View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10041_low_19 (Length: 369)
Name: NF10041_low_19
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 6609156 - 6609503
Alignment:
| Q |
18 |
caagtgtatgtgaacttattgaaatatt---tttctacttctttcctatttttggaaatgaaggctgataggtaaagttactatgcaatctttgcagttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6609156 |
caagtgtatgtgaacttattgaaatattatttttctacttctttcctatttttggaaatgaaggctgataggtaaagttactatgcaatctttgcagttg |
6609255 |
T |
|
| Q |
115 |
tacctgtttggaccaaagaatgcaaaatcattcattcaaggtgagattttttatgtcggattatattttcactacgcttaattttataataattgttaat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6609256 |
tacctgtttggaccaaagaatgcaaaatcattcattcaaggtgagattttttatgtcagattatattttcactacgcttaattttataataattgttaat |
6609355 |
T |
|
| Q |
215 |
gtatgttaaatgagatgattttaattgtatgcagaattgcatgtggacaaagaatcttttgggggttgtggaggaataattggaaggaagaaaggggctg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6609356 |
gtatgttaaatgagatgattttaattgtatgcagaattgcatgtggacaaagaatcttttgggggttgtggaggaataattggaaggaagaaaggggctg |
6609455 |
T |
|
| Q |
315 |
tagcaattcgcattaactacaaaggcatacgtttgatgtccatctcat |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
6609456 |
tagcaattcgcattaactacaaaggcatacgtttgttgttcatctcat |
6609503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University