgagag-gttgtggaagctgcatgttcattcggttagaagcttttcg-aaggtggct 218  Q
    |||||||||||||  | |||||||||||| |||| |||||||||| |||  |||||  || |||||| || |||||||||  | | |||| || ||||||    
T  18593313 ggtttttgggcttagtgttgtgctctttcggtggttcggaggtcgcgagatttgtgataggtgcatgatccttcggttaggtgttcttcgaaatgtggct 18593412  T
Q  219 cagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttacagggtttg 317  Q
    ||  ||||||||||  ||||||||||||||||| || || |||||| || ||||||||||||||||||||  || |||||||| |||||||||| | |||    
T  18593413 caacttgggtgttggggtctgggagttttatttgga-ggatgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttg 18593511  T
Q  318 ttt 320  Q
    |||    
T  18593512 ttt 18593514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 262
Target Start/End: Original strand, 8297438 - 8297678
Alignment:
Q  21 gtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgt 120  Q
    |||||||||||| ||||||||| || |||||||||||||||||  |||||| |  || | |||||||| ||||||||||||||| ||||||||||||  |    
T  8297438 gtgtaccgagggtgaggggtgcccttctgatttggttctaaagcatggtgggctaataatttttgattcgagatcgggagtcagttctttggctcaagtt 8297537  T
Q  121 ggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctca 220  Q
     | |||||| |||| || ||   |||||| ||| ||||||||||| ||||| ||||||| || ||| || ||||| ||| ||||||||| | |||||||     
T  8297538 tggttttggacttt-ttatggtttctttcggtgaatcggaggtcgtgaggtggtggaagttgaatggtctttcggataggagcttttcggatgtggctcg 8297636  T
Q  221 gtttgggtgttgaagtctgggagttttattttgaggggtgtt 262  Q
    |||| |||||| | |   |||||||| |||||||||||||||    
T  8297637 gttttggtgttcatgatggggagtttaattttgaggggtgtt 8297678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 7392141 - 7392050
Alignment:
Q  22 tgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    ||||||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  7392141 tgtaccgagggtgaggggtgcccttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagttctttggc 7392050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 14302548 - 14302368
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||||| |||||| ||||| ||| || ||| |||||| |||||||||||||||| ||||||||||| || ||||| ||||||||| |||||||     
T  14302548 ttctctggtgtatcgagggtgagggatgcccttctgttttggtcctaaagtctggtggactgatcacttttggttcgagattgggagtcagttctttgga 14302449  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcgg 195  Q
     |||  | | ||||||||||| || ||   |||||| ||||||||||||||||||||| |||||||||||||| || |||||    
T  14302448 gcaagtttggttttgggcttt-ttatggtttctttcggtggatcggaggtcgagaggtggtggaagctgcatgatctttcgg 14302368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 7195356 - 7195112
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||||||| |||| ||||||||| || |||||||||   ||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||    
T  7195356 ttctctggtgtacc-agggtgaggggtgcccttctgatttggccataaagtctggtgagccgatcacttttgattcgagatcgggagtcagttctttggc 7195258  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaagg 213  Q
    ||||  | |  |||||||||  || ||   | |||| ||||||||||||||||||||| |||||||||| ||  || || || ||| |||||| || | |    
T  7195257 tcaagttagagtttgggctt--ttatggtttttttcggtggatcggaggtcgagaggtcgtggaagctgaataatcttttggataggagctttgcggatg 7195160  T
Q  214 tggctcagtttgggtgttgaagtctgggagttttattttgaggggtgtt 262  Q
    |||||||| || ||| || | | || |||||||||||||||||| ||||    
T  7195159 tggctcagctttggtattcaggact-ggagttttattttgagggttgtt 7195112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 13954351 - 13954232
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||||||||| || ||||||||| || |||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||   |||||||    
T  13954351 ttctctggtgtaccgaaggtgaggggtgc-cttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcattactttggc 13954253  T
Q  114 tcaatgtggtttttgggcttt 134  Q
    ||||  | | |||||||||||    
T  13954252 tcaagtttggttttgggcttt 13954232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 33259000 - 33258833
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||||||||| || ||||||||  || ||| |||||| |||||||||||||| |||||||||||||||| |||||| ||||| || |||||||     
T  33259000 ttctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaagtctggtgggccgatcacttttgattcgagatcaggagttagttctttggt 33258901  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctg 182  Q
    || | || |  |||||||||| || ||   |||||| ||||||||||||||||||| | ||||||||||    
T  33258900 tcgaggttggatttgggcttt-ttatggtttctttcggtggatcggaggtcgagagatagtggaagctg 33258833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 22675402 - 22675278
Alignment:
Q  54 ggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtg 153  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||| ||||||||||||  | | ||||||||||||  | ||| ||||||||||    
T  22675402 ggttctaaagtctggtggaccgatcgattttgattcgagatcgggagtcagttctttggctcaagtttggttttgggcttta-atggtgttctttcagtg 22675304  T
Q  154 gatcggaggtcgagaggttgtggaag 179  Q
    |  ||||||| | ||||| |||||||    
T  22675303 gtccggaggttgtgaggtggtggaag 22675278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 51 - 288
Target Start/End: Complemental strand, 26046045 - 26045806
Alignment:
Q  51 tttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttca 150  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||||||| ||   ||||||||||  | | |||||| |||| || ||   ||| ||     
T  26046045 tttggtcctaaagtctggtgaaccgatcacttttgattcgagatcgggagttagtgttttggctcaagtttggttttggacttt-ttatggtttctctcg 26045947  T
Q  151 gtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggagttttatt 250  Q
    | |||||||||||||  ||| |||||||||||  || || ||| | ||  ||||||||| ||||| ||||  || |||||| | |  || |||||| |||    
T  26045946 ggggatcggaggtcgttaggctgtggaagctgattgatctttcagatatgagcttttcggaggtgactcaactttggtgtttaggattgagagtttaatt 26045847  T
Q  251 ttgaggggtg---ttctctggggtgagtagtgacgatggga 288  Q
    ||||||||||   |||| |||||||||||||||||||||||    
T  26045846 ttgaggggtgtttttctttggggtgagtagtgacgatggga 26045806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 24072384 - 24072281
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||| ||||||||   ||||||| || |||||||||| |||||||||||| | | |||| |||||||||||||||||| |||||| |||||||     
T  24072384 ttctctggtggaccgagggtttggggtgcccttctgatttggtcctaaagtctggttggctgatcgcttttgatttgagatcggaagtcagttctttggt 24072285  T
Q  114 tcaa 117  Q
    ||||    
T  24072284 tcaa 24072281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 357
Target Start/End: Complemental strand, 7161933 - 7161789
Alignment:
Q  213 gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctgggg-tgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
    ||||||||| ||| ||||||  |||||||||||||||||||| || |||||| ||||| |||||||||||| ||||  || ||||| |  ||||||||||    
T  7161933 gtggctcagcttgtgtgttggggtctgggagttttattttgatgg-tgttctttgggggtgagtagtgacgttgggtggtggtggaaatcgtgtttacag 7161835  T
Q  312 ggtttgtttctgttaaggcgtctgtcttaggtgatgatgtgctttg 357  Q
     | |||||| ||| |||| |||||| ||||||  ||||||| ||||    
T  7161834 tgcttgtttttgtgaaggagtctgttttaggtagtgatgtgttttg 7161789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 25991975 - 25992174
Alignment:
Q  19 tggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaat 118  Q
    ||||||||||| |  |||| |||| || ||  |||||| |||||||||||||| || ||| ||||||||| ||||||| ||||||| ||||| |||| |     
T  25991975 tggtgtaccgaagatgaggagtgcccttctattttggtgctaaagtctggtgggccaatcgcttttgattcgagatcgagagtcagttctttagctcgag 25992074  T
Q  119 gtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggct 218  Q
    || | ||||||||||| || ||   ||||||  |||||||||||||| ||| |  ||||||||  ||| || |||||  |||||||||| | ||||||||    
T  25992075 gttggttttgggcttt-ttatgatttctttcgatggatcggaggtcgtgagatgttggaagcttaatgatctttcggggagaagctttttgtaggtggct 25992173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 7162353 - 7162267
Alignment:
Q  96 gggagtcagctctttggctcaatgtggtttttgggcttta-ttttgtgctctttcagtggatcggaggtcgagaggttgtggaagct 181  Q
    ||||||||| |||||| |||||  ||||||||||| |||  ||||||||||||||  |||||||||||||| |||||| ||||||||    
T  7162353 gggagtcagttctttgactcaagttggtttttgggtttttgttttgtgctctttcgatggatcggaggtcgcgaggttatggaagct 7162267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 23426344 - 23426402
Alignment:
Q  51 tttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctt 109  Q
    |||||| || |||||||||||||||| ||||||||||| ||||| ||||||||| ||||    
T  23426344 tttggtcctgaagtctggtggaccgaacacttttgattcgagattgggagtcagttctt 23426402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 31721640 - 31721730
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    |||| ||||| |||| |||  |||||||| || ||||| ||||||| ||||||  ||| |||||| ||||||||| |||||||||||||||    
T  31721640 ttctctggtggaccgggggtaaggggtgcccttctgatgtggttctgaagtctaatgggccgatcgcttttgattcgagatcgggagtcag 31721730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 39184256 - 39184202
Alignment:
Q  63 gtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaa 117  Q
    ||||||||| |||||||||||||||| |||||||| |||||| ||||||| ||||    
T  39184256 gtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggttcaa 39184202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 8730928 - 8730978
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgggagtcagctctttgg 112  Q
    ||||||||||||| ||| ||||| ||| ||||||||||||||| |||||||    
T  8730928 agtctggtggacctatcgcttttaattcgagatcgggagtcagttctttgg 8730978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 27713079 - 27713152
Alignment:
Q  61 aagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggcttt 134  Q
    |||||| |||| ||||||  |||||||| |||||||||| |||| ||||||||||||  | | |||||||||||    
T  27713079 aagtctagtgggccgatcgtttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggcttt 27713152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 12046252 - 12046308
Alignment:
Q  48 tgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    ||||||| |||  |||| |||||| |||||||||||||||| |||||||||| ||||    
T  12046252 tgatttgattcggaagtttggtgggccgatcacttttgattcgagatcgggactcag 12046308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 25341709 - 25341741
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagat 94  Q
    |||||||||| ||||||||||||||||||||||    
T  25341709 agtctggtgggccgatcacttttgatttgagat 25341741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 35889 - 35585
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| |||||||||||||   ||| |||||||| || ||||| |||| |||||||||||||||| ||||||||||||||  |||||| |    
T  35889 ttctctggtgtaccgggggcgaggggtgcctagctaatttggttatatagtctagtgggccgatcacttttgattcgagatcgggagtca-ttctttgac 35791  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagag-gttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    | ||  ||||||||||||||||| |||||||||||| ||||||||||||||  |||  |||||  ||||||||| ||  ||||||||  ||| |||| ||    
T  35790 ttaagttggtttttgggctttatgttgtgctctttcggtggatcggaggtcacgagatttgtgatagctgcatgatccatcggttaggtgctcttcgaaa 35691  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     | ||||||| ||||||||||  || |||||||||| ||| ||   |||||||  |  ||||||| |||||||||||  || ||||||||||||||||||    
T  35690 tgaggctcagcttgggtgttggggtgtgggagttttttttaga---gtgttcttagcaggtgagt-gtgacgatgggcagtggtggatactgtgtttaca 35595  T
Q  311 gggtttgttt 320  Q
    | | ||||||    
T  35594 gtgcttgttt 35585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 3117456 - 3117764
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||| ||| ||||||||||||| ||||| ||||| |  || ||| |||||| ||||||||||||||||  |||||||||||||| |||||| |    
T  3117456 ttctctggtgttccgggggcgaggggtgccctgctaatttgttgatatagtatggtgggccgatcacttttgattcaagatcgggagtcagttctttgac 3117555  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcggttagaagcttttcg-aa 211  Q
    ||||  ||||||||||||||| | |||||||||||  |||| |||||||||| |||| |||||  || |||||| || |||| |||   ||| |||| ||    
T  3117556 tcaagttggtttttgggctttgtgttgtgctctttatgtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcgattatgtgctcttcgaaa 3117655  T
Q  212 ggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttaca 310  Q
     ||||||||  ||||||||||  |||||||||||||||||  | ||||||||| || |||| ||||| ||||||| |  || |||| ||| |||||||||    
T  3117656 tgtggctcaacttgggtgttggggtctgggagttttatttata-gggtgttctttgtgggtaagtagagacgatgagcggtggtggttaccgtgtttaca 3117754  T
Q  311 gggtttgttt 320  Q
    | | ||||||    
T  3117755 gtgcttgttt 3117764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 20701921 - 20701716
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||| ||| ||||||||| || ||||||||||  |  || ||||||  |||||||||||||||| |||||||||||| || ||||||||    
T  20701921 ttctctggtgtaccgggggtgaggggtgcccttctgatttggtcatttagactggtgtgccgatcacttttgattcgagatcgggagttagttctttggc 20701822  T
Q  114 tcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaagg 213  Q
    | ||  | | ||||||||||| | | ||  |||||| ||||||||||||||||||||| |||||||||| ||| || ||||| ||| ||||||||||| |    
T  20701821 ttaagtttggttttgggctttttatggtt-tctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatg 20701723  T
Q  214 tggctca 220  Q
    |||||||    
T  20701722 tggctca 20701716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 16510419 - 16510304
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| ||||||||||||||| |||||||| ||||| ||||||||||||||||| |||| |||||||||||||||| ||||| | ||||||| |||||  |    
T  16510419 ttctctggtgtaccgagggcaaggggtgccctgctaatttggttctaaagtctagtgggccgatcacttttgattcgagattgagagtcagttcttttac 16510320  T
Q  114 tcaatgtggtttttgg 129  Q
    ||||  ||||||||||    
T  16510319 tcaagttggtttttgg 16510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 9224042 - 9224172
Alignment:
Q  52 ttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcag 151  Q
    ||||| |||||||||||||| | |||| ||||||||| ||||||||||||||| ||||||| ||| | | | |||||||||||  || |||||||||| |    
T  9224042 ttggtcctaaagtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttggttcagttttggttttgggcttttattggtgctctttcgg 9224141  T
Q  152 tggatcggaggtcgagaggttgtggaagctg 182  Q
    || | ||||||| | | ||| ||||||||||    
T  9224142 tgcaccggaggttgtgcggtggtggaagctg 9224172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 32935437 - 32935286
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctt 133  Q
    ||||||| | || |||||||||| || ||||||||||| |||||| ||||||||| ||||||||||||||| |||| | |||||  | | |||||| |||    
T  32935437 gaggggttcccttctgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttcttggactcaagtttgattttggactt 32935338  T
Q  134 tattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatg 186  Q
    | ||| ||| |||||| |||| ||  |||| | ||||| ||||||||||||||    
T  32935337 t-tttagtgttctttcggtggttcaaaggttgggaggtggtggaagctgcatg 32935286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 26216112 - 26216017
Alignment:
Q  38 ggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggcttt 134  Q
    ||||| || |||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||| |||| || ||| | | | |||||||||||    
T  26216112 ggtgcccttctgatttgattctaa-gtctggtgggccgatcacttttgattcgagatcgggagtcagttcttcggttcagttttggttttgggcttt 26216017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 262
Target Start/End: Complemental strand, 3880587 - 3880469
Alignment:
Q  144 tctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggag 243  Q
    |||||| ||||||||||||||||| ||| ||||||| || ||  || ||||| ||  ||||||| | | ||||||||| || |||||| ||| || ||||    
T  3880587 tctttccgtggatcggaggtcgagtggtggtggaagttgaataatctttcggatatgagctttttggatgtggctcagctttggtgttcaagacttggag 3880488  T
Q  244 ttttattttgaggggtgtt 262  Q
    ||| |||||||||||||||    
T  3880487 tttaattttgaggggtgtt 3880469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 3880701 - 3880627
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatt 88  Q
    |||| |||| ||||||||| ||| ||||| || |||||||||| ||||||| |||||| ||||||||||||||||    
T  3880701 ttctctggtttaccgagggtgagaggtgcccttctgatttggtcctaaagtttggtgggccgatcacttttgatt 3880627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 26534804 - 26534742
Alignment:
Q  47 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctt 109  Q
    |||||||||| || ||||||||||| |||||||||||||||| ||||| ||||||||| ||||    
T  26534804 ctgatttggtcctgaagtctggtgggccgatcacttttgattcgagattgggagtcagttctt 26534742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 34105410 - 34105466
Alignment:
Q  48 tgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    ||||||| ||||| ||| |||||| |||||||||||||||| |||||||||||||||    
T  34105410 tgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcag 34105466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 182
Target Start/End: Original strand, 13423482 - 13423596
Alignment:
Q  67 ggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctctttcagtggatcggaggtcga 166  Q
    |||||||||||||||||||||| ||||||| ||||| | ||||||||||||  | | || |||||||||| | ||  ||||||  |||| |||||| ||     
T  13423482 ggtggaccgatcacttttgattcgagatcgagagtcggttctttggctcaagtttggttatgggctttatatggt-ttctttcgatggaccggaggccgc 13423580  T
Q  167 gaggttgtggaagctg 182  Q
    ||||| ||||||||||    
T  13423581 gaggtggtggaagctg 13423596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 14663241 - 14663339
Alignment:
Q  213 gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatactgtgtttacag 311  Q
    ||||||| | |||| |||||  || |||||||||||||||||||  |||||| || ||||||||||||||||||||  || ||||||| |||||||||||    
T  14663241 gtggctcggcttggatgttggggtttgggagttttattttgagga-tgttctttgcgggtgagtagtgacgatgggcggtggtggatattgtgtttacag 14663339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 15132648 - 15132585
Alignment:
Q  7 tatggtgttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtg 70  Q
    ||||||||||| || ||||| | ||||||||||||| ||| |||||| ||||||||||||||||    
T  15132648 tatggtgttctctgatgtactgggggcgaggggtgccctgttgattttgttctaaagtctggtg 15132585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 21266110 - 21266163
Alignment:
Q  48 tgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagt 101  Q
    ||||||||| |||||| ||||||| |||||| ||||||||| ||||||||||||    
T  21266110 tgatttggtcctaaagactggtgggccgatcgcttttgattcgagatcgggagt 21266163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 10541996 - 10542083
Alignment:
Q  213 gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggacgttgtggatac 300  Q
    ||||||||| ||||||||||  |||||| |||||||||| ||||| | |||| || ||||||||||||||||||||  || ||||||||    
T  10541996 gtggctcagcttgggtgttggggtctggaagttttatttggaggg-tattctttgtgggtgagtagtgacgatgggcggtggtggatac 10542083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 97
Target Start/End: Complemental strand, 7546499 - 7546464
Alignment:
Q  62 agtctggtggaccgatcacttttgatttgagatcgg 97  Q
    ||||||||||||||||||||||||||| ||||||||    
T  7546499 agtctggtggaccgatcacttttgattcgagatcgg 7546464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 12794114 - 12794173
Alignment:
Q  51 tttggttctaaagtctggtggaccgatc-acttttgatttgagatcgggagtcagctctt 109  Q
    |||||||||||||||| |||| |||||| |||||||||| |||||| |||||||| ||||    
T  12794114 tttggttctaaagtctagtgggccgatcaacttttgattcgagatcaggagtcagttctt 12794173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 36670 - 36888
Alignment:
Q  14 ttctatggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggc 113  Q
    |||| |||||||||||| | ||||||||| || |||||||||| ||||||||||| || | |||||||||||||| ||||||||||||||| |||||| |    
T  36670 ttctctggtgtaccgagagtgaggggtgcccttctgatttggtcctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagttctttgtc 36769  T
Q  114 tcaa--tgtggtttttgggctttattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaa 211  Q
    ||||  | | | |||||| |||| || ||   |||||| |||||||||||||||||| || ||||||| || ||| || ||||||||| ||||||||||     
T  36770 tcaactttttggttttggtcttt-ttatgatttctttcggtggatcggaggtcgagatgtggtggaagttgaatggtctttcggttaggagcttttcgat 36868  T
Q  212 ggtggctcagtttgggtgtt 231  Q
     ||||||||| || ||||||    
T  36869 tgtggctcagctttggtgtt 36888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 19366 - 19513
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctt 133  Q
    ||||||||| || |||||||||| |||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||  | | ||||||||||    
T  19366 gaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggctt 19465  T
Q  134 tattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctg 182  Q
    | || ||   |||||| ||||||||||||||||||| | ||||||||||    
T  19466 t-ttatggtttctttcggtggatcggaggtcgagagttggtggaagctg 19513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 34 - 233
Target Start/End: Complemental strand, 42236 - 42037
Alignment:
Q  34 gaggggtgctctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctt 133  Q
    ||||||||| || ||||||| || |||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||  | | ||||||| ||    
T  42236 gaggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggatt 42137  T
Q  134 tattttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttc-attcggttagaagcttttcgaaggtggctcagtttgggtgttg 232  Q
    | || ||   |||||||||||||||||||||||||| | |||||||||| ||  ||  ||||| ||| ||||||||||| ||||||| | || |||||||    
T  42136 t-ttatggtttctttcagtggatcggaggtcgagagttggtggaagctgaataatcttttcggataggagcttttcgaatgtggctctgctttggtgttg 42038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 309
Target Start/End: Original strand, 5747 - 5966
Alignment:
Q  93 atcgggagtcagctctttggctcaatgtggtttttgggctttatttt-gtgctctttcagtggatcggaggtcgagaggtt-gtggaagctgcatgttca 190  Q
    |||||||||||| |||||| ||||   ||||||||||||||| |||| |||||||||| || ||||||||||||  ||||| |||  |||| | || ||     
T  5747 atcgggagtcagttctttgactcaggttggtttttgggctttgtttttgtgctctttcggtagatcggaggtcgcaaggtttgtgatagctacttgatcc 5846  T
Q  191 ttcggttagaagcttttcg-aaggtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatggga 288  Q
    |||||||||  ||| |||| || ||||||||| ||||||||||   ||||||||||||||||||| ||||||| | || ||||||||||||| |||||||    
T  5847 ttcggttaggtgctcttcgtaatgtggctcagcttgggtgttgggatctgggagttttattttga-gggtgttttttgtgggtgagtagtgatgatggga 5945  T
Q  289 cgttgtggatactgtgtttac 309  Q
     || ||||||||  |||||||    
T  5946 ggtggtggataccatgtttac 5966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 262
Target Start/End: Original strand, 58125 - 58337
Alignment:
Q  49 gatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttggctcaatgtggtttttgggctttattttgtgctcttt 148  Q
    |||||||| ||||||| |||||| ||||||||||||||||  ||||||| |||||  | ||||| ||||  | | |||| |||||| | | ||  |||||    
T  58125 gatttggtcctaaagtttggtgggccgatcacttttgattcaagatcggaagtcaattgtttggatcaagtttggttttaggctttttatggtt-tcttt 58223  T
Q  149 cagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttagaagcttttcgaaggtggctcagtttgggtgttgaagtctgggagtttta 248  Q
    | ||||||||||||||||||| |  ||||||||| ||  || ||||| ||  ||||||||||| ||||||||| || ||||||   | ||| |||||| |    
T  58224 cggtggatcggaggtcgagagatgatggaagctgaattatctttcggataagagcttttcgaatgtggctcagctttggtgttcgggactgagagtttaa 58323  T
Q  249 ttttgaggggtgtt 262  Q
    |||||||| |||||    
T  58324 ttttgaggagtgtt 58337  T

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Target: scaffold1613 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 1102 - 1037
Alignment:
Q  47 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcagctctttgg 112  Q
    ||||||||||  | ||||||||||| |||||| ||||||||| ||||||||||||||| |||||||    
T  1102 ctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgg 1037  T

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Target: scaffold0620 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 3827 - 3883
Alignment:
Q  48 tgatttggttctaaagtctggtggaccgatcacttttgatttgagatcgggagtcag 104  Q
    ||||||| || || |||||||||| ||||||| |||||||| |||||||||||||||    
T  3827 tgatttgtttttagagtctggtgggccgatcaattttgattcgagatcgggagtcag 3883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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