View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_21 (Length: 367)
Name: NF10041_low_21
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 4175905 - 4176263
Alignment:
| Q |
1 |
taagataagagaccatcctatgcaatgcacaccacatatattattgaccatatataattatatacctttcgtcctttt---tgaaatttaaagcacgtag |
97 |
Q |
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| T |
4175905 |
taagataagagaccatcctatgcaatgcacacaacatatattattgaccatatataattatataccttccgtccttttctttgaaatttaaagcacgtag |
4176004 |
T |
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| Q |
98 |
ttcttttccatcctcagatttcagcactatcctgtacagccgaatttatgaactgatataagaattgtgcaacaaggcaagggataaaaataaaaaggta |
197 |
Q |
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| T |
4176005 |
ttcttttccatcctcagatttcagcactatcctgtacagccgaatttatgaactgatataagaattgtgcaacaaggcaagggataaaaataaaaaggta |
4176104 |
T |
|
| Q |
198 |
acgaattaaattacccttgaatttctaaatattgagttctgagataatttgctactccaattgaatcaagagcactccacccatttttggaaagggtgag |
297 |
Q |
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| T |
4176105 |
acgaattaaattacccttgaatttctaaatattgagttctgagataatttgctactccaattgaatcaagagcactccacccatttttggaaagggtgag |
4176204 |
T |
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| Q |
298 |
tgaagttccaccagctctaagtgactccgactgttccagtaccaaagaccgaacaccaa |
356 |
Q |
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| T |
4176205 |
tgaagttccaccagttctaagtgactccgactgttccagtaccaaagaccgaacaccaa |
4176263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 77 - 356
Target Start/End: Original strand, 4171822 - 4172115
Alignment:
| Q |
77 |
tttgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatcctgtacagccgaatttatgaac---------------tgatataagaa |
161 |
Q |
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| T |
4171822 |
tttgaaattgaaggcacgtagttctcttccatcctcagacttcaccaccatcctgtacagctgatattatgaaccagctcaagctcagctaatatatgca |
4171921 |
T |
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| Q |
162 |
ttgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaatattgagttctgagataatttgctactccaattga |
261 |
Q |
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| T |
4171922 |
ttgtgcaaccaggcaagtgataaaaattaaaac-taacaaattaagttacccttgaatttctaaatattgagttctgaggtaatttgctactccaatgga |
4172020 |
T |
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| Q |
262 |
atcaagagcactccacccatttttggaaagggtgagtgaagttccaccagctctaagtgactccgactgttccagtaccaaagaccgaacaccaa |
356 |
Q |
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| T |
4172021 |
atcaagtacactccacccattcttgaaaagggtgagtgaagttccaccggttcgaagtgactctgactgctccagcacaagagaccgaacaccaa |
4172115 |
T |
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